miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AATAATACATGGTTGATCTTT

selected species: Mus musculus



8 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM527274-2107 AATAATACATGGTTGATCTTT AGATCGACCGTGTTATATTCG down 2 0


Secondary structure

ACCTCTGCTGGTACTTGAAGGGAGATCGACCGTGTTATATTCGCTTGGCTGACTTCGAATAATACATGGTTGATCTTTTCTCAGTATCAACGCTCAG
----------------------AGATCGACCGTGTTATATTCGCT 	20
----------------------AGATCGACCGTGTTATATTCG 	204
----------------------AGATCGACCGTGTTATATTCGC 	1210
----------------------AGATCGACCGTGTTATATTC 	51
----------------------AGATCGACCGTGTTATATTCGCTTGG 	1
----------------------AGATCGACCGTGTTATATT 	5
-----------------------GATCGACCGTGTTATATTCGCT 	3
-----------------------GATCGACCGTGTTATATTCGC 	40
-----------------------GATCGACCGTGTTATATTCG 	4
------------------------ATCGACCGTGTTATATTCGC 	85
------------------------ATCGACCGTGTTATATTCGCT 	4
------------------------ATCGACCGTGTTATATTCG 	51
-------------------------TCGACCGTGTTATATTCGC 	30
-------------------------TCGACCGTGTTATATTCGCT 	2
-------------------------------------------------------CGAATAATACATGGTTGATCTTT 	4
--------------------------------------------------------GAATAATACATGGTTGATC 	2
--------------------------------------------------------GAATAATACATGGTTGATCT 	7
--------------------------------------------------------GAATAATACATGGTTGATCTT 	99
--------------------------------------------------------GAATAATACATGGTTGATCTTTT 	17
--------------------------------------------------------GAATAATACATGGTTGATCTTT 	904
---------------------------------------------------------AATAATACATGGTTGATCT 	25
---------------------------------------------------------AATAATACATGGTTGATCTTTT 	183
---------------------------------------------------------AATAATACATGGTTGATCTT 	197
---------------------------------------------------------AATAATACATGGTTGATCTTT 	4627
----------------------------------------------------------ATAATACATGGTTGATCTTT 	15
----------------------------------------------------------ATAATACATGGTTGATCTTTTC 	4
----------------------------------------------------------ATAATACATGGTTGATCTTTTCT 	1
----------------------------------------------------------ATAATACATGGTTGATCTT 	2
----------------------------------------------------------ATAATACATGGTTGATCTTTT 	5
-----------------------------------------------------------TAATACATGGTTGATCTTT 	3
------------------------------------------------------------AATACATGGTTGATCTTTT 	2


Overlaps with: MNEST032039 MNEST032040
Overlaps with miRBase pre-miRNAs: mmu-mir-369
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM527280 AATAATACATGGTTGATCTTT AGATCGACCGTGTTATATTCG down 2 0


Secondary structure

ACCTCTGCTGGTACTTGAAGGGAGATCGACCGTGTTATATTCGCTTGGCTGACTTCGAATAATACATGGTTGATCTTTTCTCAGTATCAACGCTCAG
----------------------AGATCGACCGTGTTATATTCGC 	413
----------------------AGATCGACCGTGTTATATTC 	23
----------------------AGATCGACCGTGTTATATT 	5
----------------------AGATCGACCGTGTTATATTCGCTT 	1
----------------------AGATCGACCGTGTTATATTCGCT 	13
----------------------AGATCGACCGTGTTATATTCG 	84
-----------------------GATCGACCGTGTTATATTCGCT 	1
-----------------------GATCGACCGTGTTATATTCG 	3
-----------------------GATCGACCGTGTTATATTC 	3
-----------------------GATCGACCGTGTTATATTCGC 	21
------------------------ATCGACCGTGTTATATTCGCT 	3
------------------------ATCGACCGTGTTATATTCG 	19
------------------------ATCGACCGTGTTATATTCGC 	46
-------------------------TCGACCGTGTTATATTCGCT 	1
-------------------------TCGACCGTGTTATATTCGC 	9
--------------------------CGACCGTGTTATATTCGCT 	1
--------------------------------------------------------GAATAATACATGGTTGATCTTTT 	5
--------------------------------------------------------GAATAATACATGGTTGATCTTT 	338
--------------------------------------------------------GAATAATACATGGTTGATCTT 	42
---------------------------------------------------------AATAATACATGGTTGATCT 	6
---------------------------------------------------------AATAATACATGGTTGATCTTTT 	52
---------------------------------------------------------AATAATACATGGTTGATCTTT 	1730
---------------------------------------------------------AATAATACATGGTTGATCTT 	57
----------------------------------------------------------ATAATACATGGTTGATCTT 	1
----------------------------------------------------------ATAATACATGGTTGATCTTTT 	1
----------------------------------------------------------ATAATACATGGTTGATCTTTTC 	1
----------------------------------------------------------ATAATACATGGTTGATCTTT 	4
------------------------------------------------------------AATACATGGTTGATCTTTT 	1


