miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: ACCTTTTGATGTACTACTTTAA

selected species: Drosophila melanogaster

3 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Drosophila melanogaster	GSM286605-9793	ACCTTTTGATGTACTACTTTAA	TAAGTAGTATCCATTAAAGGGTTG	down	3	2

Secondary structure

AAATTGTTGATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATGCAAATCAACCTTTTGATGTACTACTTTAAGAATCTCCAGTTAAAGTCA
----------------------TAAGTAGTATCCATTAAAGGGTTGT 	1
----------------------TAAGTAGTATCCATTAAAGGGTT 	3
----------------------TAAGTAGTATCCATTAAAGGGTTG 	55
----------------------TAAGTAGTATCCATTAAAGGG 	2
---------------------------------------------------------------AACCTTTTGATGTACTACTTTAA 	3
----------------------------------------------------------------ACCTTTTGATGTACTACTTTAA 	174
----------------------------------------------------------------ACCTTTTGATGTACTACTTTA 	25
-----------------------------------------------------------------CCTTTTGATGTACTACTTTAA 	2
-----------------------------------------------------------------CCTTTTGATGTACTACTTTA 	1

Overlaps with: MNEST036511 MNEST036512
Overlaps with miRBase pre-miRNAs: dme-mir-968
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Drosophila melanogaster	GSM286607-9796	ACCTTTTGATGTACTACTTTAA	TAAGTAGTATCCATTAAAGGGTTG	down	3	2

Secondary structure

AAATTGTTGATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATGCAAATCAACCTTTTGATGTACTACTTTAAGAATCTCCAGTTAAAGTCA
----------------------TAAGTAGTATCCATTAAAGGGTTGT 	25
----------------------TAAGTAGTATCCATTAAAGGGTTG 	637
----------------------TAAGTAGTATCCATTAAAGG 	6
----------------------TAAGTAGTATCCATTAAAGGG 	4
----------------------TAAGTAGTATCCATTAAAGGGT 	1
----------------------TAAGTAGTATCCATTAAAGGGTT 	1
------------------------AGTAGTATCCATTAAAGGGTTG 	4
--------------------------------------------------------------CAACCTTTTGATGTACTACTTTA 	1
---------------------------------------------------------------AACCTTTTGATGTACTACTTTAA 	4
---------------------------------------------------------------AACCTTTTGATGTACTACTTTA 	1
----------------------------------------------------------------ACCTTTTGATGTACTACTTT 	5
----------------------------------------------------------------ACCTTTTGATGTACTACTTTA 	150
----------------------------------------------------------------ACCTTTTGATGTACTACTTTAA 	694
-----------------------------------------------------------------CCTTTTGATGTACTACTTTAA 	3
-----------------------------------------------------------------CCTTTTGATGTACTACTTTAAG 	4
-----------------------------------------------------------------CCTTTTGATGTACTACTTTA 	3

Overlaps with: MNEST036511 MNEST036512
Overlaps with miRBase pre-miRNAs: dme-mir-968
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Drosophila melanogaster	GSM286604-9792	ACCTTTTGATGTACTACTTTAA	TAAGTAGTATCCATTAAAGGGTTG	down	3	2

Secondary structure

AAATTGTTGATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATGCAAATCAACCTTTTGATGTACTACTTTAAGAATCTCCAGTTAAAGTCA
----------------------TAAGTAGTATCCATTAAAGGGTTG 	27
----------------------------------------------------------------ACCTTTTGATGTACTACTTTA 	9
----------------------------------------------------------------ACCTTTTGATGTACTACTTTAA 	53

Overlaps with: MNEST036511 MNEST036512
Overlaps with miRBase pre-miRNAs: dme-mir-968
HuntMi prediction: true miRNA