miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

miRNEST 2.0: an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: AATGTGTAGCAAAAGACAGGAT

selected species: Mus musculus

18 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Mus musculus	GSM527274-2107	AATGTGTAGCAAAAGACAGGAT	CATGCCTTTTGCTCTGCACTCA	down	4	1

Secondary structure

AAGTAACCAAATAGATACCCACCATGCCTTTTGCTCTGCACTCAGTAAATAATAATTTGTGAATGTGTAGCAAAAGACAGGATGGGGATCCATTAAATCCCA
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGA 	8
-------------------------------------------------------------AATGTGTAGCAAAAGACAG 	1
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGAT 	22
-------------------------------------------------------------AATGTGTAGCAAAAGACAGG 	2

Overlaps with: MNEST032197 MNEST032198
Overlaps with miRBase pre-miRNAs: mmu-mir-511
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Mus musculus	GSM527280	AATGTGTAGCAAAAGACAGGAT	CATGCCTTTTGCTCTGCACTCA	down	4	1

Secondary structure

AAGTAACCAAATAGATACCCACCATGCCTTTTGCTCTGCACTCAGTAAATAATAATTTGTGAATGTGTAGCAAAAGACAGGATGGGGATCCATTAAATCCCA
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGAT 	6
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGA 	3

Overlaps with: MNEST032197 MNEST032198
Overlaps with miRBase pre-miRNAs: mmu-mir-511
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Mus musculus	GSM539877-5198	AATGTGTAGCAAAAGACAGGAT	CATGCCTTTTGCTCTGCACTCA	down	4	1

Secondary structure

AAGTAACCAAATAGATACCCACCATGCCTTTTGCTCTGCACTCAGTAAATAATAATTTGTGAATGTGTAGCAAAAGACAGGATGGGGATCCATTAAATCCCA
----------------------CATGCCTTTTGCTCTGCACTCA 	2
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGAT 	25
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGA 	13
-------------------------------------------------------------AATGTGTAGCAAAAGACAGG 	1
-------------------------------------------------------------AATGTGTAGCAAAAGACAG 	1
--------------------------------------------------------------ATGTGTAGCAAAAGACAGGAT 	1

Overlaps with: MNEST032197 MNEST032198
Overlaps with miRBase pre-miRNAs: mmu-mir-511
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Mus musculus	GSM539850	AATGTGTAGCAAAAGACAGGAT	CATGCCTTTTGCTCTGCACTCA	down	4	1

Secondary structure

AAGTAACCAAATAGATACCCACCATGCCTTTTGCTCTGCACTCAGTAAATAATAATTTGTGAATGTGTAGCAAAAGACAGGATGGGGATCCATTAAATCCCA
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGAT 	30
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGA 	18
-------------------------------------------------------------AATGTGTAGCAAAAGACAGG 	10
--------------------------------------------------------------ATGTGTAGCAAAAGACAGGA 	1

Overlaps with: MNEST032197 MNEST032198
Overlaps with miRBase pre-miRNAs: mmu-mir-511
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Mus musculus	GSM527276	AATGTGTAGCAAAAGACAGGAT	CATGCCTTTTGCTCTGCACTCA	down	4	1

Secondary structure

AAGTAACCAAATAGATACCCACCATGCCTTTTGCTCTGCACTCAGTAAATAATAATTTGTGAATGTGTAGCAAAAGACAGGATGGGGATCCATTAAATCCCA
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGAT 	8
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGA 	3
-------------------------------------------------------------AATGTGTAGCAAAAGACAGG 	1

Overlaps with: MNEST032197 MNEST032198
Overlaps with miRBase pre-miRNAs: mmu-mir-511
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Mus musculus	GSM539869	AATGTGTAGCAAAAGACAGGAT	CATGCCTTTTGCTCTGCACTCA	down	4	1

Secondary structure

AAGTAACCAAATAGATACCCACCATGCCTTTTGCTCTGCACTCAGTAAATAATAATTTGTGAATGTGTAGCAAAAGACAGGATGGGGATCCATTAAATCCCA
----------------------CATGCCTTTTGCTCTGCACTCA 	2
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGAT 	12
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGA 	8
-------------------------------------------------------------AATGTGTAGCAAAAGACAG 	1

