miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: ACCACAGGGTAGAACCACGGA

selected species: Mus musculus



12 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM539877-5198 ACCACAGGGTAGAACCACGGA CAGTGGTTTTACCCTATGGTAG down 2 1


Secondary structure

TCCCGCCCTGTGTGTCTCTCTCTGTGTCCTGCCAGTGGTTTTACCCTATGGTAGGTTACGTCATGCTGTTCTACCACAGGGTAGAACCACGGACAGGGTACTGGAGCACCCTCTGCATCGAA
--------------------------------CAGTGGTTTTACCCTATGGTA 	2
-----------------------------------------------------GGTTACGTCATGCTGTTCTA 	1
----------------------------------------------------------------------CTACCACAGGGTAGAACCACGGACA 	1
----------------------------------------------------------------------CTACCACAGGGTAGAACCACGGAC 	2
----------------------------------------------------------------------CTACCACAGGGTAGAACCAC 	1
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGACAG 	5
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGACA 	185
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGAC 	666
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGA 	1436
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGG 	146
-----------------------------------------------------------------------TACCACAGGGTAGAACCACG 	51
-----------------------------------------------------------------------TACCACAGGGTAGAACCAC 	34
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGACAG 	3
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGACA 	128
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGAC 	957
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGA 	2790
------------------------------------------------------------------------ACCACAGGGTAGAACCACGG 	435
------------------------------------------------------------------------ACCACAGGGTAGAACCACG 	64
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGACA 	5
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGAC 	27
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGA 	34
-------------------------------------------------------------------------CCACAGGGTAGAACCACGG 	4
--------------------------------------------------------------------------CACAGGGTAGAACCACGGA 	4
---------------------------------------------------------------------------ACAGGGTAGAACCACGGAC 	1


Overlaps with: MNEST026714
Overlaps with miRBase pre-miRNAs: cfa-mir-140 eca-mir-140 ssc-mir-140 mmu-mir-140 mdo-mir-140
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM539838 ACCACAGGGTAGAACCACGGA CAGTGGTTTTACCCTATGGTAG down 2 1


Secondary structure

TCCCGCCCTGTGTGTCTCTCTCTGTGTCCTGCCAGTGGTTTTACCCTATGGTAGGTTACGTCATGCTGTTCTACCACAGGGTAGAACCACGGACAGGGTACTGGAGCACCCTCTGCATCGAA
--------------------------------CAGTGGTTTTACCCTATGGTAG 	33
--------------------------------CAGTGGTTTTACCCTATGGTA 	17
--------------------------------CAGTGGTTTTACCCTATGG 	1
---------------------------------AGTGGTTTTACCCTATGGTAGGT 	1
-----------------------------------------------------GGTTACGTCATGCTGTTCTA 	2
---------------------------------------------------------------------TCTACCACAGGGTAGAACCAC 	1
----------------------------------------------------------------------CTACCACAGGGTAGAACCACGGACA 	3
----------------------------------------------------------------------CTACCACAGGGTAGAACCACGGAC 	21
----------------------------------------------------------------------CTACCACAGGGTAGAACCACGGA 	62
----------------------------------------------------------------------CTACCACAGGGTAGAACCACGG 	16
----------------------------------------------------------------------CTACCACAGGGTAGAACCACG 	1
----------------------------------------------------------------------CTACCACAGGGTAGAACCAC 	1
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGACAG 	45
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGACA 	4584
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGAC 	11444
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGA 	52665
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGG 	8536
-----------------------------------------------------------------------TACCACAGGGTAGAACCACG 	398
-----------------------------------------------------------------------TACCACAGGGTAGAACCAC 	146
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGACAGG 	1
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGACAG 	42
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGACA 	1964
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGAC 	13294
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGA 	127063
------------------------------------------------------------------------ACCACAGGGTAGAACCACGG 	7975
------------------------------------------------------------------------ACCACAGGGTAGAACCACG 	437
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGACAGG 	1
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGACA 	87
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGAC 	280
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGA 	1660
-------------------------------------------------------------------------CCACAGGGTAGAACCACGG 	133
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGACAG 	3
--------------------------------------------------------------------------CACAGGGTAGAACCACGGACA 	16
--------------------------------------------------------------------------CACAGGGTAGAACCACGGAC 	9
--------------------------------------------------------------------------CACAGGGTAGAACCACGGA 	68
--------------------------------------------------------------------------CACAGGGTAGAACCACGGACAG 	1
---------------------------------------------------------------------------ACAGGGTAGAACCACGGACA 	3
---------------------------------------------------------------------------ACAGGGTAGAACCACGGAC 	13


