miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: ACAGTCTCTGACTTCTCGCAG

selected species: Physcomitrella patens



7 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM115097 ACAGTCTCTGACTTCTCGCAG GCGGGAAATCAGAGACAGTCG up 3 0


Secondary structure

GTACTGATTCCGAAGGAGAAGACAGTCTCTGACTTCTCGCAGAGTGAGCCTGTTTCTGCAGTACTGGAACGATTGGTTGAGACCACTGGCACTAGGCAAAAACCTTGTTTCTGGTGACTTGGTCTGGGATCGTACAGAGCTGCAGAACGCTTGACATGCGGGAAATCAGAGACAGTCGCTTCCTTTGGTTTCTAAT
---------------------ACAGTCTCTGACTTCTCGCAG 	109
---------------------ACAGTCTCTGACTTCTCGCAGAGTG 	1
---------------------ACAGTCTCTGACTTCTCGCA 	2
----------------------CAGTCTCTGACTTCTCGCAG 	5
------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGGGAAATCAGAGACAGTC 	3
-------------------------------------------------------------------------------------------------------------------------------------------------------------GCGGGAAATCAGAGACAGT 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------GCGGGAAATCAGAGACAGTCG 	24


Overlaps with: MNEST039664 MNEST051501
Overlaps with miRBase pre-miRNAs: ppt-MIR1065
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM313212 ACAGTCTCTGACTTCTCGCAG GCGGGAAATCAGAGACAGTCG up 3 0


Secondary structure

GTACTGATTCCGAAGGAGAAGACAGTCTCTGACTTCTCGCAGAGTGAGCCTGTTTCTGCAGTACTGGAACGATTGGTTGAGACCACTGGCACTAGGCAAAAACCTTGTTTCTGGTGACTTGGTCTGGGATCGTACAGAGCTGCAGAACGCTTGACATGCGGGAAATCAGAGACAGTCGCTTCCTTTGGTTTCTAAT
---------------------ACAGTCTCTGACTTCTCGCAG 	14
---------------------ACAGTCTCTGACTTCTCGCAGA 	1


Overlaps with: MNEST039664 MNEST051501
Overlaps with miRBase pre-miRNAs: ppt-MIR1065
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM313213 ACAGTCTCTGACTTCTCGCAG GCGGGAAATCAGAGACAGTCG up 3 0


Secondary structure

GTACTGATTCCGAAGGAGAAGACAGTCTCTGACTTCTCGCAGAGTGAGCCTGTTTCTGCAGTACTGGAACGATTGGTTGAGACCACTGGCACTAGGCAAAAACCTTGTTTCTGGTGACTTGGTCTGGGATCGTACAGAGCTGCAGAACGCTTGACATGCGGGAAATCAGAGACAGTCGCTTCCTTTGGTTTCTAAT
---------------------ACAGTCTCTGACTTCTCGCA 	1
---------------------ACAGTCTCTGACTTCTCGCAG 	17
----------------------CAGTCTCTGACTTCTCGCAGA 	1


Overlaps with: MNEST039664 MNEST051501
Overlaps with miRBase pre-miRNAs: ppt-MIR1065
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Physcomitrella patens GSM313215 ACAGTCTCTGACTTCTCGCAG GCGGGAAATCAGAGACAGTCG up 3 0


Secondary structure

GTACTGATTCCGAAGGAGAAGACAGTCTCTGACTTCTCGCAGAGTGAGCCTGTTTCTGCAGTACTGGAACGATTGGTTGAGACCACTGGCACTAGGCAAAAACCTTGTTTCTGGTGACTTGGTCTGGGATCGTACAGAGCTGCAGAACGCTTGACATGCGGGAAATCAGAGACAGTCGCTTCCTTTGGTTTCTAAT
---------------------ACAGTCTCTGACTTCTCGCAG 	70
----------------------CAGTCTCTGACTTCTCGCAG 	2
-----------------------AGTCTCTGACTTCTCGCAG 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGGGAAATCAGAGACAGTC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGGGAAATCAGAGACAGT 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------GCGGGAAATCAGAGACAGTC 	8
-------------------------------------------------------------------------------------------------------------------------------------------------------------GCGGGAAATCAGAGACAGTCG 	3


