miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: ACCCGTCCCGTTCGTCCCCGGA

selected species: Mus musculus



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM527276 ACCCGTCCCGTTCGTCCCCGGA CGGGAACGTCGAGACTGGAGC up 6 1


Secondary structure

GCAGCCCCGGCCGCCGGGCGCACCCGTCCCGTTCGTCCCCGGACGTTGCTCTCTGCCCCGGGAACGTCGAGACTGGAGCGCCCGAACTGAGCCACCT
---------------------ACCCGTCCCGTTCGTCCCCGG 	1
---------------------ACCCGTCCCGTTCGTCCCCGGA 	7

Overlaps with: MNEST005118
Overlaps with miRBase pre-miRNAs: mmu-mir-1247
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM527277-2110 ACCCGTCCCGTTCGTCCCCGGA CGGGAACGTCGAGACTGGAGC up 6 1


Secondary structure

GCAGCCCCGGCCGCCGGGCGCACCCGTCCCGTTCGTCCCCGGACGTTGCTCTCTGCCCCGGGAACGTCGAGACTGGAGCGCCCGAACTGAGCCACCT
---------------------ACCCGTCCCGTTCGTCCCCGGA 	5
---------------------ACCCGTCCCGTTCGTCCCCGG 	4

Overlaps with: MNEST005118
Overlaps with miRBase pre-miRNAs: mmu-mir-1247
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM539864 ACCCGTCCCGTTCGTCCCCGGA CGGGAACGTCGAGACTGGAGC up 6 1


Secondary structure

GCAGCCCCGGCCGCCGGGCGCACCCGTCCCGTTCGTCCCCGGACGTTGCTCTCTGCCCCGGGAACGTCGAGACTGGAGCGCCCGAACTGAGCCACCT
--------------------CACCCGTCCCGTTCGTCCCC 	1
---------------------ACCCGTCCCGTTCGTCCCCGGA 	6
---------------------ACCCGTCCCGTTCGTCCCCGG 	2

Overlaps with: MNEST005118
Overlaps with miRBase pre-miRNAs: mmu-mir-1247
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Mus musculus GSM539878 ACCCGTCCCGTTCGTCCCCGGA CGGGAACGTCGAGACTGGAGC up 6 1


Secondary structure

GCAGCCCCGGCCGCCGGGCGCACCCGTCCCGTTCGTCCCCGGACGTTGCTCTCTGCCCCGGGAACGTCGAGACTGGAGCGCCCGAACTGAGCCACCT
---------------------ACCCGTCCCGTTCGTCCCCGGA 	12
---------------------ACCCGTCCCGTTCGTCCCCGG 	2
---------------------ACCCGTCCCGTTCGTCCCCG 	2
---------------------ACCCGTCCCGTTCGTCCCC 	5
----------------------------------------------------------CGGGAACGTCGAGACTGGAG 	1
----------------------------------------------------------CGGGAACGTCGAGACTGGAGC 	8
----------------------------------------------------------CGGGAACGTCGAGACTGGA 	1

Overlaps with: MNEST005118
Overlaps with miRBase pre-miRNAs: mmu-mir-1247
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Mus musculus GSM539857 ACCCGTCCCGTTCGTCCCCGGA CGGGAACGTCGAGACTGGAGC up 6 1


Secondary structure

GCAGCCCCGGCCGCCGGGCGCACCCGTCCCGTTCGTCCCCGGACGTTGCTCTCTGCCCCGGGAACGTCGAGACTGGAGCGCCCGAACTGAGCCACCT
---------------------ACCCGTCCCGTTCGTCCCCGGA 	9
---------------------ACCCGTCCCGTTCGTCCCCG 	3
---------------------ACCCGTCCCGTTCGTCCCCGG 	2
----------------------------------------------------------CGGGAACGTCGAGACTGGA 	1

Overlaps with: MNEST005118
Overlaps with miRBase pre-miRNAs: mmu-mir-1247
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Mus musculus GSM527279-2112 ACCCGTCCCGTTCGTCCCCGGA CGGGAACGTCGAGACTGGAGC up 6 1


Secondary structure

GCAGCCCCGGCCGCCGGGCGCACCCGTCCCGTTCGTCCCCGGACGTTGCTCTCTGCCCCGGGAACGTCGAGACTGGAGCGCCCGAACTGAGCCACCT
--------------------CACCCGTCCCGTTCGTCCCCGG 	1
---------------------ACCCGTCCCGTTCGTCCCCGGA 	6
---------------------ACCCGTCCCGTTCGTCCCCGG 	2
-----------------------CCGTCCCGTTCGTCCCCGGA 	1
----------------------------------------------------------CGGGAACGTCGAGACTGGAGC 	3
-----------------------------------------------------------GGGAACGTCGAGACTGGAGCG 	1

Overlaps with: MNEST005118
Overlaps with miRBase pre-miRNAs: mmu-mir-1247
HuntMi prediction: true miRNA