Overlaps with: MNEST026714
Overlaps with miRBase pre-miRNAs: cfa-mir-140 eca-mir-140 ssc-mir-140 mmu-mir-140 mdo-mir-140
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM539864 ACCACAGGGTAGAACCACGGA CAGTGGTTTTACCCTATGGTAG down 2 1


Secondary structure

TCCCGCCCTGTGTGTCTCTCTCTGTGTCCTGCCAGTGGTTTTACCCTATGGTAGGTTACGTCATGCTGTTCTACCACAGGGTAGAACCACGGACAGGGTACTGGAGCACCCTCTGCATCGAA
--------------------------------CAGTGGTTTTACCCTATGGTAG 	79
--------------------------------CAGTGGTTTTACCCTATGGTA 	46
--------------------------------CAGTGGTTTTACCCTATGGTAGGT 	1
--------------------------------CAGTGGTTTTACCCTATGGTAGG 	8
--------------------------------CAGTGGTTTTACCCTATGGT 	3
--------------------------------CAGTGGTTTTACCCTATGG 	3
---------------------------------AGTGGTTTTACCCTATGGTAGGTT 	1
---------------------------------AGTGGTTTTACCCTATGGTAG 	2
---------------------------------AGTGGTTTTACCCTATGGTAGGT 	1
---------------------------------AGTGGTTTTACCCTATGGTA 	1
-----------------------------------------------------GGTTACGTCATGCTGTTCTA 	3
---------------------------------------------------------------------TCTACCACAGGGTAGAACCACGGA 	1
---------------------------------------------------------------------TCTACCACAGGGTAGAACCACGGAC 	1
----------------------------------------------------------------------CTACCACAGGGTAGAACCACGGA 	30
----------------------------------------------------------------------CTACCACAGGGTAGAACCACGG 	31
----------------------------------------------------------------------CTACCACAGGGTAGAACCACGGACA 	2
----------------------------------------------------------------------CTACCACAGGGTAGAACCACG 	4
----------------------------------------------------------------------CTACCACAGGGTAGAACCACGGAC 	5
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGACAG 	22
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGACA 	1492
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGAC 	3855
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGA 	19074
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGG 	25838
-----------------------------------------------------------------------TACCACAGGGTAGAACCACG 	6998
-----------------------------------------------------------------------TACCACAGGGTAGAACCAC 	320
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGACAG 	11
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGACA 	515
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGAC 	14189
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGA 	77105
------------------------------------------------------------------------ACCACAGGGTAGAACCACGG 	10379
------------------------------------------------------------------------ACCACAGGGTAGAACCACG 	298
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGAC 	486
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGA 	1895
-------------------------------------------------------------------------CCACAGGGTAGAACCACGG 	155
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGACAG 	2
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGACA 	40
--------------------------------------------------------------------------CACAGGGTAGAACCACGGACA 	4
--------------------------------------------------------------------------CACAGGGTAGAACCACGGA 	138
--------------------------------------------------------------------------CACAGGGTAGAACCACGGAC 	23
---------------------------------------------------------------------------ACAGGGTAGAACCACGGACA 	4
---------------------------------------------------------------------------ACAGGGTAGAACCACGGAC 	10
---------------------------------------------------------------------------ACAGGGTAGAACCACGGACAGG 	1


Overlaps with: MNEST026714
Overlaps with miRBase pre-miRNAs: cfa-mir-140 eca-mir-140 ssc-mir-140 mmu-mir-140 mdo-mir-140
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Mus musculus GSM539861 ACCACAGGGTAGAACCACGGA CAGTGGTTTTACCCTATGGTAG down 2 1


