miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions




selected mature miRNA sequence: ACAGCAGGCACAGACAGGCAG

selected species: Mus musculus



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM539868 ACAGCAGGCACAGACAGGCAG GCCTGTCTACACTTGCTGTGC down 3 0


Secondary structure

TGGACAGAGTTGTCATGTGTCTGCCTGTCTACACTTGCTGTGCAGAACATCCGCTCACCTGTACAGCAGGCACAGACAGGCAGTCACATGACAACCCAGCCT
------------------------------------------------------------GTACAGCAGGCACAGACAGGCAG 	1
-------------------------------------------------------------TACAGCAGGCACAGACAGGCAG 	1
-------------------------------------------------------------TACAGCAGGCACAGACAGG 	3
--------------------------------------------------------------ACAGCAGGCACAGACAGGCAGT 	2
--------------------------------------------------------------ACAGCAGGCACAGACAGGCAG 	5

Overlaps with: MNEST027097 MNEST005029 MNEST005688 MNEST008275 MNEST029245 MNEST029246 MNEST033026 MNEST005773 MNEST032804 MNEST005163 MNEST027519 MNEST027625 MNEST027809 MNEST028236 MNEST028330 MNEST028531 MNEST030118 MNEST030289 MNEST030907 MNEST031941
Overlaps with miRBase pre-miRNAs: sla-mir-214 cgr-mir-214 eca-mir-214 ggo-mir-214 mne-mir-214 ptr-mir-214 hsa-mir-3120 mmu-mir-214 bta-mir-3120 rno-mir-214 rno-mir-3120 ppa-mir-214 ppy-mir-214 mml-mir-214 age-mir-214 hsa-mir-214
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM539870 ACAGCAGGCACAGACAGGCAGT TGCCTGTCTACACTTGCTGTGC down 4 0


Secondary structure

CTGGACAGAGTTGTCATGTGTCTGCCTGTCTACACTTGCTGTGCAGAACATCCGCTCACCTGTACAGCAGGCACAGACAGGCAGTCACATGACAACCCAGCCTG
----------------------TGCCTGTCTACACTTGCTGTGC 	1
----------------------TGCCTGTCTACACTTGCTGTG 	1
-------------------------------------------------------------GTACAGCAGGCACAGACAGGCAG 	1
--------------------------------------------------------------TACAGCAGGCACAGACAGGCAGTC 	1
--------------------------------------------------------------TACAGCAGGCACAGACAGGCAGT 	1
--------------------------------------------------------------TACAGCAGGCACAGACAGGCAG 	3
--------------------------------------------------------------TACAGCAGGCACAGACAGGCA 	3
--------------------------------------------------------------TACAGCAGGCACAGACAGG 	14
---------------------------------------------------------------ACAGCAGGCACAGACAGGCAGTC 	2
---------------------------------------------------------------ACAGCAGGCACAGACAGGCAGT 	39
---------------------------------------------------------------ACAGCAGGCACAGACAGGCAG 	14
---------------------------------------------------------------ACAGCAGGCACAGACAGGCA 	8
----------------------------------------------------------------CAGCAGGCACAGACAGGCAG 	1

Overlaps with: MNEST027097 MNEST005029 MNEST005688 MNEST008275 MNEST029245 MNEST029246 MNEST005773 MNEST005163
Overlaps with miRBase pre-miRNAs: cgr-mir-214 eca-mir-214 hsa-mir-3120 bta-mir-3120
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM539853 ACAGCAGGCACAGACAGGCAG GCCTGTCTACACTTGCTGTGC down 3 0


Secondary structure

TGGACAGAGTTGTCATGTGTCTGCCTGTCTACACTTGCTGTGCAGAACATCCGCTCACCTGTACAGCAGGCACAGACAGGCAGTCACATGACAACCCAGCCT
-------------------------------------------------------------TACAGCAGGCACAGACAGGCAG 	1
--------------------------------------------------------------ACAGCAGGCACAGACAGGCAGT 	3
--------------------------------------------------------------ACAGCAGGCACAGACAGGCAG 	5

Overlaps with: MNEST027097 MNEST005029 MNEST005688 MNEST008275 MNEST029245 MNEST029246 MNEST033026 MNEST005773 MNEST032804 MNEST005163 MNEST027519 MNEST027625 MNEST027809 MNEST028236 MNEST028330 MNEST028531 MNEST030118 MNEST030289 MNEST030907 MNEST031941
Overlaps with miRBase pre-miRNAs: sla-mir-214 cgr-mir-214 eca-mir-214 ggo-mir-214 mne-mir-214 ptr-mir-214 hsa-mir-3120 mmu-mir-214 bta-mir-3120 rno-mir-214 rno-mir-3120 ppa-mir-214 ppy-mir-214 mml-mir-214 age-mir-214 hsa-mir-214
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Mus musculus GSM539871 ACAGCAGGCACAGACAGGCAGT TGCCTGTCTACACTTGCTGTGC down 4 0


Secondary structure

CTGGACAGAGTTGTCATGTGTCTGCCTGTCTACACTTGCTGTGCAGAACATCCGCTCACCTGTACAGCAGGCACAGACAGGCAGTCACATGACAACCCAGCCTG
--------------------------------------------------------------TACAGCAGGCACAGACAGGCAGTC 	1
--------------------------------------------------------------TACAGCAGGCACAGACAGGCAGT 	1
--------------------------------------------------------------TACAGCAGGCACAGACAGGCAG 	2
--------------------------------------------------------------TACAGCAGGCACAGACAGG 	1
---------------------------------------------------------------ACAGCAGGCACAGACAGGCAGT 	9
---------------------------------------------------------------ACAGCAGGCACAGACAGGCAG 	3
---------------------------------------------------------------ACAGCAGGCACAGACAGGCA 	1