Overlaps with: MNEST032039 MNEST032040
Overlaps with miRBase pre-miRNAs: mmu-mir-369
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM539855 AATAATACATGGTTGATCTTT AGATCGACCGTGTTATATTCG down 2 0


Secondary structure

ACCTCTGCTGGTACTTGAAGGGAGATCGACCGTGTTATATTCGCTTGGCTGACTTCGAATAATACATGGTTGATCTTTTCTCAGTATCAACGCTCAG
--------------------GGAGATCGACCGTGTTATATTC 	1
----------------------AGATCGACCGTGTTATATTCGC 	4
----------------------AGATCGACCGTGTTATATTCG 	14
----------------------AGATCGACCGTGTTATATTCGCTT 	1
---------------------------------------------------------AATAATACATGGTTGATCTTTTC 	3
---------------------------------------------------------AATAATACATGGTTGATCTTT 	63
---------------------------------------------------------AATAATACATGGTTGATCTT 	4
---------------------------------------------------------AATAATACATGGTTGATCTTTT 	1


Overlaps with: MNEST032039 MNEST032040
Overlaps with miRBase pre-miRNAs: mmu-mir-369
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Mus musculus GSM527276 AATAATACATGGTTGATCTTT AGATCGACCGTGTTATATTCG down 2 0


Secondary structure

ACCTCTGCTGGTACTTGAAGGGAGATCGACCGTGTTATATTCGCTTGGCTGACTTCGAATAATACATGGTTGATCTTTTCTCAGTATCAACGCTCAG
----------------------AGATCGACCGTGTTATATTCGC 	1094
----------------------AGATCGACCGTGTTATATTC 	45
----------------------AGATCGACCGTGTTATATT 	6
----------------------AGATCGACCGTGTTATATTCGCT 	26
----------------------AGATCGACCGTGTTATATTCG 	146
-----------------------GATCGACCGTGTTATATTCGCT 	3
-----------------------GATCGACCGTGTTATATTCG 	3
-----------------------GATCGACCGTGTTATATTC 	1
-----------------------GATCGACCGTGTTATATTCGC 	42
------------------------ATCGACCGTGTTATATTCGCT 	1
------------------------ATCGACCGTGTTATATTCG 	48
------------------------ATCGACCGTGTTATATTCGC 	143
-------------------------TCGACCGTGTTATATTCGC 	38
--------------------------CGACCGTGTTATATTCGCT 	3
--------------------------CGACCGTGTTATATTCGCTTGG 	1
-------------------------------------------------------CGAATAATACATGGTTGATCTTT 	4
-------------------------------------------------------CGAATAATACATGGTTGATCTT 	2
--------------------------------------------------------GAATAATACATGGTTGATCTTTT 	17
--------------------------------------------------------GAATAATACATGGTTGATCTTT 	1002
--------------------------------------------------------GAATAATACATGGTTGATC 	3
--------------------------------------------------------GAATAATACATGGTTGATCTT 	93
--------------------------------------------------------GAATAATACATGGTTGATCT 	9
---------------------------------------------------------AATAATACATGGTTGATCT 	19
---------------------------------------------------------AATAATACATGGTTGATCTTTT 	130
---------------------------------------------------------AATAATACATGGTTGATCTTT 	3787
---------------------------------------------------------AATAATACATGGTTGATCTT 	135
----------------------------------------------------------ATAATACATGGTTGATCTTTT 	3
----------------------------------------------------------ATAATACATGGTTGATCTTT 	11
----------------------------------------------------------ATAATACATGGTTGATCTTTTC 	4
-----------------------------------------------------------TAATACATGGTTGATCTTT 	1
------------------------------------------------------------AATACATGGTTGATCTTTT 	1


