miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: ACATGTACCGTCGCTCTGGG

selected species: Ciona intestinalis



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Ciona intestinalis GSM343283-14443 ACATGTACCGTCGCTCTGGG CAAAGTGTCGGCGCATATTC down 4 0


Secondary structure

ACGTCATAATGGTCTAATGTCCCAAAGTGTCGGCGCATATTCTTAAATAACCGAACATGTACCGTCGCTCTGGGATGCGCGACCATTACTATC
--------------------CCCAAAGTGTCGGCGCATATTC 	4
--------------------CCCAAAGTGTCGGCGCATATT 	9
------------------------------------------------------ACATGTACCGTCGCTCTGGGAT 	323
------------------------------------------------------ACATGTACCGTCGCTCTGGGA 	304
------------------------------------------------------ACATGTACCGTCGCTCTGGG 	4314
------------------------------------------------------ACATGTACCGTCGCTCTGG 	73
-------------------------------------------------------CATGTACCGTCGCTCTGGG 	5

Overlaps with: MNEST025023 MNEST025024
Overlaps with miRBase pre-miRNAs: cin-mir-4031
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Ciona intestinalis GSM343282-14442 ACATGTACCGTCGCTCTGGG CAAAGTGTCGGCGCATATTC down 4 0


Secondary structure

ACGTCATAATGGTCTAATGTCCCAAAGTGTCGGCGCATATTCTTAAATAACCGAACATGTACCGTCGCTCTGGGATGCGCGACCATTACTATC
-----------------------------------------------------AACATGTACCGTCGCTCTGGG 	2
------------------------------------------------------ACATGTACCGTCGCTCTGGGAT 	486
------------------------------------------------------ACATGTACCGTCGCTCTGGGA 	845
------------------------------------------------------ACATGTACCGTCGCTCTGGG 	6346
------------------------------------------------------ACATGTACCGTCGCTCTGG 	236
-------------------------------------------------------CATGTACCGTCGCTCTGGGAT 	2
-------------------------------------------------------CATGTACCGTCGCTCTGGG 	6

Overlaps with: MNEST025023 MNEST025024
Overlaps with miRBase pre-miRNAs: cin-mir-4031
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Ciona intestinalis GSM343284-14444 ACATGTACCGTCGCTCTGGG CAAAGTGTCGGCGCATATTC down 4 0


Secondary structure

ACGTCATAATGGTCTAATGTCCCAAAGTGTCGGCGCATATTCTTAAATAACCGAACATGTACCGTCGCTCTGGGATGCGCGACCATTACTATC
--------------------CCCAAAGTGTCGGCGCATATTC 	29
--------------------CCCAAAGTGTCGGCGCATATT 	6
-----------------------------------------------------AACATGTACCGTCGCTCTGGG 	1
------------------------------------------------------ACATGTACCGTCGCTCTGGGAT 	266
------------------------------------------------------ACATGTACCGTCGCTCTGGGA 	47
------------------------------------------------------ACATGTACCGTCGCTCTGGG 	3452
------------------------------------------------------ACATGTACCGTCGCTCTGG 	60
-------------------------------------------------------CATGTACCGTCGCTCTGGG 	4

Overlaps with: MNEST025023 MNEST025024
Overlaps with miRBase pre-miRNAs: cin-mir-4031
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Ciona intestinalis GSM343286 ACATGTACCGTCGCTCTGGG CAAAGTGTCGGCGCATATTC down 4 0


Secondary structure

ACGTCATAATGGTCTAATGTCCCAAAGTGTCGGCGCATATTCTTAAATAACCGAACATGTACCGTCGCTCTGGGATGCGCGACCATTACTATC
--------------------CCCAAAGTGTCGGCGCATAT 	3
------------------------------------------------------ACATGTACCGTCGCTCTGGG 	807
------------------------------------------------------ACATGTACCGTCGCTCTGG 	11

Overlaps with: MNEST025023 MNEST025024
Overlaps with miRBase pre-miRNAs: cin-mir-4031
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Ciona intestinalis GSM343285 ACATGTACCGTCGCTCTGGG CAAAGTGTCGGCGCATATTC down 4 0


Secondary structure

ACGTCATAATGGTCTAATGTCCCAAAGTGTCGGCGCATATTCTTAAATAACCGAACATGTACCGTCGCTCTGGGATGCGCGACCATTACTATC
--------------------CCCAAAGTGTCGGCGCATATTC 	2
-----------------------------------------------------AACATGTACCGTCGCTCTGGG 	1
------------------------------------------------------ACATGTACCGTCGCTCTGGGAT 	559
------------------------------------------------------ACATGTACCGTCGCTCTGGGA 	59
------------------------------------------------------ACATGTACCGTCGCTCTGGG 	10471
------------------------------------------------------ACATGTACCGTCGCTCTGG 	334
-------------------------------------------------------CATGTACCGTCGCTCTGGG 	15

Overlaps with: MNEST025023 MNEST025024
Overlaps with miRBase pre-miRNAs: cin-mir-4031
HuntMi prediction: true miRNA