miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: ACGAAGGATCTGCAATATAAA

selected species: Physcomitrella patens



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM115097 ACGAAGGATCTGCAATATAAA TATGTTGCAGATTCTTCATTT down 3 0


Secondary structure

TGCATAGATTATCTTTCTATTCTATGTTGCAGATTCTTCATTTGCCGCTCTGCTGAATGATCATATTGCGGGTGAAGCAAACGAAGGATCTGCAATATAAACCAGAAAAGGTAATCGTAT
------------------ATTCTATGTTGCAGATTCTTC 	1
----------------------TATGTTGCAGATTCTTCATTT 	12
----------------------TATGTTGCAGATTCTTCATT 	5
------------------------TGTTGCAGATTCTTCATTTGC 	2
------------------------TGTTGCAGATTCTTCATTT 	1
------------------------------------------------------------------------------AAACGAAGGATCTGCAATATAAA 	1
--------------------------------------------------------------------------------ACGAAGGATCTGCAATATAAA 	67
--------------------------------------------------------------------------------ACGAAGGATCTGCAATATA 	1
---------------------------------------------------------------------------------CGAAGGATCTGCAATATAAACC 	1
---------------------------------------------------------------------------------CGAAGGATCTGCAATATAAAC 	25
---------------------------------------------------------------------------------CGAAGGATCTGCAATATAAA 	8


Overlaps with: MNEST039565 MNEST039566
Overlaps with miRBase pre-miRNAs: ppt-MIR902k
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM313215 ACGAAGGATCTGCAATATAAA TATGTTGCAGATTCTTCATTT down 3 0


Secondary structure

TGCATAGATTATCTTTCTATTCTATGTTGCAGATTCTTCATTTGCCGCTCTGCTGAATGATCATATTGCGGGTGAAGCAAACGAAGGATCTGCAATATAAACCAGAAAAGGTAATCGTAT
---------------------CTATGTTGCAGATTCTTCATTT 	2
---------------------CTATGTTGCAGATTCTTCATT 	8
----------------------TATGTTGCAGATTCTTCATTT 	4
------------------------TGTTGCAGATTCTTCATTTGC 	1
--------------------------------------------------------------------------------ACGAAGGATCTGCAATATAAAC 	1
--------------------------------------------------------------------------------ACGAAGGATCTGCAATATAAA 	23
---------------------------------------------------------------------------------CGAAGGATCTGCAATATAAAC 	3
---------------------------------------------------------------------------------CGAAGGATCTGCAATATAAA 	3
------------------------------------------------------------------------------------AGGATCTGCAATATAAACCAG 	3


Overlaps with: MNEST039565 MNEST039566
Overlaps with miRBase pre-miRNAs: ppt-MIR902k
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM115096 ACGAAGGATCTGCAATATAAA TATGTTGCAGATTCTTCATTT down 3 0


Secondary structure

TGCATAGATTATCTTTCTATTCTATGTTGCAGATTCTTCATTTGCCGCTCTGCTGAATGATCATATTGCGGGTGAAGCAAACGAAGGATCTGCAATATAAACCAGAAAAGGTAATCGTAT
---------------------CTATGTTGCAGATTCTTCATT 	1
----------------------TATGTTGCAGATTCTTCATT 	2
--------------------------------------------------------------------------------ACGAAGGATCTGCAATATAAA 	5
---------------------------------------------------------------------------------CGAAGGATCTGCAATATAAAC 	1
---------------------------------------------------------------------------------CGAAGGATCTGCAATATAAA 	2
------------------------------------------------------------------------------------AGGATCTGCAATATAAACCA 	1


Overlaps with: MNEST039565 MNEST039566
Overlaps with miRBase pre-miRNAs: ppt-MIR902k
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Physcomitrella patens GSM313214 ACGAAGGATCTGCAATATAAA TATGTTGCAGATTCTTCATTT down 3 0


Secondary structure

TGCATAGATTATCTTTCTATTCTATGTTGCAGATTCTTCATTTGCCGCTCTGCTGAATGATCATATTGCGGGTGAAGCAAACGAAGGATCTGCAATATAAACCAGAAAAGGTAATCGTAT
------------------ATTCTATGTTGCAGATTCTTC 	1
---------------------CTATGTTGCAGATTCTTCATTT 	1
---------------------CTATGTTGCAGATTCTTCAT 	2
---------------------CTATGTTGCAGATTCTTCATT 	7
----------------------TATGTTGCAGATTCTTCATT 	5
----------------------TATGTTGCAGATTCTTCAT 	1
----------------------TATGTTGCAGATTCTTCATTT 	7
-----------------------ATGTTGCAGATTCTTCATTT 	1
--------------------------------------------------------------------------------ACGAAGGATCTGCAATATAAAC 	1
--------------------------------------------------------------------------------ACGAAGGATCTGCAATATAAA 	45
--------------------------------------------------------------------------------ACGAAGGATCTGCAATATA 	1
---------------------------------------------------------------------------------CGAAGGATCTGCAATATAAAC 	4
---------------------------------------------------------------------------------CGAAGGATCTGCAATATAAA 	4
----------------------------------------------------------------------------------GAAGGATCTGCAATATAAA 	1
------------------------------------------------------------------------------------AGGATCTGCAATATAAACCAGA 	2
------------------------------------------------------------------------------------AGGATCTGCAATATAAACCAGAAA 	2


Overlaps with: MNEST039565 MNEST039566
Overlaps with miRBase pre-miRNAs: ppt-MIR902k
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Physcomitrella patens GSM313217 ACGAAGGATCTGCAATATAAA TATGTTGCAGATTCTTCATTT down 3 0


Secondary structure

TGCATAGATTATCTTTCTATTCTATGTTGCAGATTCTTCATTTGCCGCTCTGCTGAATGATCATATTGCGGGTGAAGCAAACGAAGGATCTGCAATATAAACCAGAAAAGGTAATCGTAT
---------------------CTATGTTGCAGATTCTTCATT 	3
----------------------TATGTTGCAGATTCTTCATT 	1
----------------------TATGTTGCAGATTCTTCATTT 	2
--------------------------------------------------------------------------------ACGAAGGATCTGCAATATAAA 	10
---------------------------------------------------------------------------------CGAAGGATCTGCAATATAAAC 	2
---------------------------------------------------------------------------------CGAAGGATCTGCAATATAAA 	1
------------------------------------------------------------------------------------AGGATCTGCAATATAAACCAG 	2


Overlaps with: MNEST039565 MNEST039566
Overlaps with miRBase pre-miRNAs: ppt-MIR902k
HuntMi prediction: true miRNA