Secondary structure

TCCCGCCCTGTGTGTCTCTCTCTGTGTCCTGCCAGTGGTTTTACCCTATGGTAGGTTACGTCATGCTGTTCTACCACAGGGTAGAACCACGGACAGGGTACTGGAGCACCCTCTGCATCGAA
--------------------------------CAGTGGTTTTACCCTATGGTAG 	28
--------------------------------CAGTGGTTTTACCCTATGGTAGG 	2
--------------------------------CAGTGGTTTTACCCTATGGTA 	15
---------------------------------AGTGGTTTTACCCTATGGTAG 	1
----------------------------------------------------AGGTTACGTCATGCTGTTCTAC 	2
-----------------------------------------------------GGTTACGTCATGCTGTTCT 	2
-----------------------------------------------------GGTTACGTCATGCTGTTCTA 	14
---------------------------------------------------------------------TCTACCACAGGGTAGAACCACG 	1
----------------------------------------------------------------------CTACCACAGGGTAGAACCACGGACA 	2
----------------------------------------------------------------------CTACCACAGGGTAGAACCACGGA 	10
----------------------------------------------------------------------CTACCACAGGGTAGAACCACGG 	7
----------------------------------------------------------------------CTACCACAGGGTAGAACCACG 	5
----------------------------------------------------------------------CTACCACAGGGTAGAACCAC 	2
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGACAG 	8
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGACA 	1180
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGAC 	2495
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGA 	11991
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGG 	15423
-----------------------------------------------------------------------TACCACAGGGTAGAACCACG 	6056
-----------------------------------------------------------------------TACCACAGGGTAGAACCAC 	3432
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGACAG 	3
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGACA 	325
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGAC 	13629
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGA 	68317
------------------------------------------------------------------------ACCACAGGGTAGAACCACGG 	8899
------------------------------------------------------------------------ACCACAGGGTAGAACCACG 	7444
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGACA 	32
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGAC 	432
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGA 	1759
-------------------------------------------------------------------------CCACAGGGTAGAACCACGG 	143
--------------------------------------------------------------------------CACAGGGTAGAACCACGGACA 	1
--------------------------------------------------------------------------CACAGGGTAGAACCACGGAC 	30
--------------------------------------------------------------------------CACAGGGTAGAACCACGGA 	114
---------------------------------------------------------------------------ACAGGGTAGAACCACGGACAG 	1
---------------------------------------------------------------------------ACAGGGTAGAACCACGGACAGG 	1
---------------------------------------------------------------------------ACAGGGTAGAACCACGGAC 	3


Overlaps with: MNEST026714
Overlaps with miRBase pre-miRNAs: cfa-mir-140 eca-mir-140 ssc-mir-140 mmu-mir-140 mdo-mir-140
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Mus musculus GSM539847 ACCACAGGGTAGAACCACGGA CAGTGGTTTTACCCTATGGTAG down 2 1


Secondary structure

TCCCGCCCTGTGTGTCTCTCTCTGTGTCCTGCCAGTGGTTTTACCCTATGGTAGGTTACGTCATGCTGTTCTACCACAGGGTAGAACCACGGACAGGGTACTGGAGCACCCTCTGCATCGAA
--------------------------------CAGTGGTTTTACCCTATGGTA 	1
----------------------------------------------------------------------CTACCACAGGGTAGAACCACGGA 	4
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGACAG 	5
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGACA 	214
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGAC 	385
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGA 	3806
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGG 	4698
-----------------------------------------------------------------------TACCACAGGGTAGAACCACG 	1781
-----------------------------------------------------------------------TACCACAGGGTAGAACCAC 	702
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGACA 	69
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGAC 	1989
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGA 	19598
------------------------------------------------------------------------ACCACAGGGTAGAACCACGG 	2293
------------------------------------------------------------------------ACCACAGGGTAGAACCACG 	1149
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGACA 	1
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGAC 	34
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGA 	260
-------------------------------------------------------------------------CCACAGGGTAGAACCACGG 	27
--------------------------------------------------------------------------CACAGGGTAGAACCACGGAC 	5
--------------------------------------------------------------------------CACAGGGTAGAACCACGGA 	26
---------------------------------------------------------------------------ACAGGGTAGAACCACGGAC 	1


Overlaps with: MNEST026714
Overlaps with miRBase pre-miRNAs: cfa-mir-140 eca-mir-140 ssc-mir-140 mmu-mir-140 mdo-mir-140
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Mus musculus GSM539853 ACCACAGGGTAGAACCACGGA CAGTGGTTTTACCCTATGGTAG down 2 1


