miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: AATCATACAGGGACATCCAGTT

selected species: Homo sapiens

4 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Homo sapiens	GSM494810_Normal_2	AATCATACAGGGACATCCAGTT	GTGGTTATCCCTGCTGTGTTCG	down	4	2

Secondary structure

GTCAGCCTTCGGTACTTGAAGAGTGGTTATCCCTGCTGTGTTCGCTTAATTTATGACGAATCATACAGGGACATCCAGTTTTTCAGTATCAAATACTGC
----------------------------------------------------------AATCATACAGGGACATCCAGTT 	10
----------------------------------------------------------AATCATACAGGGACATCCAGTTT 	2
----------------------------------------------------------AATCATACAGGGACATCCAGTTTT 	1
----------------------------------------------------------AATCATACAGGGACATCCAGT 	1

Overlaps with: MNEST028675 MNEST031023
Overlaps with miRBase pre-miRNAs: ppy-mir-487a hsa-mir-487a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Homo sapiens	GSM651908	AATCATACAGGGACATCCAGTT	GTGGTTATCCCTGCTGTGTTCG	down	4	2

Secondary structure

GTCAGCCTTCGGTACTTGAAGAGTGGTTATCCCTGCTGTGTTCGCTTAATTTATGACGAATCATACAGGGACATCCAGTTTTTCAGTATCAAATACTGC
----------------------GTGGTTATCCCTGCTGTGTTC 	9
----------------------GTGGTTATCCCTGCTGTGTTCG 	1
----------------------------------------------------------AATCATACAGGGACATCCAGTT 	10
----------------------------------------------------------AATCATACAGGGACATCCAG 	5
----------------------------------------------------------AATCATACAGGGACATCCAGT 	2
----------------------------------------------------------AATCATACAGGGACATCCAGTTT 	2
----------------------------------------------------------AATCATACAGGGACATCCA 	1

Overlaps with: MNEST028675 MNEST031023
Overlaps with miRBase pre-miRNAs: ppy-mir-487a hsa-mir-487a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Homo sapiens	GSM531982	AATCATACAGGGACATCCAGTT	GTGGTTATCCCTGCTGTGTTCG	down	4	2

Secondary structure

GTCAGCCTTCGGTACTTGAAGAGTGGTTATCCCTGCTGTGTTCGCTTAATTTATGACGAATCATACAGGGACATCCAGTTTTTCAGTATCAAATACTGC
--CAGCCTTCGGTACTTGAAGA 	1
----------------------GTGGTTATCCCTGCTGTGTTCG 	6
----------------------GTGGTTATCCCTGCTGTGTTC 	3
----------------------------------------------------------AATCATACAGGGACATCCAGTTT 	39
----------------------------------------------------------AATCATACAGGGACATCCAGTT 	351
----------------------------------------------------------AATCATACAGGGACATCCAGT 	26
----------------------------------------------------------AATCATACAGGGACATCCAG 	6
----------------------------------------------------------AATCATACAGGGACATCCAGTTTT 	2
----------------------------------------------------------AATCATACAGGGACATCCA 	2
-----------------------------------------------------------ATCATACAGGGACATCCAGTTT 	4
-----------------------------------------------------------ATCATACAGGGACATCCAGTT 	4
-----------------------------------------------------------ATCATACAGGGACATCCAGT 	2
--------------------------------------------------------------ATACAGGGACATCCAGTTT 	1

Overlaps with: MNEST028675 MNEST031023
Overlaps with miRBase pre-miRNAs: ppy-mir-487a hsa-mir-487a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Homo sapiens	GSM531975	AATCATACAGGGACATCCAGTT	GTGGTTATCCCTGCTGTGTTCG	down	4	2

Secondary structure

GTCAGCCTTCGGTACTTGAAGAGTGGTTATCCCTGCTGTGTTCGCTTAATTTATGACGAATCATACAGGGACATCCAGTTTTTCAGTATCAAATACTGC
----------------------------------------------------------AATCATACAGGGACATCCAGTTT 	4
----------------------------------------------------------AATCATACAGGGACATCCAGTT 	6

Overlaps with: MNEST028675 MNEST031023
Overlaps with miRBase pre-miRNAs: ppy-mir-487a hsa-mir-487a
HuntMi prediction: true miRNA