miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AATTTGAAGCATGATGTCAAG

selected species: Physcomitrella patens



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM313212 AATTTGAAGCATGATGTCAAG TGGTATCATGTTGCAAATGGC down 2 0


Secondary structure

AGTTCCTGTTTCTGGTTGATCTTGGTATCATGTTGCAAATGGCAAAACCTGTGACCGGAATGGTACTCAGTTTTTGAAATTTGAAGCATGATGTCAAGTACAACGGAAGTTGGACGG
---------------TTGATCTTGGTATCATGTTGC 	2
----------------------TGGTATCATGTTGCAAATGGCAAA 	5
----------------------TGGTATCATGTTGCAAATGGC 	39
----------------------TGGTATCATGTTGCAAATGG 	4
----------------------TGGTATCATGTTGCAAATGGCA 	3
------------------------------------------------CTGTGACCGGAATGGTACTCAGT 	1
------------------------------------------------CTGTGACCGGAATGGTACTCAGTT 	7
-------------------------------------------------TGTGACCGGAATGGTACTCAGTT 	1
-------------------------------------------------TGTGACCGGAATGGTACTCAGT 	1
-------------------------------------------------TGTGACCGGAATGGTACTCAG 	1
-----------------------------------------------------------------------TTTTGAAATTTGAAGCATGAT 	1
------------------------------------------------------------------------TTTGAAATTTGAAGCATGATG 	1
-------------------------------------------------------------------------TTGAAATTTGAAGCATGATGTCAA 	1
--------------------------------------------------------------------------TGAAATTTGAAGCATGATGTCAAG 	5
----------------------------------------------------------------------------AAATTTGAAGCATGATGTCAAG 	2
-----------------------------------------------------------------------------AATTTGAAGCATGATGTCAAG 	913
-----------------------------------------------------------------------------AATTTGAAGCATGATGTCA 	2
-----------------------------------------------------------------------------AATTTGAAGCATGATGTCAAGT 	15
-----------------------------------------------------------------------------AATTTGAAGCATGATGTCAA 	21
------------------------------------------------------------------------------ATTTGAAGCATGATGTCAAG 	5
-------------------------------------------------------------------------------TTTGAAGCATGATGTCAAG 	1
--------------------------------------------------------------------------------TTGAAGCATGATGTCAAGTAC 	6


Overlaps with: MNEST039690 MNEST039691
Overlaps with miRBase pre-miRNAs: ppt-MIR1217
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM313213 AATTTGAAGCATGATGTCAAG TGGTATCATGTTGCAAATGGC down 2 0


Secondary structure

AGTTCCTGTTTCTGGTTGATCTTGGTATCATGTTGCAAATGGCAAAACCTGTGACCGGAATGGTACTCAGTTTTTGAAATTTGAAGCATGATGTCAAGTACAACGGAAGTTGGACGG
---------------TTGATCTTGGTATCATGTTGC 	2
-------------------TCTTGGTATCATGTTGCAAAT 	1
----------------------TGGTATCATGTTGCAAATGGCAAA 	5
----------------------TGGTATCATGTTGCAAATGGC 	24
----------------------TGGTATCATGTTGCAAATGG 	4
----------------------TGGTATCATGTTGCAAATGGCA 	4
---------------------------TCATGTTGCAAATGGCAAAAC 	2
----------------------------------------------ACCTGTGACCGGAATGGTACTCAGTT 	2
------------------------------------------------CTGTGACCGGAATGGTACTCAGT 	3
------------------------------------------------CTGTGACCGGAATGGTACTCAGTT 	1
-------------------------------------------------TGTGACCGGAATGGTACTCAGTT 	1
-------------------------------------------------TGTGACCGGAATGGTACTCAGT 	1
---------------------------------------------------------------------GTTTTTGAAATTTGAAGCATGATG 	1
------------------------------------------------------------------------TTTGAAATTTGAAGCATGAT 	1
------------------------------------------------------------------------TTTGAAATTTGAAGCATGATG 	2
--------------------------------------------------------------------------TGAAATTTGAAGCATGATGTCAAG 	3
---------------------------------------------------------------------------GAAATTTGAAGCATGATGTCAAG 	1
----------------------------------------------------------------------------AAATTTGAAGCATGATGTCAAG 	2
-----------------------------------------------------------------------------AATTTGAAGCATGATGTCA 	2
-----------------------------------------------------------------------------AATTTGAAGCATGATGTCAA 	11
-----------------------------------------------------------------------------AATTTGAAGCATGATGTCAAG 	987
-----------------------------------------------------------------------------AATTTGAAGCATGATGTCAAGT 	12
------------------------------------------------------------------------------ATTTGAAGCATGATGTCAA 	1
------------------------------------------------------------------------------ATTTGAAGCATGATGTCAAG 	17
-------------------------------------------------------------------------------TTTGAAGCATGATGTCAAG 	1
--------------------------------------------------------------------------------TTGAAGCATGATGTCAAGTAC 	1