Secondary structure

TCCCGCCCTGTGTGTCTCTCTCTGTGTCCTGCCAGTGGTTTTACCCTATGGTAGGTTACGTCATGCTGTTCTACCACAGGGTAGAACCACGGACAGGGTACTGGAGCACCCTCTGCATCGAA
--------------------------------CAGTGGTTTTACCCTATGGTAG 	18
--------------------------------CAGTGGTTTTACCCTATGGTAGGT 	1
--------------------------------CAGTGGTTTTACCCTATGGTAGG 	3
--------------------------------CAGTGGTTTTACCCTATGGTA 	7
--------------------------------CAGTGGTTTTACCCTATGG 	1
---------------------------------AGTGGTTTTACCCTATGGTAGG 	1
----------------------------------------------------AGGTTACGTCATGCTGTTCTAC 	2
-----------------------------------------------------GGTTACGTCATGCTGTTCTA 	1
----------------------------------------------------------------------CTACCACAGGGTAGAACCACGGACA 	4
----------------------------------------------------------------------CTACCACAGGGTAGAACCACGGAC 	10
----------------------------------------------------------------------CTACCACAGGGTAGAACCACGGA 	5
----------------------------------------------------------------------CTACCACAGGGTAGAACCACGG 	2
----------------------------------------------------------------------CTACCACAGGGTAGAACCAC 	2
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGACAG 	109
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGACA 	3356
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGAC 	7156
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGA 	14146
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGG 	915
-----------------------------------------------------------------------TACCACAGGGTAGAACCACG 	825
-----------------------------------------------------------------------TACCACAGGGTAGAACCAC 	538
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGACAGG 	2
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGACAG 	38
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGACA 	1296
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGAC 	5783
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGA 	34712
------------------------------------------------------------------------ACCACAGGGTAGAACCACGG 	2553
------------------------------------------------------------------------ACCACAGGGTAGAACCACG 	802
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGACAGG 	1
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGACA 	95
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGAC 	195
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGA 	667
-------------------------------------------------------------------------CCACAGGGTAGAACCACGG 	55
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGACAG 	2
--------------------------------------------------------------------------CACAGGGTAGAACCACGGACA 	11
--------------------------------------------------------------------------CACAGGGTAGAACCACGGAC 	3
--------------------------------------------------------------------------CACAGGGTAGAACCACGGA 	10
---------------------------------------------------------------------------ACAGGGTAGAACCACGGACA 	1


Overlaps with: MNEST026714
Overlaps with miRBase pre-miRNAs: cfa-mir-140 eca-mir-140 ssc-mir-140 mmu-mir-140 mdo-mir-140
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Mus musculus GSM539871 TACCACAGGGTAGAACCACGGA CAGTGGTTTTACCCTATGGTAGG down 2 1


Secondary structure

TCCCGCCCTGTGTGTCTCTCTCTGTGTCCTGCCAGTGGTTTTACCCTATGGTAGGTTACGTCATGCTGTTCTACCACAGGGTAGAACCACGGACAGGGTACTGGAGCACCCTCTGCATCGAA
--------------------------------CAGTGGTTTTACCCTATGGTA 	1
----------------------------------------------------------------------CTACCACAGGGTAGAACCACGGACA 	2
----------------------------------------------------------------------CTACCACAGGGTAGAACCACGGAC 	1
----------------------------------------------------------------------CTACCACAGGGTAGAACCACGGA 	4
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGACAG 	4
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGACA 	722
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGAC 	1544
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGA 	3627
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGG 	336
-----------------------------------------------------------------------TACCACAGGGTAGAACCACG 	243
-----------------------------------------------------------------------TACCACAGGGTAGAACCAC 	649
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGACAG 	1
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGACA 	136
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGAC 	347
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGA 	2296
------------------------------------------------------------------------ACCACAGGGTAGAACCACGG 	227
------------------------------------------------------------------------ACCACAGGGTAGAACCACG 	225
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGACA 	5
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGAC 	6
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGA 	25
-------------------------------------------------------------------------CCACAGGGTAGAACCACGG 	2
--------------------------------------------------------------------------CACAGGGTAGAACCACGGA 	3


