miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AATGGATTTTTGGAGCAGG

selected species: Homo sapiens



8 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Homo sapiens GSM565979-9647 AATGGATTTTTGGAGCAGG TGACCCAAAGGAAATCAATCC up 4 2


Secondary structure

TTGTATCCTTGAATGGATTTTTGGAGCAGGAGTGGACACCTGACCCAAAGGAAATCAATCCATAGGCTA
-----------AATGGATTTTTGGAGCAGG 	11
------------ATGGATTTTTGGAGCAGGA 	1



HuntMi prediction: not a miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Homo sapiens GSM494809_Normal_1 AATGGATTTTTGGAGCAGG TGACCCAAAGGAAATCAATCC up 4 2


Secondary structure

TTGTATCCTTGAATGGATTTTTGGAGCAGGAGTGGACACCTGACCCAAAGGAAATCAATCCATAGGCTA
----------GAATGGATTTTTGGAGCAGG 	1
-----------AATGGATTTTTGGAGCAGGA 	13
-----------AATGGATTTTTGGAGCAGG 	1304
-----------AATGGATTTTTGGAGCAGGAG 	1
------------ATGGATTTTTGGAGCAGGA 	7



HuntMi prediction: not a miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Homo sapiens GSM565978-9532 AATGGATTTTTGGAGCAGG TGACCCAAAGGAAATCAATCC up 4 2


Secondary structure

TTGTATCCTTGAATGGATTTTTGGAGCAGGAGTGGACACCTGACCCAAAGGAAATCAATCCATAGGCTA
-----------AATGGATTTTTGGAGCAGG 	7



HuntMi prediction: not a miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Homo sapiens GSM531982 AATGGATTTTTGGAGCAGG TGACCCAAAGGAAATCAATCC up 4 2


Secondary structure

TTGTATCCTTGAATGGATTTTTGGAGCAGGAGTGGACACCTGACCCAAAGGAAATCAATCCATAGGCTA
-----------AATGGATTTTTGGAGCAGG 	9



HuntMi prediction: not a miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Homo sapiens GSM494811_K562 AATGGATTTTTGGAGCAGG TGACCCAAAGGAAATCAATCC up 4 2


Secondary structure

TTGTATCCTTGAATGGATTTTTGGAGCAGGAGTGGACACCTGACCCAAAGGAAATCAATCCATAGGCTA
-----------AATGGATTTTTGGAGCAGG 	235
-----------AATGGATTTTTGGAGCAGGA 	3
------------ATGGATTTTTGGAGCAGGA 	3



HuntMi prediction: not a miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Homo sapiens GSM651907 AATGGATTTTTGGAGCAGG TGACCCAAAGGAAATCAATCC up 4 2


Secondary structure

TTGTATCCTTGAATGGATTTTTGGAGCAGGAGTGGACACCTGACCCAAAGGAAATCAATCCATAGGCTA
-----------AATGGATTTTTGGAGCAGG 	28



HuntMi prediction: not a miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Homo sapiens GSM494812_HL60 AATGGATTTTTGGAGCAGG TGACCCAAAGGAAATCAATCC up 4 2


Secondary structure

TTGTATCCTTGAATGGATTTTTGGAGCAGGAGTGGACACCTGACCCAAAGGAAATCAATCCATAGGCTA
----------GAATGGATTTTTGGAGCAGG 	1
-----------AATGGATTTTTGGAGCAGG 	473
-----------AATGGATTTTTGGAGCAGGA 	2
------------ATGGATTTTTGGAGCAGGA 	1



HuntMi prediction: not a miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Homo sapiens GSM531986-13294 AATGGATTTTTGGAGCAGG TGACCCAAAGGAAATCAATCC up 4 2


Secondary structure

TTGTATCCTTGAATGGATTTTTGGAGCAGGAGTGGACACCTGACCCAAAGGAAATCAATCCATAGGCTA
-----------AATGGATTTTTGGAGCAGG 	55
-----------AATGGATTTTTGGAGCAGGAG 	1



HuntMi prediction: not a miRNA