miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: AATATAACACAGATGGCCTGT

selected species: Mus musculus

13 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Mus musculus	GSM527274-2107	AATATAACACAGATGGCCTGT	AGGTTGTCTGTGATGAGTTCG	down	3	0

Secondary structure

TCAACACTGGGTACTTGAGGAGAGGTTGTCTGTGATGAGTTCGCTTTATTAATGACGAATATAACACAGATGGCCTGTTTTCAATACCACCTGCCAC
--AACACTGGGTACTTGAGGAG 	2
----------------------AGGTTGTCTGTGATGAGTTCG 	11
----------------------------------------------------TGACGAATATAACACAGATGGCCTGT 	6
----------------------------------------------------TGACGAATATAACACAGATGGCCT 	1
-------------------------------------------------------CGAATATAACACAGATGGCCTGT 	8
--------------------------------------------------------GAATATAACACAGATGGCCTG 	1
--------------------------------------------------------GAATATAACACAGATGGCCTGTT 	1
--------------------------------------------------------GAATATAACACAGATGGCCTGT 	5
---------------------------------------------------------AATATAACACAGATGGCCTGTTT 	21
---------------------------------------------------------AATATAACACAGATGGCCTGTT 	55
---------------------------------------------------------AATATAACACAGATGGCCT 	4
---------------------------------------------------------AATATAACACAGATGGCCTG 	13
---------------------------------------------------------AATATAACACAGATGGCCTGTTTT 	7
---------------------------------------------------------AATATAACACAGATGGCCTGT 	2220
----------------------------------------------------------ATATAACACAGATGGCCTGTTT 	12
----------------------------------------------------------ATATAACACAGATGGCCTGT 	7
-----------------------------------------------------------TATAACACAGATGGCCTGTTTT 	7
-----------------------------------------------------------TATAACACAGATGGCCTGTTT 	11
-----------------------------------------------------------TATAACACAGATGGCCTGT 	7
------------------------------------------------------------ATAACACAGATGGCCTGTTT 	1

Overlaps with: MNEST032904
Overlaps with miRBase pre-miRNAs: mmu-mir-410 cgr-mir-410 rno-mir-410
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Mus musculus	GSM527280	AATATAACACAGATGGCCTGT	AGGTTGTCTGTGATGAGTTCG	down	3	0

Secondary structure

TCAACACTGGGTACTTGAGGAGAGGTTGTCTGTGATGAGTTCGCTTTATTAATGACGAATATAACACAGATGGCCTGTTTTCAATACCACCTGCCAC
----------------------AGGTTGTCTGTGATGAGTTCG 	3
-------------------------------------------------------CGAATATAACACAGATGGCCTGT 	1
---------------------------------------------------------AATATAACACAGATGGCCTGT 	1096
---------------------------------------------------------AATATAACACAGATGGCCTGTTT 	8
---------------------------------------------------------AATATAACACAGATGGCCTGTT 	21
---------------------------------------------------------AATATAACACAGATGGCCT 	1
---------------------------------------------------------AATATAACACAGATGGCCTGTTTT 	1
---------------------------------------------------------AATATAACACAGATGGCCTG 	2
----------------------------------------------------------ATATAACACAGATGGCCTGT 	2
----------------------------------------------------------ATATAACACAGATGGCCTGTTTT 	1
----------------------------------------------------------ATATAACACAGATGGCCTGTTT 	5
-----------------------------------------------------------TATAACACAGATGGCCTGT 	4
-----------------------------------------------------------TATAACACAGATGGCCTGTTT 	2

Overlaps with: MNEST032904
Overlaps with miRBase pre-miRNAs: mmu-mir-410 cgr-mir-410 rno-mir-410
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Mus musculus	GSM539855	AATATAACACAGATGGCCTGT	AGGTTGTCTGTGATGAGTTCG	down	3	0