Overlaps with: MNEST026714
Overlaps with miRBase pre-miRNAs: cfa-mir-140 eca-mir-140 ssc-mir-140 mmu-mir-140 mdo-mir-140
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Mus musculus GSM539878 ACCACAGGGTAGAACCACGGA CAGTGGTTTTACCCTATGGTAG down 2 1


Secondary structure

TCCCGCCCTGTGTGTCTCTCTCTGTGTCCTGCCAGTGGTTTTACCCTATGGTAGGTTACGTCATGCTGTTCTACCACAGGGTAGAACCACGGACAGGGTACTGGAGCACCCTCTGCATCGAA
--------------------------------CAGTGGTTTTACCCTATGGTAG 	2
--------------------------------CAGTGGTTTTACCCTATGGTA 	2
-----------------------------------------------------GGTTACGTCATGCTGTTCT 	1
----------------------------------------------------------------------CTACCACAGGGTAGAACCACGGA 	2
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGACAG 	13
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGACA 	683
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGAC 	2299
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGA 	3534
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGG 	389
-----------------------------------------------------------------------TACCACAGGGTAGAACCACG 	154
-----------------------------------------------------------------------TACCACAGGGTAGAACCAC 	147
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGACAG 	7
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGACA 	657
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGAC 	4195
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGA 	12997
------------------------------------------------------------------------ACCACAGGGTAGAACCACGG 	1485
------------------------------------------------------------------------ACCACAGGGTAGAACCACG 	457
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGACA 	28
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGAC 	133
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGA 	227
-------------------------------------------------------------------------CCACAGGGTAGAACCACGG 	31
--------------------------------------------------------------------------CACAGGGTAGAACCACGGACA 	2
--------------------------------------------------------------------------CACAGGGTAGAACCACGGAC 	4
--------------------------------------------------------------------------CACAGGGTAGAACCACGGA 	5


Overlaps with: MNEST026714
Overlaps with miRBase pre-miRNAs: cfa-mir-140 eca-mir-140 ssc-mir-140 mmu-mir-140 mdo-mir-140
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Mus musculus GSM539875 ACCACAGGGTAGAACCACGGA CAGTGGTTTTACCCTATGGTAG down 2 1


Secondary structure

TCCCGCCCTGTGTGTCTCTCTCTGTGTCCTGCCAGTGGTTTTACCCTATGGTAGGTTACGTCATGCTGTTCTACCACAGGGTAGAACCACGGACAGGGTACTGGAGCACCCTCTGCATCGAA
--------------------------------CAGTGGTTTTACCCTATGGTAG 	9
--------------------------------CAGTGGTTTTACCCTATGGTA 	9
--------------------------------CAGTGGTTTTACCCTATGGTAGGT 	1
-----------------------------------------------------GGTTACGTCATGCTGTTCTA 	1
----------------------------------------------------------------------CTACCACAGGGTAGAACCACGGAC 	2
----------------------------------------------------------------------CTACCACAGGGTAGAACCACGG 	5
----------------------------------------------------------------------CTACCACAGGGTAGAACCACGGA 	10
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGACAG 	47
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGACA 	1525
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGAC 	4315
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGA 	10879
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGG 	11014
-----------------------------------------------------------------------TACCACAGGGTAGAACCACG 	3379
-----------------------------------------------------------------------TACCACAGGGTAGAACCAC 	142
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGACAG 	5
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGACA 	424
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGAC 	10117
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGA 	31522
------------------------------------------------------------------------ACCACAGGGTAGAACCACGG 	2881
------------------------------------------------------------------------ACCACAGGGTAGAACCACG 	78
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGACAGG 	1
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGACA 	18
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGAC 	277
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGA 	574
-------------------------------------------------------------------------CCACAGGGTAGAACCACGG 	54
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGACAG 	1
--------------------------------------------------------------------------CACAGGGTAGAACCACGGACA 	2
--------------------------------------------------------------------------CACAGGGTAGAACCACGGAC 	14
--------------------------------------------------------------------------CACAGGGTAGAACCACGGA 	43
---------------------------------------------------------------------------ACAGGGTAGAACCACGGACAGG 	2
---------------------------------------------------------------------------ACAGGGTAGAACCACGGACA 	1
---------------------------------------------------------------------------ACAGGGTAGAACCACGGAC 	1