Overlaps with: MNEST032197 MNEST032198
Overlaps with miRBase pre-miRNAs: mmu-mir-511
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Mus musculus	GSM539870	AATGTGTAGCAAAAGACAGGAT	CATGCCTTTTGCTCTGCACTCA	down	4	1

Secondary structure

AAGTAACCAAATAGATACCCACCATGCCTTTTGCTCTGCACTCAGTAAATAATAATTTGTGAATGTGTAGCAAAAGACAGGATGGGGATCCATTAAATCCCA
----------------------CATGCCTTTTGCTCTGCACTCA 	2
----------------------CATGCCTTTTGCTCTGCACTC 	1
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGATG 	2
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGAT 	51
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGA 	18
-------------------------------------------------------------AATGTGTAGCAAAAGACAGG 	1
-------------------------------------------------------------AATGTGTAGCAAAAGACAG 	1
--------------------------------------------------------------ATGTGTAGCAAAAGACAGGAT 	5
--------------------------------------------------------------ATGTGTAGCAAAAGACAGGA 	1

Overlaps with: MNEST032197 MNEST032198
Overlaps with miRBase pre-miRNAs: mmu-mir-511
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Mus musculus	GSM527277-2110	AATGTGTAGCAAAAGACAGGAT	CATGCCTTTTGCTCTGCACTCA	down	4	1

Secondary structure

AAGTAACCAAATAGATACCCACCATGCCTTTTGCTCTGCACTCAGTAAATAATAATTTGTGAATGTGTAGCAAAAGACAGGATGGGGATCCATTAAATCCCA
----------------------CATGCCTTTTGCTCTGCACTC 	1
-----------------------ATGCCTTTTGCTCTGCACTCAGT 	1
-------------------------------------------------------------AATGTGTAGCAAAAGACAG 	1
-------------------------------------------------------------AATGTGTAGCAAAAGACAGG 	4
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGA 	16
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGAT 	46

Overlaps with: MNEST032197 MNEST032198
Overlaps with miRBase pre-miRNAs: mmu-mir-511
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Mus musculus	GSM539848	AATGTGTAGCAAAAGACAGGAT	CATGCCTTTTGCTCTGCACTCA	down	4	1

Secondary structure

AAGTAACCAAATAGATACCCACCATGCCTTTTGCTCTGCACTCAGTAAATAATAATTTGTGAATGTGTAGCAAAAGACAGGATGGGGATCCATTAAATCCCA
----------------------CATGCCTTTTGCTCTGCAC 	1
----------------------CATGCCTTTTGCTCTGCACTCA 	12
-----------------------ATGCCTTTTGCTCTGCACTCAGT 	1
-----------------------ATGCCTTTTGCTCTGCACTCAG 	1
-----------------------ATGCCTTTTGCTCTGCACTCA 	1
---------------------------------------------------------TGTGAATGTGTAGCAAAAGACA 	2
---------------------------------------------------------TGTGAATGTGTAGCAAAAGAC 	1
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGATGG 	1
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGAT 	871
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGATG 	13
-------------------------------------------------------------AATGTGTAGCAAAAGACAG 	20
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGA 	232
-------------------------------------------------------------AATGTGTAGCAAAAGACAGG 	31
--------------------------------------------------------------ATGTGTAGCAAAAGACAGGA 	1
--------------------------------------------------------------ATGTGTAGCAAAAGACAGGAT 	27
----------------------------------------------------------------GTGTAGCAAAAGACAGGAT 	2

Overlaps with: MNEST032197 MNEST032198
Overlaps with miRBase pre-miRNAs: mmu-mir-511
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Mus musculus	GSM539872	AATGTGTAGCAAAAGACAGGAT	CATGCCTTTTGCTCTGCACTCA	down	4	1

Secondary structure

AAGTAACCAAATAGATACCCACCATGCCTTTTGCTCTGCACTCAGTAAATAATAATTTGTGAATGTGTAGCAAAAGACAGGATGGGGATCCATTAAATCCCA
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGAT 	18
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGA 	10
-------------------------------------------------------------AATGTGTAGCAAAAGACAGG 	6

