miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: ACCCGAGCGGTCTGAGCAAACT

selected species: Bombyx mori



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Bombyx mori GSM449726_Anterior_silkgland_clean ACCCGAGCGGTCTGAGCAAACT TTTGTTCGCCCCGGCTCGTGTCG up 3 1


Secondary structure

AAACTGGTTGACAGCAAGGCGACCCGAGCGGTCTGAGCAAACTGTGACAATATCTAGTTTGTTCGCCCCGGCTCGTGTCGCCAAGCGTCACTTACCAA
--------------------GACCCGAGCGGTCTGAGCAAACT 	10
--------------------GACCCGAGCGGTCTGAGCAAA 	2
---------------------ACCCGAGCGGTCTGAGCAAACT 	7706
---------------------ACCCGAGCGGTCTGAGCAAAC 	1171
---------------------ACCCGAGCGGTCTGAGCAAA 	497
---------------------ACCCGAGCGGTCTGAGCAA 	136
---------------------ACCCGAGCGGTCTGAGCAAACTG 	4
----------------------CCCGAGCGGTCTGAGCAAACT 	153
----------------------CCCGAGCGGTCTGAGCAAAC 	36
----------------------CCCGAGCGGTCTGAGCAAA 	28
----------------------CCCGAGCGGTCTGAGCAAACTG 	7
-----------------------CCGAGCGGTCTGAGCAAACT 	10
-----------------------CCGAGCGGTCTGAGCAAAC 	2
------------------------CGAGCGGTCTGAGCAAACT 	8
---------------------------------------------------------TTTGTTCGCCCCGGCTCGTGTCG 	1663
---------------------------------------------------------TTTGTTCGCCCCGGCTCGTGTC 	209
---------------------------------------------------------TTTGTTCGCCCCGGCTCGTGT 	112
---------------------------------------------------------TTTGTTCGCCCCGGCTCGTG 	56
---------------------------------------------------------TTTGTTCGCCCCGGCTCGTGTCGC 	33
---------------------------------------------------------TTTGTTCGCCCCGGCTCGT 	4
---------------------------------------------------------TTTGTTCGCCCCGGCTCGTGTCGCC 	1
----------------------------------------------------------TTGTTCGCCCCGGCTCGTGTCG 	2
----------------------------------------------------------TTGTTCGCCCCGGCTCGTGT 	2
----------------------------------------------------------TTGTTCGCCCCGGCTCGTGTCGC 	1


Overlaps with: MNEST035568
Overlaps with miRBase pre-miRNAs: bmo-mir-375
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Bombyx mori GSM449727_Posterior_silkgland_clean ACCCGAGCGGTCTGAGCAAACT TTTGTTCGCCCCGGCTCGTGTCG up 3 1


Secondary structure

AAACTGGTTGACAGCAAGGCGACCCGAGCGGTCTGAGCAAACTGTGACAATATCTAGTTTGTTCGCCCCGGCTCGTGTCGCCAAGCGTCACTTACCAA
---------------------ACCCGAGCGGTCTGAGCAAACT 	1485
---------------------ACCCGAGCGGTCTGAGCAAAC 	351
---------------------ACCCGAGCGGTCTGAGCAAA 	176
---------------------ACCCGAGCGGTCTGAGCAA 	91
---------------------ACCCGAGCGGTCTGAGCAAACTG 	1
----------------------CCCGAGCGGTCTGAGCAAACT 	63
----------------------CCCGAGCGGTCTGAGCAAAC 	24
----------------------CCCGAGCGGTCTGAGCAAA 	14
----------------------CCCGAGCGGTCTGAGCAAACTG 	3
-----------------------CCGAGCGGTCTGAGCAAACT 	12
-----------------------CCGAGCGGTCTGAGCAAAC 	1
------------------------CGAGCGGTCTGAGCAAACT 	2
---------------------------------------------------------TTTGTTCGCCCCGGCTCGTGTCG 	741
---------------------------------------------------------TTTGTTCGCCCCGGCTCGTGTC 	108
---------------------------------------------------------TTTGTTCGCCCCGGCTCGTGT 	62
---------------------------------------------------------TTTGTTCGCCCCGGCTCGTGTCGC 	16
---------------------------------------------------------TTTGTTCGCCCCGGCTCGTG 	39


Overlaps with: MNEST035568
Overlaps with miRBase pre-miRNAs: bmo-mir-375
HuntMi prediction: true miRNA