miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: AATCACAGTCAACTGTTGGC

selected species: Caenorhabditis elegans



9 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Caenorhabditis elegans GSM427344-5691 AATCACAGTCAACTGTTGGCA CCTTCAGTTGCCTCGTGATCCG down 5 1


Secondary structure

CTTCGGACCACGCCTTCAGTTGCCTCGTGATCCGCCAAACACAATAAATGGACGAATCACAGTCAACTGTTGGCATGGTGCTCG
------------CCTTCAGTTGCCTCGTGATCCG 	3
----------------------------------CCAAACACAATAAATGGACG 	5
----------------------------------CCAAACACAATAAATGGACGA 	1
------------------------------------------------------AATCACAGTCAACTGTTGGCAT 	103
------------------------------------------------------AATCACAGTCAACTGTTGGCA 	1052
------------------------------------------------------AATCACAGTCAACTGTTGG 	1
------------------------------------------------------AATCACAGTCAACTGTTGGC 	1

Overlaps with: MNEST038354
Overlaps with miRBase pre-miRNAs: cel-mir-250
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Caenorhabditis elegans GSM427332-5684 AATCACAGTCAACTGTTGGCA CCTTCAGTTGCCTCGTGATCCG down 5 1


Secondary structure

CTTCGGACCACGCCTTCAGTTGCCTCGTGATCCGCCAAACACAATAAATGGACGAATCACAGTCAACTGTTGGCATGGTGCTCG
------------CCTTCAGTTGCCTCGTGATCCG 	14
------------CCTTCAGTTGCCTCGTGATCC 	1
----------------------------------CCAAACACAATAAATGGACG 	5
------------------------------------------------------AATCACAGTCAACTGTTGGCAT 	156
------------------------------------------------------AATCACAGTCAACTGTTGGCA 	3391
------------------------------------------------------AATCACAGTCAACTGTTGGC 	10
------------------------------------------------------AATCACAGTCAACTGTTGG 	1
-------------------------------------------------------ATCACAGTCAACTGTTGGCA 	3

Overlaps with: MNEST038354
Overlaps with miRBase pre-miRNAs: cel-mir-250
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Caenorhabditis elegans GSM378784 AATCACAGTCAACTGTTGGC CTTCAGTTGCCTCGTGATCCG down 4 1


Secondary structure

TTCGGACCACGCCTTCAGTTGCCTCGTGATCCGCCAAACACAATAAATGGACGAATCACAGTCAACTGTTGGCATGGTGCTC
-----------CCTTCAGTTGCCTCGTGATCCG 	2
-----------CCTTCAGTTGCCTCGTGATCC 	1
-----------------------------------------------------AATCACAGTCAACTGTTGGCATG 	1
-----------------------------------------------------AATCACAGTCAACTGTTGGCAT 	63
-----------------------------------------------------AATCACAGTCAACTGTTGGC 	245
------------------------------------------------------ATCACAGTCAACTGTTGGCA 	1
------------------------------------------------------ATCACAGTCAACTGTTGGC 	1

Overlaps with: MNEST038354
Overlaps with miRBase pre-miRNAs: cel-mir-250
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Caenorhabditis elegans GSM427346-5695 AATCACAGTCAACTGTTGGCA CCTTCAGTTGCCTCGTGATCCG down 5 1


Secondary structure

CTTCGGACCACGCCTTCAGTTGCCTCGTGATCCGCCAAACACAATAAATGGACGAATCACAGTCAACTGTTGGCATGGTGCTCG
------------CCTTCAGTTGCCTCGTGATCCG 	1
----------------------------------------------------CGAATCACAGTCAACTGTTGGCA 	1
------------------------------------------------------AATCACAGTCAACTGTTGGCAT 	54
------------------------------------------------------AATCACAGTCAACTGTTGGCA 	624
------------------------------------------------------AATCACAGTCAACTGTTGGC 	6

Overlaps with: MNEST038354
Overlaps with miRBase pre-miRNAs: cel-mir-250
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Caenorhabditis elegans GSM427345-5693 AATCACAGTCAACTGTTGGCA CCTTCAGTTGCCTCGTGATCCG down 5 1


Secondary structure

CTTCGGACCACGCCTTCAGTTGCCTCGTGATCCGCCAAACACAATAAATGGACGAATCACAGTCAACTGTTGGCATGGTGCTCG
------------CCTTCAGTTGCCTCGTGATCCG 	3
------------------------------------------------------AATCACAGTCAACTGTTGGCAT 	79
------------------------------------------------------AATCACAGTCAACTGTTGGCA 	770
------------------------------------------------------AATCACAGTCAACTGTTGGC 	8

Overlaps with: MNEST038354
Overlaps with miRBase pre-miRNAs: cel-mir-250
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Caenorhabditis elegans GSM427297-5679 AATCACAGTCAACTGTTGGCA CCTTCAGTTGCCTCGTGATCCG down 5 1