Overlaps with: MNEST026714
Overlaps with miRBase pre-miRNAs: cfa-mir-140 eca-mir-140 ssc-mir-140 mmu-mir-140 mdo-mir-140
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Mus musculus GSM539857 ACCACAGGGTAGAACCACGGA CAGTGGTTTTACCCTATGGTAG down 2 1


Secondary structure

TCCCGCCCTGTGTGTCTCTCTCTGTGTCCTGCCAGTGGTTTTACCCTATGGTAGGTTACGTCATGCTGTTCTACCACAGGGTAGAACCACGGACAGGGTACTGGAGCACCCTCTGCATCGAA
--------------------------------CAGTGGTTTTACCCTATGGTAG 	17
--------------------------------CAGTGGTTTTACCCTATGGTA 	10
---------------------------------------------------------------------TCTACCACAGGGTAGAACCACGG 	1
----------------------------------------------------------------------CTACCACAGGGTAGAACCACGGACA 	1
----------------------------------------------------------------------CTACCACAGGGTAGAACCACGGAC 	4
----------------------------------------------------------------------CTACCACAGGGTAGAACCACGGA 	18
----------------------------------------------------------------------CTACCACAGGGTAGAACCACGG 	11
----------------------------------------------------------------------CTACCACAGGGTAGAACCACG 	5
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGACAG 	22
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGACA 	1404
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGAC 	3125
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGA 	25295
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGG 	26334
-----------------------------------------------------------------------TACCACAGGGTAGAACCACG 	8853
-----------------------------------------------------------------------TACCACAGGGTAGAACCAC 	548
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGACAG 	15
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGACA 	800
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGAC 	13219
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGA 	89401
------------------------------------------------------------------------ACCACAGGGTAGAACCACGG 	7263
------------------------------------------------------------------------ACCACAGGGTAGAACCACG 	270
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGACA 	26
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGAC 	283
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGA 	1335
-------------------------------------------------------------------------CCACAGGGTAGAACCACGG 	132
--------------------------------------------------------------------------CACAGGGTAGAACCACGGACA 	3
--------------------------------------------------------------------------CACAGGGTAGAACCACGGAC 	7
--------------------------------------------------------------------------CACAGGGTAGAACCACGGA 	110
---------------------------------------------------------------------------ACAGGGTAGAACCACGGAC 	1


Overlaps with: MNEST026714
Overlaps with miRBase pre-miRNAs: cfa-mir-140 eca-mir-140 ssc-mir-140 mmu-mir-140 mdo-mir-140
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Mus musculus GSM539867 ACCACAGGGTAGAACCACGGA CAGTGGTTTTACCCTATGGTAG down 2 1


Secondary structure

TCCCGCCCTGTGTGTCTCTCTCTGTGTCCTGCCAGTGGTTTTACCCTATGGTAGGTTACGTCATGCTGTTCTACCACAGGGTAGAACCACGGACAGGGTACTGGAGCACCCTCTGCATCGAA
--------------------------------CAGTGGTTTTACCCTATGGTAGGT 	1
--------------------------------CAGTGGTTTTACCCTATGGTAG 	28
--------------------------------CAGTGGTTTTACCCTATGGTA 	17
--------------------------------CAGTGGTTTTACCCTATGGT 	1
--------------------------------CAGTGGTTTTACCCTATGGTAGG 	5
---------------------------------AGTGGTTTTACCCTATGGTAGG 	1
---------------------------------AGTGGTTTTACCCTATGGTAG 	1
-----------------------------------------------------GGTTACGTCATGCTGTTCTA 	18
-----------------------------------------------------GGTTACGTCATGCTGTTCT 	1
----------------------------------------------------------------------CTACCACAGGGTAGAACCACGGACAG 	1
----------------------------------------------------------------------CTACCACAGGGTAGAACCACGGACA 	5
----------------------------------------------------------------------CTACCACAGGGTAGAACCACGGAC 	34
----------------------------------------------------------------------CTACCACAGGGTAGAACCACGGA 	8
----------------------------------------------------------------------CTACCACAGGGTAGAACCACGG 	7
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGACAG 	52
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGACA 	6113
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGAC 	18427
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGA 	8493
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGG 	1434
-----------------------------------------------------------------------TACCACAGGGTAGAACCACG 	67
-----------------------------------------------------------------------TACCACAGGGTAGAACCAC 	82
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGACAGGG 	1
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGACAG 	43
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGACA 	3170
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGAC 	21393
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGA 	56180
------------------------------------------------------------------------ACCACAGGGTAGAACCACGG 	3576
------------------------------------------------------------------------ACCACAGGGTAGAACCACG 	228
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGACAGG 	4
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGACAG 	1
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGACA 	74
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGAC 	387
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGA 	756
-------------------------------------------------------------------------CCACAGGGTAGAACCACGG 	41
--------------------------------------------------------------------------CACAGGGTAGAACCACGGACA 	16
--------------------------------------------------------------------------CACAGGGTAGAACCACGGAC 	8
--------------------------------------------------------------------------CACAGGGTAGAACCACGGA 	36
--------------------------------------------------------------------------CACAGGGTAGAACCACGGACAG 	2
---------------------------------------------------------------------------ACAGGGTAGAACCACGGACAGG 	3
---------------------------------------------------------------------------ACAGGGTAGAACCACGGACAG 	1
---------------------------------------------------------------------------ACAGGGTAGAACCACGGACA 	4
---------------------------------------------------------------------------ACAGGGTAGAACCACGGAC 	26
----------------------------------------------------------------------------CAGGGTAGAACCACGGACA 	1


