miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: ACCCTGTAGATCCGAATTTGTT

selected species: Drosophila melanogaster



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Drosophila melanogaster GSM343833-15151 ACCCTGTAGATCCGAATTTGTT CAAATTCGGTTCTAGAGAGGTTT up 2 1


Secondary structure

TCATCAGTTTGCTCCACGTCTACCCTGTAGATCCGAATTTGTTTTATACTAGCTTTAAGGACAAATTCGGTTCTAGAGAGGTTTGTGTGGTTCAATATCCAT
---------------------ACCCTGTAGATCCGAATTTGTT 	6
---------------------ACCCTGTAGATCCGAATTTGT 	1
-------------------------------------------------------------CAAATTCGGTTCTAGAGAGGTTT 	2
-------------------------------------------------------------CAAATTCGGTTCTAGAGAGGTT 	1

Overlaps with: MNEST036353 MNEST036354 MNEST037129 MNEST037205
Overlaps with miRBase pre-miRNAs: dse-mir-10 dsi-mir-10 dme-mir-10
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Drosophila melanogaster GSM399100-5263 ACCCTGTAGATCCGAATTTGTT CAAATTCGGTTCTAGAGAGGTTT up 2 1


Secondary structure

TCATCAGTTTGCTCCACGTCTACCCTGTAGATCCGAATTTGTTTTATACTAGCTTTAAGGACAAATTCGGTTCTAGAGAGGTTTGTGTGGTTCAATATCCAT
---------------------ACCCTGTAGATCCGAATTTGTT 	11
---------------------ACCCTGTAGATCCGAATTTGT 	2
-------------------------------------------------------------CAAATTCGGTTCTAGAGAGGTTT 	6
-------------------------------------------------------------CAAATTCGGTTCTAGAGAGGTT 	2

Overlaps with: MNEST036353 MNEST036354 MNEST037129 MNEST037205
Overlaps with miRBase pre-miRNAs: dse-mir-10 dsi-mir-10 dme-mir-10
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Drosophila melanogaster GSM399101-5265 ACCCTGTAGATCCGAATTTGTT CAAATTCGGTTCTAGAGAGGTTT up 2 1


Secondary structure

TCATCAGTTTGCTCCACGTCTACCCTGTAGATCCGAATTTGTTTTATACTAGCTTTAAGGACAAATTCGGTTCTAGAGAGGTTTGTGTGGTTCAATATCCAT
---------------------ACCCTGTAGATCCGAATTTGTT 	18
---------------------ACCCTGTAGATCCGAATTTGT 	4
---------------------ACCCTGTAGATCCGAATTTG 	1
-------------------------------------------------------------CAAATTCGGTTCTAGAGAGGTTT 	8
-------------------------------------------------------------CAAATTCGGTTCTAGAGAGGTT 	1

Overlaps with: MNEST036353 MNEST036354 MNEST037129 MNEST037205
Overlaps with miRBase pre-miRNAs: dse-mir-10 dsi-mir-10 dme-mir-10
HuntMi prediction: true miRNA