Overlaps with: MNEST027097 MNEST005029 MNEST005688 MNEST008275 MNEST029245 MNEST029246 MNEST005773 MNEST005163
Overlaps with miRBase pre-miRNAs: cgr-mir-214 eca-mir-214 hsa-mir-3120 bta-mir-3120
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Mus musculus GSM539878 ACAGCAGGCACAGACAGGCAG GCCTGTCTACACTTGCTGTGC down 3 0


Secondary structure

TGGACAGAGTTGTCATGTGTCTGCCTGTCTACACTTGCTGTGCAGAACATCCGCTCACCTGTACAGCAGGCACAGACAGGCAGTCACATGACAACCCAGCCT
---------------------TGCCTGTCTACACTTGCTGTGC 	1
----------------------GCCTGTCTACACTTGCTGTGCA 	1
----------------------GCCTGTCTACACTTGCTGTGC 	1
------------------------------------------------------------GTACAGCAGGCACAGACAGGCA 	1
------------------------------------------------------------GTACAGCAGGCACAGACAGG 	1
------------------------------------------------------------GTACAGCAGGCACAGACAGGCAG 	3
-------------------------------------------------------------TACAGCAGGCACAGACAGGC 	4
-------------------------------------------------------------TACAGCAGGCACAGACAGG 	43
-------------------------------------------------------------TACAGCAGGCACAGACAGGCAGT 	4
-------------------------------------------------------------TACAGCAGGCACAGACAGGCAG 	13
-------------------------------------------------------------TACAGCAGGCACAGACAGGCA 	4
-------------------------------------------------------------TACAGCAGGCACAGACAGGCAGTC 	4
--------------------------------------------------------------ACAGCAGGCACAGACAGGCAGT 	45
--------------------------------------------------------------ACAGCAGGCACAGACAGGCAG 	107
--------------------------------------------------------------ACAGCAGGCACAGACAGGCA 	20
--------------------------------------------------------------ACAGCAGGCACAGACAGGCAGTC 	1
--------------------------------------------------------------ACAGCAGGCACAGACAGGC 	4
---------------------------------------------------------------CAGCAGGCACAGACAGGCAGT 	1

Overlaps with: MNEST027097 MNEST005029 MNEST005688 MNEST008275 MNEST029245 MNEST029246 MNEST033026 MNEST005773 MNEST032804 MNEST005163 MNEST027519 MNEST027625 MNEST027809 MNEST028236 MNEST028330 MNEST028531 MNEST030118 MNEST030289 MNEST030907 MNEST031941
Overlaps with miRBase pre-miRNAs: sla-mir-214 cgr-mir-214 eca-mir-214 ggo-mir-214 mne-mir-214 ptr-mir-214 hsa-mir-3120 mmu-mir-214 bta-mir-3120 rno-mir-214 rno-mir-3120 ppa-mir-214 ppy-mir-214 mml-mir-214 age-mir-214 hsa-mir-214
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Mus musculus GSM539854 ACAGCAGGCACAGACAGGCAG GCCTGTCTACACTTGCTGTGC down 3 0


Secondary structure

TGGACAGAGTTGTCATGTGTCTGCCTGTCTACACTTGCTGTGCAGAACATCCGCTCACCTGTACAGCAGGCACAGACAGGCAGTCACATGACAACCCAGCCT
---------------------TGCCTGTCTACACTTGCTGTGC 	3
---------------------TGCCTGTCTACACTTGCTGTG 	1
---------------------TGCCTGTCTACACTTGCTGT 	2
----------------------GCCTGTCTACACTTGCTGTGCA 	2
----------------------GCCTGTCTACACTTGCTGTGC 	1
-------------------------------------------AGAACATCCGCTCACCTGT 	2
------------------------------------------------------------GTACAGCAGGCACAGACAGGCAG 	3
------------------------------------------------------------GTACAGCAGGCACAGACAGGC 	1
-------------------------------------------------------------TACAGCAGGCACAGACAGGCAGT 	7
-------------------------------------------------------------TACAGCAGGCACAGACAGGCAG 	46
-------------------------------------------------------------TACAGCAGGCACAGACAGGCA 	5
-------------------------------------------------------------TACAGCAGGCACAGACAGGC 	2
-------------------------------------------------------------TACAGCAGGCACAGACAGG 	14
--------------------------------------------------------------ACAGCAGGCACAGACAGGCAGTC 	6
--------------------------------------------------------------ACAGCAGGCACAGACAGGCAGT 	51
--------------------------------------------------------------ACAGCAGGCACAGACAGGCAG 	231
--------------------------------------------------------------ACAGCAGGCACAGACAGGCA 	17
--------------------------------------------------------------ACAGCAGGCACAGACAGGC 	6
---------------------------------------------------------------CAGCAGGCACAGACAGGCAGT 	2
---------------------------------------------------------------CAGCAGGCACAGACAGGCAG 	3

Overlaps with: MNEST027097 MNEST005029 MNEST005688 MNEST008275 MNEST029245 MNEST029246 MNEST033026 MNEST005773 MNEST032804 MNEST005163 MNEST027519 MNEST027625 MNEST027809 MNEST028236 MNEST028330 MNEST028531 MNEST030118 MNEST030289 MNEST030907 MNEST031941
Overlaps with miRBase pre-miRNAs: sla-mir-214 cgr-mir-214 eca-mir-214 ggo-mir-214 mne-mir-214 ptr-mir-214 hsa-mir-3120 mmu-mir-214 bta-mir-3120 rno-mir-214 rno-mir-3120 ppa-mir-214 ppy-mir-214 mml-mir-214 age-mir-214 hsa-mir-214
HuntMi prediction: true miRNA