Overlaps with: MNEST032197 MNEST032198
Overlaps with miRBase pre-miRNAs: mmu-mir-511
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Mus musculus	GSM539847	AATGTGTAGCAAAAGACAGGAT	CATGCCTTTTGCTCTGCACTCA	down	4	1

Secondary structure

AAGTAACCAAATAGATACCCACCATGCCTTTTGCTCTGCACTCAGTAAATAATAATTTGTGAATGTGTAGCAAAAGACAGGATGGGGATCCATTAAATCCCA
----------------------CATGCCTTTTGCTCTGCAC 	1
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGAT 	11
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGA 	1
-------------------------------------------------------------AATGTGTAGCAAAAGACAGG 	3

Overlaps with: MNEST032197 MNEST032198
Overlaps with miRBase pre-miRNAs: mmu-mir-511
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Mus musculus	GSM539853	AATGTGTAGCAAAAGACAGGAT	CATGCCTTTTGCTCTGCACTCA	down	4	1

Secondary structure

AAGTAACCAAATAGATACCCACCATGCCTTTTGCTCTGCACTCAGTAAATAATAATTTGTGAATGTGTAGCAAAAGACAGGATGGGGATCCATTAAATCCCA
----------------------CATGCCTTTTGCTCTGCACTCAG 	1
----------------------CATGCCTTTTGCTCTGCACTCA 	29
----------------------CATGCCTTTTGCTCTGCACTC 	7
-----------------------ATGCCTTTTGCTCTGCACTCAGT 	1
---------------------------------------------------------TGTGAATGTGTAGCAAAAGACA 	1
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGATG 	9
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGAT 	981
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGATGG 	9
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGA 	290
-------------------------------------------------------------AATGTGTAGCAAAAGACAGG 	47
-------------------------------------------------------------AATGTGTAGCAAAAGACAG 	30
--------------------------------------------------------------ATGTGTAGCAAAAGACAGGATGG 	1
--------------------------------------------------------------ATGTGTAGCAAAAGACAGGAT 	29
--------------------------------------------------------------ATGTGTAGCAAAAGACAGGA 	2
--------------------------------------------------------------ATGTGTAGCAAAAGACAGG 	1

Overlaps with: MNEST032197 MNEST032198
Overlaps with miRBase pre-miRNAs: mmu-mir-511
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Mus musculus	GSM539871	AATGTGTAGCAAAAGACAGGAT	CATGCCTTTTGCTCTGCACTCA	down	4	1

Secondary structure

AAGTAACCAAATAGATACCCACCATGCCTTTTGCTCTGCACTCAGTAAATAATAATTTGTGAATGTGTAGCAAAAGACAGGATGGGGATCCATTAAATCCCA
----------------------CATGCCTTTTGCTCTGCACTCA 	1
-----------------------ATGCCTTTTGCTCTGCACTCAGT 	1
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGATG 	1
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGAT 	69
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGA 	11
-------------------------------------------------------------AATGTGTAGCAAAAGACAGG 	5
-------------------------------------------------------------AATGTGTAGCAAAAGACAG 	6
--------------------------------------------------------------ATGTGTAGCAAAAGACAGGAT 	3

Overlaps with: MNEST032197 MNEST032198
Overlaps with miRBase pre-miRNAs: mmu-mir-511
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
14	Mus musculus	GSM539878	AATGTGTAGCAAAAGACAGGAT	CATGCCTTTTGCTCTGCACTCA	down	4	1

Secondary structure

AAGTAACCAAATAGATACCCACCATGCCTTTTGCTCTGCACTCAGTAAATAATAATTTGTGAATGTGTAGCAAAAGACAGGATGGGGATCCATTAAATCCCA
----------------------CATGCCTTTTGCTCTGCACTCA 	1
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGATG 	2
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGAT 	41
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGA 	19
-------------------------------------------------------------AATGTGTAGCAAAAGACAG 	4
--------------------------------------------------------------ATGTGTAGCAAAAGACAGGAT 	2