Secondary structure

TCAACACTGGGTACTTGAGGAGAGGTTGTCTGTGATGAGTTCGCTTTATTAATGACGAATATAACACAGATGGCCTGTTTTCAATACCACCTGCCAC
-CAACACTGGGTACTTGAGGAG 	6
--AACACTGGGTACTTGAGGAG 	1
---------------------------------------------------------AATATAACACAGATGGCCTGT 	20
---------------------------------------------------------AATATAACACAGATGGCCTG 	1
---------------------------------------------------------AATATAACACAGATGGCCTGTT 	1
---------------------------------------------------------AATATAACACAGATGGCCT 	2

Overlaps with: MNEST032904
Overlaps with miRBase pre-miRNAs: mmu-mir-410 cgr-mir-410 rno-mir-410
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Mus musculus	GSM527276	AATATAACACAGATGGCCTGT	AGGTTGTCTGTGATGAGTTCG	down	3	0

Secondary structure

TCAACACTGGGTACTTGAGGAGAGGTTGTCTGTGATGAGTTCGCTTTATTAATGACGAATATAACACAGATGGCCTGTTTTCAATACCACCTGCCAC
----------------------AGGTTGTCTGTGATGAGTTCG 	19
-----------------------GGTTGTCTGTGATGAGTTCG 	1
----------------------------------------------------TGACGAATATAACACAGATGGCCTGT 	1
-------------------------------------------------------CGAATATAACACAGATGGCCTGT 	1
--------------------------------------------------------GAATATAACACAGATGGCCTGTT 	2
---------------------------------------------------------AATATAACACAGATGGCCTGT 	2163
---------------------------------------------------------AATATAACACAGATGGCCTGTTT 	29
---------------------------------------------------------AATATAACACAGATGGCCTGTT 	43
---------------------------------------------------------AATATAACACAGATGGCCT 	10
---------------------------------------------------------AATATAACACAGATGGCCTGTTTT 	9
---------------------------------------------------------AATATAACACAGATGGCCTG 	9
----------------------------------------------------------ATATAACACAGATGGCCTGT 	6
----------------------------------------------------------ATATAACACAGATGGCCTGTTTT 	2
----------------------------------------------------------ATATAACACAGATGGCCTGTT 	1
----------------------------------------------------------ATATAACACAGATGGCCTGTTT 	17
-----------------------------------------------------------TATAACACAGATGGCCTGTTTT 	1
-----------------------------------------------------------TATAACACAGATGGCCTGT 	1
-----------------------------------------------------------TATAACACAGATGGCCTGTTT 	5

Overlaps with: MNEST032904
Overlaps with miRBase pre-miRNAs: mmu-mir-410 cgr-mir-410 rno-mir-410
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Mus musculus	GSM539869	AATATAACACAGATGGCCTGT	AGGTTGTCTGTGATGAGTTCG	down	3	0

Secondary structure

TCAACACTGGGTACTTGAGGAGAGGTTGTCTGTGATGAGTTCGCTTTATTAATGACGAATATAACACAGATGGCCTGTTTTCAATACCACCTGCCAC
TCAACACTGGGTACTTGAGGAGA 	1
TCAACACTGGGTACTTGAG 	1
-CAACACTGGGTACTTGAGGAG 	14
---------------------------------------------------ATGACGAATATAACACAGATGGC 	1
----------------------------------------------------TGACGAATATAACACAGATGGCCT 	1
--------------------------------------------------------GAATATAACACAGATGGCCTGT 	2
---------------------------------------------------------AATATAACACAGATGGCCTGTTTTC 	1
---------------------------------------------------------AATATAACACAGATGGCCTGTTTT 	1
---------------------------------------------------------AATATAACACAGATGGCCTGTTT 	6
---------------------------------------------------------AATATAACACAGATGGCCTGTT 	56
---------------------------------------------------------AATATAACACAGATGGCCTGT 	981
---------------------------------------------------------AATATAACACAGATGGCCTG 	99
---------------------------------------------------------AATATAACACAGATGGCCT 	48
----------------------------------------------------------ATATAACACAGATGGCCTGTTT 	1
----------------------------------------------------------ATATAACACAGATGGCCTGT 	3
-----------------------------------------------------------TATAACACAGATGGCCTGTTT 	1

