miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: ACACTCTCTCCATTTCTCTAC

selected species: Physcomitrella patens

3 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Physcomitrella patens	GSM313216	ACACTCTCTCCATTTCTCTAC	AGAGAATTGGAGAGAGTGCAT	up	3	0

Secondary structure

GAGCGATTGGACCACCTTGCAGTTTCATGGCACACTCTCTCCATTTCTCTACCGTTCATGCAGCGGTTGATCGATTGGGTTGCTGGTTGATTGATCGATCGATGGTCAGGAGTTGGAAGAGAATTGGAGAGAGTGCATTGTGAATTGCGGGGTTGACGAGGCGGAG
------------------------------CACACTCTCTCCATTTCTCTAC 	1
-------------------------------ACACTCTCTCCATTTCTCTA 	29
-------------------------------ACACTCTCTCCATTTCTCTACC 	93
-------------------------------ACACTCTCTCCATTTCTCTAC 	1873
-------------------------------ACACTCTCTCCATTTCTCT 	8
-------------------------------ACACTCTCTCCATTTCTCTACCGT 	1
--------------------------------CACTCTCTCCATTTCTCTAC 	7
---------------------------------ACTCTCTCCATTTCTCTAC 	4
-------------------------------------------------------------------------------------------------------------GAGTTGGAAGAGAATTGGA 	1
------------------------------------------------------------------------------------------------------------------GGAAGAGAATTGGAGAGAGTGCAT 	1
-------------------------------------------------------------------------------------------------------------------GAAGAGAATTGGAGAGAGTGC 	1
--------------------------------------------------------------------------------------------------------------------AAGAGAATTGGAGAGAGTGCAT 	10
--------------------------------------------------------------------------------------------------------------------AAGAGAATTGGAGAGAGTGC 	3
--------------------------------------------------------------------------------------------------------------------AAGAGAATTGGAGAGAGTGCA 	10
---------------------------------------------------------------------------------------------------------------------AGAGAATTGGAGAGAGTGCA 	395
---------------------------------------------------------------------------------------------------------------------AGAGAATTGGAGAGAGTGC 	108
---------------------------------------------------------------------------------------------------------------------AGAGAATTGGAGAGAGTGCAT 	998
---------------------------------------------------------------------------------------------------------------------AGAGAATTGGAGAGAGTGCATT 	35
----------------------------------------------------------------------------------------------------------------------GAGAATTGGAGAGAGTGCA 	17
----------------------------------------------------------------------------------------------------------------------GAGAATTGGAGAGAGTGCATT 	5
----------------------------------------------------------------------------------------------------------------------GAGAATTGGAGAGAGTGCAT 	14
-----------------------------------------------------------------------------------------------------------------------AGAATTGGAGAGAGTGCAT 	6
------------------------------------------------------------------------------------------------------------------------GAATTGGAGAGAGTGCATTG 	1
---------------------------------------------------------------------------------------------------------------------------TTGGAGAGAGTGCATTGTGAA 	1
---------------------------------------------------------------------------------------------------------------------------TTGGAGAGAGTGCATTGTGAAT 	1
-------------------------------------------------------------------------------------------------------------------------------AGAGAGTGCATTGTGAATTGC 	1

Overlaps with: MNEST006986
Overlaps with miRBase pre-miRNAs: ppt-MIR1023a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Physcomitrella patens	GSM313214	ACACTCTCTCCATTTCTCTAC	AGAGAATTGGAGAGAGTGCAT	up	3	0

Secondary structure

GAGCGATTGGACCACCTTGCAGTTTCATGGCACACTCTCTCCATTTCTCTACCGTTCATGCAGCGGTTGATCGATTGGGTTGCTGGTTGATTGATCGATCGATGGTCAGGAGTTGGAAGAGAATTGGAGAGAGTGCATTGTGAATTGCGGGGTTGACGAGGCGGAG
------------------------------CACACTCTCTCCATTTCTCTAC 	2
-------------------------------ACACTCTCTCCATTTCTCTACC 	86
-------------------------------ACACTCTCTCCATTTCTCTAC 	3655
-------------------------------ACACTCTCTCCATTTCTCTA 	24
-------------------------------ACACTCTCTCCATTTCTCTACCGTT 	1
-------------------------------ACACTCTCTCCATTTCTCT 	3
--------------------------------CACTCTCTCCATTTCTCTA 	1
--------------------------------CACTCTCTCCATTTCTCTAC 	18
---------------------------------ACTCTCTCCATTTCTCTAC 	5
-------------------------------------------------------------------------------------GTTGATTGATCGATCGATGG 	1
-------------------------------------------------------------------------------------------------------------------GAAGAGAATTGGAGAGAGTGC 	1
--------------------------------------------------------------------------------------------------------------------AAGAGAATTGGAGAGAGTGCAT 	12
--------------------------------------------------------------------------------------------------------------------AAGAGAATTGGAGAGAGTGCA 	16
--------------------------------------------------------------------------------------------------------------------AAGAGAATTGGAGAGAGTGCATT 	1
--------------------------------------------------------------------------------------------------------------------AAGAGAATTGGAGAGAGTG 	1
---------------------------------------------------------------------------------------------------------------------AGAGAATTGGAGAGAGTGC 	40
---------------------------------------------------------------------------------------------------------------------AGAGAATTGGAGAGAGTGCA 	1058
---------------------------------------------------------------------------------------------------------------------AGAGAATTGGAGAGAGTGCATT 	41
---------------------------------------------------------------------------------------------------------------------AGAGAATTGGAGAGAGTGCAT 	2065
----------------------------------------------------------------------------------------------------------------------GAGAATTGGAGAGAGTGCA 	27
----------------------------------------------------------------------------------------------------------------------GAGAATTGGAGAGAGTGCAT 	37
-----------------------------------------------------------------------------------------------------------------------AGAATTGGAGAGAGTGCATT 	1
-----------------------------------------------------------------------------------------------------------------------AGAATTGGAGAGAGTGCAT 	7
------------------------------------------------------------------------------------------------------------------------GAATTGGAGAGAGTGCATT 	1
--------------------------------------------------------------------------------------------------------------------------ATTGGAGAGAGTGCATTGTGAA 	1