Overlaps with: MNEST032039 MNEST032040
Overlaps with miRBase pre-miRNAs: mmu-mir-369
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Mus musculus GSM527277-2110 AATAATACATGGTTGATCTTT AGATCGACCGTGTTATATTCG down 2 0


Secondary structure

ACCTCTGCTGGTACTTGAAGGGAGATCGACCGTGTTATATTCGCTTGGCTGACTTCGAATAATACATGGTTGATCTTTTCTCAGTATCAACGCTCAG
-CCTCTGCTGGTACTTGAAGGG 	1
--CTCTGCTGGTACTTGAAGGG 	1
----------------------AGATCGACCGTGTTATATTCG 	232
----------------------AGATCGACCGTGTTATATTCGC 	1635
----------------------AGATCGACCGTGTTATATTCGCTT 	1
----------------------AGATCGACCGTGTTATATTCGCT 	43
----------------------AGATCGACCGTGTTATATTC 	84
----------------------AGATCGACCGTGTTATATT 	6
-----------------------GATCGACCGTGTTATATTCGCT 	4
-----------------------GATCGACCGTGTTATATTCGC 	81
-----------------------GATCGACCGTGTTATATTC 	2
-----------------------GATCGACCGTGTTATATTCG 	5
------------------------ATCGACCGTGTTATATTCGC 	165
------------------------ATCGACCGTGTTATATTCGCT 	3
------------------------ATCGACCGTGTTATATTCG 	69
-------------------------TCGACCGTGTTATATTCGC 	32
-------------------------TCGACCGTGTTATATTCGCT 	2
--------------------------CGACCGTGTTATATTCGCT 	1
-------------------------------------TATTCGCTTGGCTGACTTCGAAT 	1
-------------------------------------------------------CGAATAATACATGGTTGATCTT 	1
-------------------------------------------------------CGAATAATACATGGTTGATCTTT 	3
--------------------------------------------------------GAATAATACATGGTTGATC 	3
--------------------------------------------------------GAATAATACATGGTTGATCTT 	268
--------------------------------------------------------GAATAATACATGGTTGATCTTTT 	32
--------------------------------------------------------GAATAATACATGGTTGATCTTT 	2565
--------------------------------------------------------GAATAATACATGGTTGATCT 	21
---------------------------------------------------------AATAATACATGGTTGATCT 	36
---------------------------------------------------------AATAATACATGGTTGATCTTT 	7269
---------------------------------------------------------AATAATACATGGTTGATCTTTT 	245
---------------------------------------------------------AATAATACATGGTTGATCTT 	296
---------------------------------------------------------AATAATACATGGTTGATCTTTTC 	2
----------------------------------------------------------ATAATACATGGTTGATCTTTTCT 	1
----------------------------------------------------------ATAATACATGGTTGATCTT 	2
----------------------------------------------------------ATAATACATGGTTGATCTTTT 	8
----------------------------------------------------------ATAATACATGGTTGATCTTTTC 	5
----------------------------------------------------------ATAATACATGGTTGATCTTT 	16
-----------------------------------------------------------TAATACATGGTTGATCTTTTCT 	1
-----------------------------------------------------------TAATACATGGTTGATCTTT 	4
------------------------------------------------------------AATACATGGTTGATCTTTT 	6


Overlaps with: MNEST032039 MNEST032040
Overlaps with miRBase pre-miRNAs: mmu-mir-369
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Mus musculus GSM539854 AATAATACATGGTTGATCTTT AGATCGACCGTGTTATATTCG down 2 0


Secondary structure

ACCTCTGCTGGTACTTGAAGGGAGATCGACCGTGTTATATTCGCTTGGCTGACTTCGAATAATACATGGTTGATCTTTTCTCAGTATCAACGCTCAG
----------------------AGATCGACCGTGTTATATTCGC 	8
----------------------AGATCGACCGTGTTATATTCG 	13
----------------------AGATCGACCGTGTTATATT 	2
----------------------AGATCGACCGTGTTATATTCGCT 	1
----------------------AGATCGACCGTGTTATATTC 	9
---------------------------------------------------------AATAATACATGGTTGATCTTTTC 	7
---------------------------------------------------------AATAATACATGGTTGATCTTTT 	8
---------------------------------------------------------AATAATACATGGTTGATCTTT 	122
---------------------------------------------------------AATAATACATGGTTGATCTT 	3
---------------------------------------------------------AATAATACATGGTTGATCT 	1