Overlaps with: MNEST032904
Overlaps with miRBase pre-miRNAs: mmu-mir-410 cgr-mir-410 rno-mir-410
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Mus musculus	GSM527277-2110	AATATAACACAGATGGCCTGT	AGGTTGTCTGTGATGAGTTCG	down	3	0

Secondary structure

TCAACACTGGGTACTTGAGGAGAGGTTGTCTGTGATGAGTTCGCTTTATTAATGACGAATATAACACAGATGGCCTGTTTTCAATACCACCTGCCAC
TCAACACTGGGTACTTGAGGAG 	1
----------------------AGGTTGTCTGTGATGAGTTC 	1
----------------------AGGTTGTCTGTGATGAGTTCG 	20
------------------------GTTGTCTGTGATGAGTTCG 	2
----------------------------------------------------TGACGAATATAACACAGATGGCCTGT 	1
-------------------------------------------------------CGAATATAACACAGATGGCCTGT 	2
--------------------------------------------------------GAATATAACACAGATGGCCTGT 	5
---------------------------------------------------------AATATAACACAGATGGCCT 	14
---------------------------------------------------------AATATAACACAGATGGCCTGTTT 	57
---------------------------------------------------------AATATAACACAGATGGCCTGTT 	91
---------------------------------------------------------AATATAACACAGATGGCCTG 	17
---------------------------------------------------------AATATAACACAGATGGCCTGTTTT 	20
---------------------------------------------------------AATATAACACAGATGGCCTGT 	4452
----------------------------------------------------------ATATAACACAGATGGCCTGTT 	1
----------------------------------------------------------ATATAACACAGATGGCCTGT 	3
----------------------------------------------------------ATATAACACAGATGGCCTGTTT 	23
----------------------------------------------------------ATATAACACAGATGGCCTGTTTT 	6
-----------------------------------------------------------TATAACACAGATGGCCTGTT 	1
-----------------------------------------------------------TATAACACAGATGGCCTGTTT 	12
-----------------------------------------------------------TATAACACAGATGGCCTGTTTT 	5
-----------------------------------------------------------TATAACACAGATGGCCTGT 	11
--------------------------------------------------------------AACACAGATGGCCTGTTTT 	1

Overlaps with: MNEST032904
Overlaps with miRBase pre-miRNAs: mmu-mir-410 cgr-mir-410 rno-mir-410
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Mus musculus	GSM539878	AATATAACACAGATGGCCTGT	AGGTTGTCTGTGATGAGTTCG	down	3	0

Secondary structure

TCAACACTGGGTACTTGAGGAGAGGTTGTCTGTGATGAGTTCGCTTTATTAATGACGAATATAACACAGATGGCCTGTTTTCAATACCACCTGCCAC
-CAACACTGGGTACTTGAGGAG 	2
---------------------------------------------------------AATATAACACAGATGGCCTGT 	9
---------------------------------------------------------AATATAACACAGATGGCCTG 	1
---------------------------------------------------------AATATAACACAGATGGCCTGTT 	1
---------------------------------------------------------AATATAACACAGATGGCCT 	2

Overlaps with: MNEST032904
Overlaps with miRBase pre-miRNAs: mmu-mir-410 cgr-mir-410 rno-mir-410
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Mus musculus	GSM539873	AATATAACACAGATGGCCTGT	AGGTTGTCTGTGATGAGTTCG	down	3	0

Secondary structure

TCAACACTGGGTACTTGAGGAGAGGTTGTCTGTGATGAGTTCGCTTTATTAATGACGAATATAACACAGATGGCCTGTTTTCAATACCACCTGCCAC
-CAACACTGGGTACTTGAGGAG 	1
---------------------------------------------------------AATATAACACAGATGGCCTGT 	11