Overlaps with: MNEST039664 MNEST051501
Overlaps with miRBase pre-miRNAs: ppt-MIR1065
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Physcomitrella patens GSM313216 ACAGTCTCTGACTTCTCGCAG GCGGGAAATCAGAGACAGTCG up 3 0


Secondary structure

GTACTGATTCCGAAGGAGAAGACAGTCTCTGACTTCTCGCAGAGTGAGCCTGTTTCTGCAGTACTGGAACGATTGGTTGAGACCACTGGCACTAGGCAAAAACCTTGTTTCTGGTGACTTGGTCTGGGATCGTACAGAGCTGCAGAACGCTTGACATGCGGGAAATCAGAGACAGTCGCTTCCTTTGGTTTCTAAT
---------------------ACAGTCTCTGACTTCTCGCA 	1
---------------------ACAGTCTCTGACTTCTCGCAGA 	6
---------------------ACAGTCTCTGACTTCTCGCAG 	112
----------------------CAGTCTCTGACTTCTCGCAG 	5
----------------------------------------------------------------------------------------------------------------------------------------GAGCTGCAGAACGCTTGACAT 	1
---------------------------------------------------------------------------------------------------------------------------------------------------CGCTTGACATGCGGGAAATCAGAGA 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------GCGGGAAATCAGAGACAGTC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------GCGGGAAATCAGAGACAGTCGC 	1


Overlaps with: MNEST039664 MNEST051501
Overlaps with miRBase pre-miRNAs: ppt-MIR1065
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Physcomitrella patens GSM313214 ACAGTCTCTGACTTCTCGCAG GCGGGAAATCAGAGACAGTCG up 3 0


Secondary structure

GTACTGATTCCGAAGGAGAAGACAGTCTCTGACTTCTCGCAGAGTGAGCCTGTTTCTGCAGTACTGGAACGATTGGTTGAGACCACTGGCACTAGGCAAAAACCTTGTTTCTGGTGACTTGGTCTGGGATCGTACAGAGCTGCAGAACGCTTGACATGCGGGAAATCAGAGACAGTCGCTTCCTTTGGTTTCTAAT
---------------------ACAGTCTCTGACTTCTCGCAG 	100
----------------------CAGTCTCTGACTTCTCGCAG 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGGGAAATCAGAGACAGTC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------GCGGGAAATCAGAGACAGT 	3
-------------------------------------------------------------------------------------------------------------------------------------------------------------GCGGGAAATCAGAGACAGTC 	5
-------------------------------------------------------------------------------------------------------------------------------------------------------------GCGGGAAATCAGAGACAGTCG 	4
--------------------------------------------------------------------------------------------------------------------------------------------------------------CGGGAAATCAGAGACAGTCG 	1


Overlaps with: MNEST039664 MNEST051501
Overlaps with miRBase pre-miRNAs: ppt-MIR1065
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Physcomitrella patens GSM313217 ACAGTCTCTGACTTCTCGCAG GCGGGAAATCAGAGACAGTCG up 3 0


Secondary structure

GTACTGATTCCGAAGGAGAAGACAGTCTCTGACTTCTCGCAGAGTGAGCCTGTTTCTGCAGTACTGGAACGATTGGTTGAGACCACTGGCACTAGGCAAAAACCTTGTTTCTGGTGACTTGGTCTGGGATCGTACAGAGCTGCAGAACGCTTGACATGCGGGAAATCAGAGACAGTCGCTTCCTTTGGTTTCTAAT
---------------------ACAGTCTCTGACTTCTCGCA 	2
---------------------ACAGTCTCTGACTTCTCGCAG 	88
---------------------ACAGTCTCTGACTTCTCGCAGA 	2
----------------------CAGTCTCTGACTTCTCGCAG 	2
-----------------------AGTCTCTGACTTCTCGCAG 	1
---------------------------TCTGACTTCTCGCAGAGTGAGC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------GGGAAATCAGAGACAGTCG 	1


Overlaps with: MNEST039664 MNEST051501
Overlaps with miRBase pre-miRNAs: ppt-MIR1065
HuntMi prediction: true miRNA