miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: ACCTCCATAGTACCTGCAGCGT

selected species: Mus musculus



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM539838 ACCTCCATAGTACCTGCAGCGT GGTGCAGTTACTGTGGCTGTGG up 4 0


Secondary structure

CTGGACCACATGCCCACGGTCACCTCCATAGTACCTGCAGCGTGCTTGACTTTCTCTATGGTGCAGTTACTGTGGCTGTGGCTGTGTTCGTGCCTCAGA
---------------------ACCTCCATAGTACCTGCAGCGT 	6

Overlaps with: MNEST004996
Overlaps with miRBase pre-miRNAs: mmu-mir-1930
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM539850 ACCTCCATAGTACCTGCAGCGT GGTGCAGTTACTGTGGCTGTGG up 4 0


Secondary structure

CTGGACCACATGCCCACGGTCACCTCCATAGTACCTGCAGCGTGCTTGACTTTCTCTATGGTGCAGTTACTGTGGCTGTGGCTGTGTTCGTGCCTCAGA
---------------------ACCTCCATAGTACCTGCAGCGT 	8

Overlaps with: MNEST004996
Overlaps with miRBase pre-miRNAs: mmu-mir-1930
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM539835 ACCTCCATAGTACCTGCAGCGT GGTGCAGTTACTGTGGCTGTGG up 4 0


Secondary structure

CTGGACCACATGCCCACGGTCACCTCCATAGTACCTGCAGCGTGCTTGACTTTCTCTATGGTGCAGTTACTGTGGCTGTGGCTGTGTTCGTGCCTCAGA
---------------------ACCTCCATAGTACCTGCAGCGT 	8

Overlaps with: MNEST004996
Overlaps with miRBase pre-miRNAs: mmu-mir-1930
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Mus musculus GSM539855 ACCTCCATAGTACCTGCAGCGT GGTGCAGTTACTGTGGCTGTGG up 4 0


Secondary structure

CTGGACCACATGCCCACGGTCACCTCCATAGTACCTGCAGCGTGCTTGACTTTCTCTATGGTGCAGTTACTGTGGCTGTGGCTGTGTTCGTGCCTCAGA
---------------------ACCTCCATAGTACCTGCAGCGT 	13
-----------------------------------------------------------GGTGCAGTTACTGTGGCTGTGG 	2
-----------------------------------------------------------GGTGCAGTTACTGTGGCTGTGGC 	1

Overlaps with: MNEST004996
Overlaps with miRBase pre-miRNAs: mmu-mir-1930
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Mus musculus GSM527277-2110 ACCTCCATAGTACCTGCAGCGT GGTGCAGTTACTGTGGCTGTGG up 4 0


Secondary structure

CTGGACCACATGCCCACGGTCACCTCCATAGTACCTGCAGCGTGCTTGACTTTCTCTATGGTGCAGTTACTGTGGCTGTGGCTGTGTTCGTGCCTCAGA
---------------------ACCTCCATAGTACCTGCAGCGT 	5
----------------------CCTCCATAGTACCTGCAGCGT 	1

Overlaps with: MNEST004996
Overlaps with miRBase pre-miRNAs: mmu-mir-1930
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Mus musculus GSM539864 ACCTCCATAGTACCTGCAGCGT GGTGCAGTTACTGTGGCTGTGG up 4 0


Secondary structure

CTGGACCACATGCCCACGGTCACCTCCATAGTACCTGCAGCGTGCTTGACTTTCTCTATGGTGCAGTTACTGTGGCTGTGGCTGTGTTCGTGCCTCAGA
---------------------ACCTCCATAGTACCTGCAGCGT 	8

Overlaps with: MNEST004996
Overlaps with miRBase pre-miRNAs: mmu-mir-1930
HuntMi prediction: true miRNA