Overlaps with: MNEST032904
Overlaps with miRBase pre-miRNAs: mmu-mir-410 cgr-mir-410 rno-mir-410
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Mus musculus	GSM539867	AATATAACACAGATGGCCTGT	AGGTTGTCTGTGATGAGTTCG	down	3	0

Secondary structure

TCAACACTGGGTACTTGAGGAGAGGTTGTCTGTGATGAGTTCGCTTTATTAATGACGAATATAACACAGATGGCCTGTTTTCAATACCACCTGCCAC
TCAACACTGGGTACTTGAGGAG 	5
-CAACACTGGGTACTTGAGGAGA 	1
-CAACACTGGGTACTTGAGGAG 	102
-CAACACTGGGTACTTGAGG 	2
--AACACTGGGTACTTGAGGAGA 	1
--AACACTGGGTACTTGAGGAG 	25
---ACACTGGGTACTTGAGGAG 	5
----CACTGGGTACTTGAGGAGA 	1
----------------------AGGTTGTCTGTGATGAGTTC 	1
----------------------AGGTTGTCTGTGATGAGTTCG 	11
----------------------AGGTTGTCTGTGATGAGTT 	1
--------------------------------------------------------GAATATAACACAGATGGCCTGT 	1
---------------------------------------------------------AATATAACACAGATGGCCTGTTTT 	2
---------------------------------------------------------AATATAACACAGATGGCCTGTTT 	13
---------------------------------------------------------AATATAACACAGATGGCCTGT 	1160
---------------------------------------------------------AATATAACACAGATGGCCTG 	29
---------------------------------------------------------AATATAACACAGATGGCCTGTT 	67
---------------------------------------------------------AATATAACACAGATGGCCT 	13
----------------------------------------------------------ATATAACACAGATGGCCTGT 	2
----------------------------------------------------------ATATAACACAGATGGCCTG 	1

Overlaps with: MNEST032904
Overlaps with miRBase pre-miRNAs: mmu-mir-410 cgr-mir-410 rno-mir-410
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Mus musculus	GSM539876	AATATAACACAGATGGCCTGT	AGGTTGTCTGTGATGAGTTCG	down	3	0

Secondary structure

TCAACACTGGGTACTTGAGGAGAGGTTGTCTGTGATGAGTTCGCTTTATTAATGACGAATATAACACAGATGGCCTGTTTTCAATACCACCTGCCAC
-CAACACTGGGTACTTGAGGAG 	3
--AACACTGGGTACTTGAGGAG 	1
---------------------------------------------------------AATATAACACAGATGGCCTGT 	9
---------------------------------------------------------AATATAACACAGATGGCCTG 	1
---------------------------------------------------------AATATAACACAGATGGCCT 	7

Overlaps with: MNEST032904
Overlaps with miRBase pre-miRNAs: mmu-mir-410 cgr-mir-410 rno-mir-410
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Mus musculus	GSM539854	AATATAACACAGATGGCCTGT	AGGTTGTCTGTGATGAGTTCG	down	3	0

Secondary structure

TCAACACTGGGTACTTGAGGAGAGGTTGTCTGTGATGAGTTCGCTTTATTAATGACGAATATAACACAGATGGCCTGTTTTCAATACCACCTGCCAC
-CAACACTGGGTACTTGAGGAG 	7
---------------------------------------------------------AATATAACACAGATGGCCTGTT 	4
---------------------------------------------------------AATATAACACAGATGGCCTGT 	94
---------------------------------------------------------AATATAACACAGATGGCCTG 	2
---------------------------------------------------------AATATAACACAGATGGCCT 	6