Overlaps with: MNEST032197 MNEST032198
Overlaps with miRBase pre-miRNAs: mmu-mir-511
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
15	Mus musculus	GSM539873	AATGTGTAGCAAAAGACAGGAT	CATGCCTTTTGCTCTGCACTCA	down	4	1

Secondary structure

AAGTAACCAAATAGATACCCACCATGCCTTTTGCTCTGCACTCAGTAAATAATAATTTGTGAATGTGTAGCAAAAGACAGGATGGGGATCCATTAAATCCCA
----------------------CATGCCTTTTGCTCTGCACTCA 	2
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGAT 	21
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGA 	11
-------------------------------------------------------------AATGTGTAGCAAAAGACAGG 	2
-------------------------------------------------------------AATGTGTAGCAAAAGACAG 	2

Overlaps with: MNEST032197 MNEST032198
Overlaps with miRBase pre-miRNAs: mmu-mir-511
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
16	Mus musculus	GSM539854	AATGTGTAGCAAAAGACAGGAT	CATGCCTTTTGCTCTGCACTCA	down	4	1

Secondary structure

AAGTAACCAAATAGATACCCACCATGCCTTTTGCTCTGCACTCAGTAAATAATAATTTGTGAATGTGTAGCAAAAGACAGGATGGGGATCCATTAAATCCCA
----------------------CATGCCTTTTGCTCTGCACTCA 	25
----------------------CATGCCTTTTGCTCTGCACTC 	1
----------------------CATGCCTTTTGCTCTGCAC 	2
---------------------------------------------------------TGTGAATGTGTAGCAAAAGACA 	2
---------------------------------------------------------TGTGAATGTGTAGCAAAAGAC 	1
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGATGG 	2
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGATG 	5
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGAT 	734
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGA 	176
-------------------------------------------------------------AATGTGTAGCAAAAGACAGG 	29
-------------------------------------------------------------AATGTGTAGCAAAAGACAG 	32
--------------------------------------------------------------ATGTGTAGCAAAAGACAGGAT 	25
--------------------------------------------------------------ATGTGTAGCAAAAGACAGGA 	2
---------------------------------------------------------------TGTGTAGCAAAAGACAGGAT 	1

Overlaps with: MNEST032197 MNEST032198
Overlaps with miRBase pre-miRNAs: mmu-mir-511
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
17	Mus musculus	GSM527279-2112	AATGTGTAGCAAAAGACAGGAT	CATGCCTTTTGCTCTGCACTCA	down	4	1

Secondary structure

AAGTAACCAAATAGATACCCACCATGCCTTTTGCTCTGCACTCAGTAAATAATAATTTGTGAATGTGTAGCAAAAGACAGGATGGGGATCCATTAAATCCCA
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGA 	9
-------------------------------------------------------------AATGTGTAGCAAAAGACAG 	1
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGAT 	23
-------------------------------------------------------------AATGTGTAGCAAAAGACAGG 	1

Overlaps with: MNEST032197 MNEST032198
Overlaps with miRBase pre-miRNAs: mmu-mir-511
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
18	Mus musculus	GSM539874	AATGTGTAGCAAAAGACAGGAT	CATGCCTTTTGCTCTGCACTCA	down	4	1

Secondary structure

AAGTAACCAAATAGATACCCACCATGCCTTTTGCTCTGCACTCAGTAAATAATAATTTGTGAATGTGTAGCAAAAGACAGGATGGGGATCCATTAAATCCCA
----------------------CATGCCTTTTGCTCTGCACTCA 	5
-----------------------ATGCCTTTTGCTCTGCACTCA 	1
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGATG 	1
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGAT 	155
-------------------------------------------------------------AATGTGTAGCAAAAGACAG 	13
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGA 	86
-------------------------------------------------------------AATGTGTAGCAAAAGACAGGATGG 	1
-------------------------------------------------------------AATGTGTAGCAAAAGACAGG 	27
--------------------------------------------------------------ATGTGTAGCAAAAGACAGGAT 	10
--------------------------------------------------------------ATGTGTAGCAAAAGACAGGA 	1

Overlaps with: MNEST032197 MNEST032198
Overlaps with miRBase pre-miRNAs: mmu-mir-511
HuntMi prediction: true miRNA