Overlaps with: MNEST032039 MNEST032040
Overlaps with miRBase pre-miRNAs: mmu-mir-369
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Mus musculus GSM527279-2112 AATAATACATGGTTGATCTTT AGATCGACCGTGTTATATTCG down 2 0


Secondary structure

ACCTCTGCTGGTACTTGAAGGGAGATCGACCGTGTTATATTCGCTTGGCTGACTTCGAATAATACATGGTTGATCTTTTCTCAGTATCAACGCTCAG
---------------------GAGATCGACCGTGTTATATTCG 	2
----------------------AGATCGACCGTGTTATATTCGCTT 	2
----------------------AGATCGACCGTGTTATATTCGCT 	61
----------------------AGATCGACCGTGTTATATTCG 	474
----------------------AGATCGACCGTGTTATATTCGC 	2027
----------------------AGATCGACCGTGTTATATTC 	82
----------------------AGATCGACCGTGTTATATT 	12
-----------------------GATCGACCGTGTTATATTCGCT 	4
-----------------------GATCGACCGTGTTATATTCGC 	62
-----------------------GATCGACCGTGTTATATTCG 	9
------------------------ATCGACCGTGTTATATTCGC 	147
------------------------ATCGACCGTGTTATATTCGCT 	1
------------------------ATCGACCGTGTTATATTCG 	103
-------------------------TCGACCGTGTTATATTCGC 	35
-------------------------TCGACCGTGTTATATTCGCT 	3
--------------------------CGACCGTGTTATATTCGCT 	1
-------------------------------------------------------CGAATAATACATGGTTGATCTTT 	9
--------------------------------------------------------GAATAATACATGGTTGATC 	5
--------------------------------------------------------GAATAATACATGGTTGATCT 	7
--------------------------------------------------------GAATAATACATGGTTGATCTT 	136
--------------------------------------------------------GAATAATACATGGTTGATCTTTT 	27
--------------------------------------------------------GAATAATACATGGTTGATCTTT 	1454
---------------------------------------------------------AATAATACATGGTTGATCT 	39
---------------------------------------------------------AATAATACATGGTTGATCTTTT 	342
---------------------------------------------------------AATAATACATGGTTGATCTT 	341
---------------------------------------------------------AATAATACATGGTTGATCTTT 	9783
----------------------------------------------------------ATAATACATGGTTGATCTTTTC 	9
----------------------------------------------------------ATAATACATGGTTGATCTTT 	12
----------------------------------------------------------ATAATACATGGTTGATCTTTTCT 	1
----------------------------------------------------------ATAATACATGGTTGATCTT 	2
----------------------------------------------------------ATAATACATGGTTGATCTTTT 	4
-----------------------------------------------------------TAATACATGGTTGATCTTTT 	1
-----------------------------------------------------------TAATACATGGTTGATCTTT 	8


Overlaps with: MNEST032039 MNEST032040
Overlaps with miRBase pre-miRNAs: mmu-mir-369
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Mus musculus GSM539874 AATAATACATGGTTGATCTTT AGATCGACCGTGTTATATTCG down 2 0


Secondary structure

ACCTCTGCTGGTACTTGAAGGGAGATCGACCGTGTTATATTCGCTTGGCTGACTTCGAATAATACATGGTTGATCTTTTCTCAGTATCAACGCTCAG
----------------------AGATCGACCGTGTTATATTCGC 	5
----------------------AGATCGACCGTGTTATATT 	3
----------------------AGATCGACCGTGTTATATTCGCTT 	1
----------------------AGATCGACCGTGTTATATTCG 	5
----------------------AGATCGACCGTGTTATATTC 	16
--------------------------------------------------------GAATAATACATGGTTGATCTTT 	4
--------------------------------------------------------GAATAATACATGGTTGATCTT 	1
---------------------------------------------------------AATAATACATGGTTGATCTT 	3
---------------------------------------------------------AATAATACATGGTTGATCTTTTC 	1
---------------------------------------------------------AATAATACATGGTTGATCTTTT 	4
---------------------------------------------------------AATAATACATGGTTGATCTTT 	47
---------------------------------------------------------AATAATACATGGTTGATCT 	1


Overlaps with: MNEST032039 MNEST032040
Overlaps with miRBase pre-miRNAs: mmu-mir-369
HuntMi prediction: true miRNA