Overlaps with: MNEST032904
Overlaps with miRBase pre-miRNAs: mmu-mir-410 cgr-mir-410 rno-mir-410
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Mus musculus	GSM527279-2112	AATATAACACAGATGGCCTGT	AGGTTGTCTGTGATGAGTTCG	down	3	0

Secondary structure

TCAACACTGGGTACTTGAGGAGAGGTTGTCTGTGATGAGTTCGCTTTATTAATGACGAATATAACACAGATGGCCTGTTTTCAATACCACCTGCCAC
-CAACACTGGGTACTTGAGGAG 	1
---ACACTGGGTACTTGAGGAG 	1
----------------------AGGTTGTCTGTGATGAGTTCGC 	1
----------------------AGGTTGTCTGTGATGAGTTCG 	26
-----------------------GGTTGTCTGTGATGAGTTCG 	1
------------------------GTTGTCTGTGATGAGTTCG 	1
----------------------------------------------------TGACGAATATAACACAGATGGC 	1
----------------------------------------------------TGACGAATATAACACAGATGGCCTGT 	1
----------------------------------------------------TGACGAATATAACACAGATGGCCT 	2
-------------------------------------------------------CGAATATAACACAGATGGCCTGT 	7
--------------------------------------------------------GAATATAACACAGATGGCCTGTT 	1
--------------------------------------------------------GAATATAACACAGATGGCCTGT 	3
--------------------------------------------------------GAATATAACACAGATGGCCTGTTT 	2
---------------------------------------------------------AATATAACACAGATGGCCTGTTT 	58
---------------------------------------------------------AATATAACACAGATGGCCTGTT 	103
---------------------------------------------------------AATATAACACAGATGGCCT 	25
---------------------------------------------------------AATATAACACAGATGGCCTG 	28
---------------------------------------------------------AATATAACACAGATGGCCTGTTTT 	7
---------------------------------------------------------AATATAACACAGATGGCCTGT 	5362
----------------------------------------------------------ATATAACACAGATGGCCTGTTT 	18
----------------------------------------------------------ATATAACACAGATGGCCTGTTTT 	4
----------------------------------------------------------ATATAACACAGATGGCCTGTT 	1
----------------------------------------------------------ATATAACACAGATGGCCTGT 	7
-----------------------------------------------------------TATAACACAGATGGCCTGTTTT 	1
-----------------------------------------------------------TATAACACAGATGGCCTGTT 	1
-----------------------------------------------------------TATAACACAGATGGCCTGTTT 	6
-----------------------------------------------------------TATAACACAGATGGCCTGT 	12
------------------------------------------------------------ATAACACAGATGGCCTGTTT 	3
--------------------------------------------------------------AACACAGATGGCCTGTTTT 	1

Overlaps with: MNEST032904
Overlaps with miRBase pre-miRNAs: mmu-mir-410 cgr-mir-410 rno-mir-410
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Mus musculus	GSM539874	AATATAACACAGATGGCCTGT	AGGTTGTCTGTGATGAGTTCG	down	3	0

Secondary structure

TCAACACTGGGTACTTGAGGAGAGGTTGTCTGTGATGAGTTCGCTTTATTAATGACGAATATAACACAGATGGCCTGTTTTCAATACCACCTGCCAC
TCAACACTGGGTACTTGAGGAG 	1
-CAACACTGGGTACTTGAGGAG 	6
-CAACACTGGGTACTTGAGG 	1
--AACACTGGGTACTTGAGGAG 	1
----------------------AGGTTGTCTGTGATGAGTT 	7
---------------------------------------------------------AATATAACACAGATGGCCTGT 	56
---------------------------------------------------------AATATAACACAGATGGCCTG 	6
---------------------------------------------------------AATATAACACAGATGGCCTGTT 	1
---------------------------------------------------------AATATAACACAGATGGCCT 	43

Overlaps with: MNEST032904
Overlaps with miRBase pre-miRNAs: mmu-mir-410 cgr-mir-410 rno-mir-410
HuntMi prediction: true miRNA