Overlaps with: MNEST006986
Overlaps with miRBase pre-miRNAs: ppt-MIR1023a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Physcomitrella patens	GSM313217	ACACTCTCTCCATTTCTCTAC	AGAGAATTGGAGAGAGTGCAT	up	3	0

Secondary structure

GAGCGATTGGACCACCTTGCAGTTTCATGGCACACTCTCTCCATTTCTCTACCGTTCATGCAGCGGTTGATCGATTGGGTTGCTGGTTGATTGATCGATCGATGGTCAGGAGTTGGAAGAGAATTGGAGAGAGTGCATTGTGAATTGCGGGGTTGACGAGGCGGAG
------------------------------CACACTCTCTCCATTTCTCTAC 	1
-------------------------------ACACTCTCTCCATTTCTCTA 	38
-------------------------------ACACTCTCTCCATTTCTCTACC 	92
-------------------------------ACACTCTCTCCATTTCTCTAC 	1772
-------------------------------ACACTCTCTCCATTTCTCTACCGT 	1
-------------------------------ACACTCTCTCCATTTCTCT 	9
--------------------------------CACTCTCTCCATTTCTCTA 	1
--------------------------------CACTCTCTCCATTTCTCTAC 	10
---------------------------------ACTCTCTCCATTTCTCTAC 	4
-------------------------------------------------------------------------------------------TGATCGATCGATGGTCAGGAGTTG 	1
-----------------------------------------------------------------------------------------------------------------TGGAAGAGAATTGGAGAGA 	1
------------------------------------------------------------------------------------------------------------------GGAAGAGAATTGGAGAGAGTGCA 	1
-------------------------------------------------------------------------------------------------------------------GAAGAGAATTGGAGAGAGTGCAT 	2
-------------------------------------------------------------------------------------------------------------------GAAGAGAATTGGAGAGAGTGCA 	1
-------------------------------------------------------------------------------------------------------------------GAAGAGAATTGGAGAGAGTGC 	1
--------------------------------------------------------------------------------------------------------------------AAGAGAATTGGAGAGAGTGCAT 	7
--------------------------------------------------------------------------------------------------------------------AAGAGAATTGGAGAGAGTG 	1
--------------------------------------------------------------------------------------------------------------------AAGAGAATTGGAGAGAGTGCA 	6
--------------------------------------------------------------------------------------------------------------------AAGAGAATTGGAGAGAGTGC 	1
---------------------------------------------------------------------------------------------------------------------AGAGAATTGGAGAGAGTGCA 	410
---------------------------------------------------------------------------------------------------------------------AGAGAATTGGAGAGAGTGC 	135
---------------------------------------------------------------------------------------------------------------------AGAGAATTGGAGAGAGTGCATT 	41
---------------------------------------------------------------------------------------------------------------------AGAGAATTGGAGAGAGTGCAT 	923
----------------------------------------------------------------------------------------------------------------------GAGAATTGGAGAGAGTGCA 	19
----------------------------------------------------------------------------------------------------------------------GAGAATTGGAGAGAGTGCATT 	1
----------------------------------------------------------------------------------------------------------------------GAGAATTGGAGAGAGTGCAT 	16
-----------------------------------------------------------------------------------------------------------------------AGAATTGGAGAGAGTGCAT 	7
--------------------------------------------------------------------------------------------------------------------------------GAGAGTGCATTGTGAATTGC 	1

Overlaps with: MNEST006986
Overlaps with miRBase pre-miRNAs: ppt-MIR1023a
HuntMi prediction: true miRNA