miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: AATAATACATGGTTGATCTTT

selected species: Homo sapiens

5 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Homo sapiens	GSM494810_Normal_2	AATAATACATGGTTGATCTTT	AGATCGACCGTGTTATATTCG	down	2	0

Secondary structure

GTACTTGAAGGGAGATCGACCGTGTTATATTCGCTTTATTGACTTCGAATAATACATGGTTGATCTTTTCTCAGTAT
------------AGATCGACCGTGTTATATTCG 	16
------------AGATCGACCGTGTTATATTCGCT 	1
------------AGATCGACCGTGTTATATTCGC 	1
-----------------------------------------------AATAATACATGGTTGATCTTT 	28

Overlaps with: MNEST030345 MNEST033342 MNEST033343
Overlaps with miRBase pre-miRNAs: mml-mir-369 hsa-mir-369 ptr-mir-369 ppy-mir-369 bta-mir-369
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Homo sapiens	GSM651908	AATAATACATGGTTGATCTTT	AGATCGACCGTGTTATATTCG	down	2	0

Secondary structure

GTACTTGAAGGGAGATCGACCGTGTTATATTCGCTTTATTGACTTCGAATAATACATGGTTGATCTTTTCTCAGTAT
------------AGATCGACCGTGTTATATTC 	82
------------AGATCGACCGTGTTATATT 	189
------------AGATCGACCGTGTTATATTCGCT 	7
------------AGATCGACCGTGTTATATTCG 	3
------------AGATCGACCGTGTTATATTCGCTT 	2
----------------------------------------------GAATAATACATGGTTGATCTTT 	2
----------------------------------------------GAATAATACATGGTTGATCTT 	2
-----------------------------------------------AATAATACATGGTTGATCTTTT 	21
-----------------------------------------------AATAATACATGGTTGATCTTT 	309
-----------------------------------------------AATAATACATGGTTGATCTT 	12
-----------------------------------------------AATAATACATGGTTGATCT 	2
------------------------------------------------ATAATACATGGTTGATCTTT 	23
------------------------------------------------ATAATACATGGTTGATCTTTT 	2

Overlaps with: MNEST030345 MNEST033342 MNEST033343
Overlaps with miRBase pre-miRNAs: mml-mir-369 hsa-mir-369 ptr-mir-369 ppy-mir-369 bta-mir-369
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Homo sapiens	GSM651906	AATAATACATGGTTGATCTTT	AGATCGACCGTGTTATATTCG	down	2	0

Secondary structure

GTACTTGAAGGGAGATCGACCGTGTTATATTCGCTTTATTGACTTCGAATAATACATGGTTGATCTTTTCTCAGTAT
------------AGATCGACCGTGTTATATTC 	97
------------AGATCGACCGTGTTATATT 	138
------------AGATCGACCGTGTTATATTCGCT 	5
------------AGATCGACCGTGTTATATTCG 	4
------------AGATCGACCGTGTTATATTCGCTT 	1
----------------------------------------------GAATAATACATGGTTGATCTTT 	1
-----------------------------------------------AATAATACATGGTTGATCTTTT 	13
-----------------------------------------------AATAATACATGGTTGATCTTT 	288
-----------------------------------------------AATAATACATGGTTGATCTT 	31
-----------------------------------------------AATAATACATGGTTGATCT 	1
------------------------------------------------ATAATACATGGTTGATCTTT 	21
------------------------------------------------ATAATACATGGTTGATCTT 	4
------------------------------------------------ATAATACATGGTTGATCTTTT 	2

Overlaps with: MNEST030345 MNEST033342 MNEST033343
Overlaps with miRBase pre-miRNAs: mml-mir-369 hsa-mir-369 ptr-mir-369 ppy-mir-369 bta-mir-369
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Homo sapiens	GSM531982	AATAATACATGGTTGATCTTT	AGATCGACCGTGTTATATTCG	down	2	0

Secondary structure

GTACTTGAAGGGAGATCGACCGTGTTATATTCGCTTTATTGACTTCGAATAATACATGGTTGATCTTTTCTCAGTAT
------------AGATCGACCGTGTTATATTCGCTT 	10
------------AGATCGACCGTGTTATATTCGCT 	9
------------AGATCGACCGTGTTATATTCGC 	17
------------AGATCGACCGTGTTATATTCG 	91
------------AGATCGACCGTGTTATATTC 	275
------------AGATCGACCGTGTTATATT 	31
------------AGATCGACCGTGTTATATTCGCTTT 	2
----------------------------------------------GAATAATACATGGTTGATCTTT 	2
----------------------------------------------GAATAATACATGGTTGATCTT 	1
-----------------------------------------------AATAATACATGGTTGATCTTTT 	51
-----------------------------------------------AATAATACATGGTTGATCTTT 	1010
-----------------------------------------------AATAATACATGGTTGATCTT 	58
-----------------------------------------------AATAATACATGGTTGATCT 	8
------------------------------------------------ATAATACATGGTTGATCTTT 	13
------------------------------------------------ATAATACATGGTTGATCTT 	2
------------------------------------------------ATAATACATGGTTGATCTTTT 	1

Overlaps with: MNEST030345 MNEST033342 MNEST033343
Overlaps with miRBase pre-miRNAs: mml-mir-369 hsa-mir-369 ptr-mir-369 ppy-mir-369 bta-mir-369
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Homo sapiens	GSM651907	AATAATACATGGTTGATCTTT	AGATCGACCGTGTTATATTCG	down	2	0

Secondary structure

GTACTTGAAGGGAGATCGACCGTGTTATATTCGCTTTATTGACTTCGAATAATACATGGTTGATCTTTTCTCAGTAT
------------AGATCGACCGTGTTATATTC 	123
------------AGATCGACCGTGTTATATT 	196
------------AGATCGACCGTGTTATATTCGCT 	7
------------AGATCGACCGTGTTATATTCG 	4
------------AGATCGACCGTGTTATATTCGCTT 	2
------------AGATCGACCGTGTTATATTCGCTTT 	1
----------------------------------------------GAATAATACATGGTTGATCTTT 	4
----------------------------------------------GAATAATACATGGTTGATCTT 	1
-----------------------------------------------AATAATACATGGTTGATCTTTT 	70
-----------------------------------------------AATAATACATGGTTGATCTTT 	653
-----------------------------------------------AATAATACATGGTTGATCTT 	60
-----------------------------------------------AATAATACATGGTTGATCT 	1
------------------------------------------------ATAATACATGGTTGATCTTT 	37
------------------------------------------------ATAATACATGGTTGATCTT 	8
------------------------------------------------ATAATACATGGTTGATCTTTT 	7

Overlaps with: MNEST030345 MNEST033342 MNEST033343
Overlaps with miRBase pre-miRNAs: mml-mir-369 hsa-mir-369 ptr-mir-369 ppy-mir-369 bta-mir-369
HuntMi prediction: true miRNA