Overlaps with: MNEST026714
Overlaps with miRBase pre-miRNAs: cfa-mir-140 eca-mir-140 ssc-mir-140 mmu-mir-140 mdo-mir-140
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Mus musculus GSM539876 ACCACAGGGTAGAACCACGGA CAGTGGTTTTACCCTATGGTAG down 2 1


Secondary structure

TCCCGCCCTGTGTGTCTCTCTCTGTGTCCTGCCAGTGGTTTTACCCTATGGTAGGTTACGTCATGCTGTTCTACCACAGGGTAGAACCACGGACAGGGTACTGGAGCACCCTCTGCATCGAA
--------------------------------CAGTGGTTTTACCCTATGGTAG 	13
--------------------------------CAGTGGTTTTACCCTATGGTA 	3
--------------------------------CAGTGGTTTTACCCTATGG 	2
---------------------------------AGTGGTTTTACCCTATGGTA 	1
-----------------------------------------------------GGTTACGTCATGCTGTTCTA 	1
----------------------------------------------------------------------CTACCACAGGGTAGAACCACGGACA 	2
----------------------------------------------------------------------CTACCACAGGGTAGAACCACGGAC 	3
----------------------------------------------------------------------CTACCACAGGGTAGAACCACGGA 	9
----------------------------------------------------------------------CTACCACAGGGTAGAACCACGG 	9
----------------------------------------------------------------------CTACCACAGGGTAGAACCACG 	3
----------------------------------------------------------------------CTACCACAGGGTAGAACCAC 	1
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGACAG 	24
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGACA 	1478
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGAC 	3751
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGGA 	10535
-----------------------------------------------------------------------TACCACAGGGTAGAACCACGG 	11108
-----------------------------------------------------------------------TACCACAGGGTAGAACCACG 	3531
-----------------------------------------------------------------------TACCACAGGGTAGAACCAC 	208
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGACAG 	6
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGACA 	433
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGAC 	9795
------------------------------------------------------------------------ACCACAGGGTAGAACCACGGA 	31605
------------------------------------------------------------------------ACCACAGGGTAGAACCACGG 	3175
------------------------------------------------------------------------ACCACAGGGTAGAACCACG 	96
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGACA 	20
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGAC 	230
-------------------------------------------------------------------------CCACAGGGTAGAACCACGGA 	596
-------------------------------------------------------------------------CCACAGGGTAGAACCACGG 	50
--------------------------------------------------------------------------CACAGGGTAGAACCACGGACA 	4
--------------------------------------------------------------------------CACAGGGTAGAACCACGGAC 	18
--------------------------------------------------------------------------CACAGGGTAGAACCACGGA 	40
---------------------------------------------------------------------------ACAGGGTAGAACCACGGAC 	2


Overlaps with: MNEST026714
Overlaps with miRBase pre-miRNAs: cfa-mir-140 eca-mir-140 ssc-mir-140 mmu-mir-140 mdo-mir-140
HuntMi prediction: true miRNA