miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: ACACTCTCTCCATTTCTCTGC

selected species: Physcomitrella patens



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM313216 ACACTCTCTCCATTTCTCTGC AGAGAATTGAAGAGAGTGCAT up 4 0


Secondary structure

GCCAGCTTGCAATTTCATGACACACTCTCTCCATTTCTCTGCCTGTCATGACTTGGTTGATCGATGGAGCGGTGGTTTTCATTGCCCGATTGAGGATCAGGAGTTGGGGAGAGAATTGAAGAGAGTGCATTGTGAATTGCAAGCTCCT
---------------------ACACTCTCTCCATTTCTCTG 	1
---------------------ACACTCTCTCCATTTCTCT 	8
---------------------ACACTCTCTCCATTTCTCTGCC 	9
---------------------ACACTCTCTCCATTTCTCTGC 	390
----------------------CACTCTCTCCATTTCTCTGC 	4
------------------------------------------------------------------------------------------------------------GAGAGAATTGAAGAGAGTGCAT 	1
-------------------------------------------------------------------------------------------------------------AGAGAATTGAAGAGAGTGCA 	45
-------------------------------------------------------------------------------------------------------------AGAGAATTGAAGAGAGTGC 	13
-------------------------------------------------------------------------------------------------------------AGAGAATTGAAGAGAGTGCATT 	4
-------------------------------------------------------------------------------------------------------------AGAGAATTGAAGAGAGTGCAT 	93
--------------------------------------------------------------------------------------------------------------GAGAATTGAAGAGAGTGCA 	2
-----------------------------------------------------------------------------------------------------------------------AGAGAGTGCATTGTGAATTGC 	1


Overlaps with: MNEST055504
Overlaps with miRBase pre-miRNAs: ppt-MIR1023b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM313214 ACACTCTCTCCATTTCTCTGC AGAGAATTGAAGAGAGTGCAT up 4 0


Secondary structure

GCCAGCTTGCAATTTCATGACACACTCTCTCCATTTCTCTGCCTGTCATGACTTGGTTGATCGATGGAGCGGTGGTTTTCATTGCCCGATTGAGGATCAGGAGTTGGGGAGAGAATTGAAGAGAGTGCATTGTGAATTGCAAGCTCCT
---------------------ACACTCTCTCCATTTCTCTG 	1
---------------------ACACTCTCTCCATTTCTCTGCC 	14
---------------------ACACTCTCTCCATTTCTCTGC 	264
---------------------ACACTCTCTCCATTTCTCT 	3
----------------------CACTCTCTCCATTTCTCTGC 	3
------------------------------------------------------------------------------------------------------------GAGAGAATTGAAGAGAGTGCA 	1
-------------------------------------------------------------------------------------------------------------AGAGAATTGAAGAGAGTGCA 	86
-------------------------------------------------------------------------------------------------------------AGAGAATTGAAGAGAGTGCATT 	3
-------------------------------------------------------------------------------------------------------------AGAGAATTGAAGAGAGTGC 	1
-------------------------------------------------------------------------------------------------------------AGAGAATTGAAGAGAGTGCAT 	177
--------------------------------------------------------------------------------------------------------------GAGAATTGAAGAGAGTGCAT 	2


Overlaps with: MNEST055504
Overlaps with miRBase pre-miRNAs: ppt-MIR1023b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM313217 ACACTCTCTCCATTTCTCTGC AGAGAATTGAAGAGAGTGCAT up 4 0


Secondary structure

GCCAGCTTGCAATTTCATGACACACTCTCTCCATTTCTCTGCCTGTCATGACTTGGTTGATCGATGGAGCGGTGGTTTTCATTGCCCGATTGAGGATCAGGAGTTGGGGAGAGAATTGAAGAGAGTGCATTGTGAATTGCAAGCTCCT
---------------------ACACTCTCTCCATTTCTCTG 	3
---------------------ACACTCTCTCCATTTCTCTGCC 	7
---------------------ACACTCTCTCCATTTCTCTGC 	321
---------------------ACACTCTCTCCATTTCTCT 	9
----------------------CACTCTCTCCATTTCTCTGC 	2
------------------------CTCTCTCCATTTCTCTGCC 	1
------------------------------------------------------------------------------------------------------------GAGAGAATTGAAGAGAGTGCAT 	1
-------------------------------------------------------------------------------------------------------------AGAGAATTGAAGAGAGTGCA 	43
-------------------------------------------------------------------------------------------------------------AGAGAATTGAAGAGAGTGCATT 	3
-------------------------------------------------------------------------------------------------------------AGAGAATTGAAGAGAGTGC 	7
-------------------------------------------------------------------------------------------------------------AGAGAATTGAAGAGAGTGCAT 	89
--------------------------------------------------------------------------------------------------------------GAGAATTGAAGAGAGTGCA 	1
--------------------------------------------------------------------------------------------------------------GAGAATTGAAGAGAGTGCAT 	1
------------------------------------------------------------------------------------------------------------------------GAGAGTGCATTGTGAATTGC 	1


Overlaps with: MNEST055504
Overlaps with miRBase pre-miRNAs: ppt-MIR1023b
HuntMi prediction: true miRNA