Secondary structure

CTTCGGACCACGCCTTCAGTTGCCTCGTGATCCGCCAAACACAATAAATGGACGAATCACAGTCAACTGTTGGCATGGTGCTCG
------------------------------------------------------AATCACAGTCAACTGTTGGCAT 	207
------------------------------------------------------AATCACAGTCAACTGTTGGCA 	1487
------------------------------------------------------AATCACAGTCAACTGTTGGC 	3
------------------------------------------------------AATCACAGTCAACTGTTGG 	2
--------------------------------------------------------TCACAGTCAACTGTTGGCAT 	1
----------------------------------------------------------ACAGTCAACTGTTGGCATG 	1

Overlaps with: MNEST038354
Overlaps with miRBase pre-miRNAs: cel-mir-250
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Caenorhabditis elegans GSM297751-9445 AATCACAGTCAACTGTTGGCA CCTTCAGTTGCCTCGTGATCCG down 5 1


Secondary structure

CTTCGGACCACGCCTTCAGTTGCCTCGTGATCCGCCAAACACAATAAATGGACGAATCACAGTCAACTGTTGGCATGGTGCTCG
------------CCTTCAGTTGCCTCGTGAT 	1
------------CCTTCAGTTGCCTCGTGATC 	1
------------CCTTCAGTTGCCTCGTGATCCG 	15
------------CCTTCAGTTGCCTCGTGATCC 	5
----------------------------------CCAAACACAATAAATGGACG 	1
-----------------------------------------------------GAATCACAGTCAACTGTTGGCA 	2
------------------------------------------------------AATCACAGTCAACTGTTGGCAT 	530
------------------------------------------------------AATCACAGTCAACTGTTGGC 	760
------------------------------------------------------AATCACAGTCAACTGTTGGCATG 	3
------------------------------------------------------AATCACAGTCAACTGTTGG 	356
------------------------------------------------------AATCACAGTCAACTGTTGGCA 	4635
-------------------------------------------------------ATCACAGTCAACTGTTGGCAT 	3
-------------------------------------------------------ATCACAGTCAACTGTTGGCA 	7
---------------------------------------------------------CACAGTCAACTGTTGGCAT 	1

Overlaps with: MNEST038354
Overlaps with miRBase pre-miRNAs: cel-mir-250
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Caenorhabditis elegans GSM297752-9446 AATCACAGTCAACTGTTGGCA CCTTCAGTTGCCTCGTGATCCG down 5 1


Secondary structure

CTTCGGACCACGCCTTCAGTTGCCTCGTGATCCGCCAAACACAATAAATGGACGAATCACAGTCAACTGTTGGCATGGTGCTCG
------------CCTTCAGTTGCCTCGTGAT 	1
------------CCTTCAGTTGCCTCGTGATCC 	5
------------CCTTCAGTTGCCTCGTGATCCG 	20
-------------CTTCAGTTGCCTCGTGATCCG 	1
----------------------------------CCAAACACAATAAATGGACG 	2
------------------------------------------------------AATCACAGTCAACTGTTGGCAT 	844
------------------------------------------------------AATCACAGTCAACTGTTGGC 	1192
------------------------------------------------------AATCACAGTCAACTGTTGGCA 	5844
------------------------------------------------------AATCACAGTCAACTGTTGG 	444
-------------------------------------------------------ATCACAGTCAACTGTTGGCAT 	1
-------------------------------------------------------ATCACAGTCAACTGTTGGCA 	5
-------------------------------------------------------ATCACAGTCAACTGTTGGC 	4
--------------------------------------------------------TCACAGTCAACTGTTGGCAT 	1
--------------------------------------------------------TCACAGTCAACTGTTGGCA 	1
---------------------------------------------------------CACAGTCAACTGTTGGCAT 	10

Overlaps with: MNEST038354
Overlaps with miRBase pre-miRNAs: cel-mir-250
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Caenorhabditis elegans GSM427301-5681 AATCACAGTCAACTGTTGGCA CCTTCAGTTGCCTCGTGATCCG down 5 1


Secondary structure

CTTCGGACCACGCCTTCAGTTGCCTCGTGATCCGCCAAACACAATAAATGGACGAATCACAGTCAACTGTTGGCATGGTGCTCG
------------CCTTCAGTTGCCTCGTGATCCG 	1
------------------------------------------------------AATCACAGTCAACTGTTGGCAT 	307
------------------------------------------------------AATCACAGTCAACTGTTGGCA 	1489
------------------------------------------------------AATCACAGTCAACTGTTGGC 	6
------------------------------------------------------AATCACAGTCAACTGTTGG 	1
--------------------------------------------------------TCACAGTCAACTGTTGGCA 	1

Overlaps with: MNEST038354
Overlaps with miRBase pre-miRNAs: cel-mir-250
HuntMi prediction: true miRNA