miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AATTCACAGGCCCTATCTTGTG

selected species: Oryza sativa



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Oryza sativa GSM520638-18676 AATTCACAGGCCCTATCTTGTG AAAGATAATGCTGTGAATTTG up 3 1


Secondary structure

AATAAGTTAGTGCGCTTTGCGAATTCACAGGCCCTATCTTGTGGTATGAACTGAGTACGCGATGATTTATGGCGCATATTGGGGGCTTACCAAAAGATAATGCTGTGAATTTGCAAAGCGCTCAAACCCAC
---------------------AATTCACAGGCCCTATCTTGTG 	46
----------------------------------TATCTTGTGGTATGAACTGAG 	3
-------------------------------------------------------------------------------------------AAAAGATAATGCTGTGAATTT 	1

Overlaps with: MNEST042211 MNEST049114
Overlaps with miRBase pre-miRNAs: osa-MIR1428g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Oryza sativa GSM520638-18676 AATTCACAGGCCCTATCTTGTG TAAGATAATGTCGTGAATTCG up 2 1


Secondary structure

TGTAAACTTCAATAGGTTAGTGCGCTTGGCAAATTCACAGGCCCTATCTTGTGGTATGAACTGAGAACGCGATGATTTATGGTGCGTATTGGGGGCCGGCTTACCATAAGATAATGTCGTGAATTCGCCAAGCATTCAAACCCACTGAAGTGTTG
-------------------------------AATTCACAGGCCCTATCTTGTG 	46
--------------------------------------------TATCTTGTGGTATGAACTGAG 	3


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Oryza sativa GSM520638-18676 AATTCACAGGCCCTATCTTGTG TAAGATAATGCCGTGAATTCG up 2 1


Secondary structure

GGTAAGTTTCAATAGGTTAGTGTGCTTTGCGAATTCACAGGCCCTATCTTGTGGTATGAACTAAGTACGCGATGATTTCTGGTACGTATTGGGGGCTTACCATAAGATAATGCCGTGAATTCGTAAAGCGTTCAAACCCACCGAAGTGTTG
-------------------------------AATTCACAGGCCCTATCTTGTG 	46
----------------------------------------------------------------GTACGCGATGATTTCTGGTAC 	1
------------------------------------------------------------------------------CTGGTACGTATTGGGGGCT 	1
------------------------------------------------------------------------------------------------------TAAGATAATGCCGTGAATT 	1

Overlaps with: MNEST042210 MNEST049113
Overlaps with miRBase pre-miRNAs: osa-MIR1428f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Oryza sativa GSM520640-18679 AATTCACAGGCCCTATCTTGTG AAAGATAATGCTGTGAATTTG up 3 1


Secondary structure

AATAAGTTAGTGCGCTTTGCGAATTCACAGGCCCTATCTTGTGGTATGAACTGAGTACGCGATGATTTATGGCGCATATTGGGGGCTTACCAAAAGATAATGCTGTGAATTTGCAAAGCGCTCAAACCCAC
-------------------CGAATTCACAGGCCCTATCTTG 	1
---------------------AATTCACAGGCCCTATCTTGTG 	58
----------------------------AGGCCCTATCTTGTGGTATGAA 	3
----------------------------AGGCCCTATCTTGTGGTATGAACT 	1
----------------------------------TATCTTGTGGTATGAACTGAG 	33

Overlaps with: MNEST042211 MNEST049114
Overlaps with miRBase pre-miRNAs: osa-MIR1428g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Oryza sativa GSM520640-18679 AATTCACAGGCCCTATCTTGTG TAAGATAATGTCGTGAATTCG up 2 1


Secondary structure

TGTAAACTTCAATAGGTTAGTGCGCTTGGCAAATTCACAGGCCCTATCTTGTGGTATGAACTGAGAACGCGATGATTTATGGTGCGTATTGGGGGCCGGCTTACCATAAGATAATGTCGTGAATTCGCCAAGCATTCAAACCCACTGAAGTGTTG
-------------------------------AATTCACAGGCCCTATCTTGTG 	58
--------------------------------------AGGCCCTATCTTGTGGTATGAA 	3
--------------------------------------AGGCCCTATCTTGTGGTATGAACT 	1
--------------------------------------------TATCTTGTGGTATGAACTGAG 	33
--------------------------------------------TATCTTGTGGTATGAACTGAGA 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Oryza sativa GSM520640-18679 AATTCACAGGCCCTATCTTGTG TAAGATAATGCCGTGAATTCG up 2 1


Secondary structure

GGTAAGTTTCAATAGGTTAGTGTGCTTTGCGAATTCACAGGCCCTATCTTGTGGTATGAACTAAGTACGCGATGATTTCTGGTACGTATTGGGGGCTTACCATAAGATAATGCCGTGAATTCGTAAAGCGTTCAAACCCACCGAAGTGTTG
-----------------------------CGAATTCACAGGCCCTATCTTG 	1
-------------------------------AATTCACAGGCCCTATCTTGTG 	58
--------------------------------------AGGCCCTATCTTGTGGTATGAA 	3
--------------------------------------AGGCCCTATCTTGTGGTATGAACT 	1

Overlaps with: MNEST042210 MNEST049113
Overlaps with miRBase pre-miRNAs: osa-MIR1428f
HuntMi prediction: true miRNA