Overlaps with: MNEST039690 MNEST039691
Overlaps with miRBase pre-miRNAs: ppt-MIR1217
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM313215 AATTTGAAGCATGATGTCAAG TGGTATCATGTTGCAAATGGC down 2 0


Secondary structure

AGTTCCTGTTTCTGGTTGATCTTGGTATCATGTTGCAAATGGCAAAACCTGTGACCGGAATGGTACTCAGTTTTTGAAATTTGAAGCATGATGTCAAGTACAACGGAAGTTGGACGG
-------------------TCTTGGTATCATGTTGCAAAT 	3
----------------------TGGTATCATGTTGCAAATGGC 	21
----------------------TGGTATCATGTTGCAAATGG 	1
----------------------TGGTATCATGTTGCAAATGGCA 	1
---------------------------TCATGTTGCAAATGGCAAAAC 	2
----------------------------CATGTTGCAAATGGCAAAACC 	1
------------------------------------------------CTGTGACCGGAATGGTACTCAGT 	1
------------------------------------------------CTGTGACCGGAATGGTACTCAGTT 	4
-----------------------------------------------------------------------TTTTGAAATTTGAAGCATGAT 	1
------------------------------------------------------------------------TTTGAAATTTGAAGCATGATG 	1
----------------------------------------------------------------------------AAATTTGAAGCATGATGTCAAG 	2
-----------------------------------------------------------------------------AATTTGAAGCATGATGTCAAG 	394
-----------------------------------------------------------------------------AATTTGAAGCATGATGTCAAGT 	4
-----------------------------------------------------------------------------AATTTGAAGCATGATGTCAA 	5
------------------------------------------------------------------------------ATTTGAAGCATGATGTCAAG 	4
-------------------------------------------------------------------------------TTTGAAGCATGATGTCAAG 	1
--------------------------------------------------------------------------------TTGAAGCATGATGTCAAGTAC 	4


Overlaps with: MNEST039690 MNEST039691
Overlaps with miRBase pre-miRNAs: ppt-MIR1217
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Physcomitrella patens GSM313214 AATTTGAAGCATGATGTCAAG TGGTATCATGTTGCAAATGGC down 2 0


Secondary structure

AGTTCCTGTTTCTGGTTGATCTTGGTATCATGTTGCAAATGGCAAAACCTGTGACCGGAATGGTACTCAGTTTTTGAAATTTGAAGCATGATGTCAAGTACAACGGAAGTTGGACGG
------------------ATCTTGGTATCATGTTGCAA 	1
-------------------TCTTGGTATCATGTTGCAAAT 	6
---------------------TTGGTATCATGTTGCAAATGG 	1
----------------------TGGTATCATGTTGCAAATGG 	5
----------------------TGGTATCATGTTGCAAATG 	1
----------------------TGGTATCATGTTGCAAATGGC 	18
----------------------TGGTATCATGTTGCAAATGGCA 	4
---------------------------TCATGTTGCAAATGGCAAAAC 	2
----------------------------CATGTTGCAAATGGCAAAACC 	3
------------------------------------------------CTGTGACCGGAATGGTACTCAGTT 	11
------------------------------------------------CTGTGACCGGAATGGTACTCAGT 	2
-------------------------------------------------TGTGACCGGAATGGTACTCAGT 	3
-------------------------------------------------TGTGACCGGAATGGTACTCAG 	1
-------------------------------------------------TGTGACCGGAATGGTACTCA 	1
-----------------------------------------------------ACCGGAATGGTACTCAGTTTTTGA 	1
-----------------------------------------------------------------------TTTTGAAATTTGAAGCATGAT 	3
------------------------------------------------------------------------TTTGAAATTTGAAGCATGATG 	4
----------------------------------------------------------------------------AAATTTGAAGCATGATGTCAAG 	1
-----------------------------------------------------------------------------AATTTGAAGCATGATGTCAAGT 	4
-----------------------------------------------------------------------------AATTTGAAGCATGATGTCAAG 	302
-----------------------------------------------------------------------------AATTTGAAGCATGATGTCA 	1
-----------------------------------------------------------------------------AATTTGAAGCATGATGTCAA 	6
------------------------------------------------------------------------------ATTTGAAGCATGATGTCAAG 	6
-------------------------------------------------------------------------------TTTGAAGCATGATGTCAAG 	1
--------------------------------------------------------------------------------TTGAAGCATGATGTCAAGTAC 	4
----------------------------------------------------------------------------------GAAGCATGATGTCAAGTACA 	1


Overlaps with: MNEST039690 MNEST039691
Overlaps with miRBase pre-miRNAs: ppt-MIR1217
HuntMi prediction: true miRNA