miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: ACGAAGGTCTGCATCATAGC

selected species: Physcomitrella patens



13 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM115097 ACGAAGGTCTGCATCATAGC TATGATGCAGATTCTTCACCT down 4 1


Secondary structure

CATCCGCTACGATATGATGCAGATTCTTCACCTGTGTGATACTCTTGAGGTATAACAGACGAAGGTCTGCATCATAGCCAAGCGAAC
------------TATGATGCAGATTCTTCACCT 	3
------------TATGATGCAGATTCTTCACC 	3
------------TATGATGCAGATTCTTCAC 	1
--------------------------------------------------------AGACGAAGGTCTGCATCATAG 	1
---------------------------------------------------------GACGAAGGTCTGCATCATAGC 	2
----------------------------------------------------------ACGAAGGTCTGCATCATAGC 	56
----------------------------------------------------------ACGAAGGTCTGCATCATAG 	1
-----------------------------------------------------------CGAAGGTCTGCATCATAGC 	19


Overlaps with: MNEST039545 MNEST039546
Overlaps with miRBase pre-miRNAs: ppt-MIR902a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM313212 ACGAAGGTCTGCATCATAGC TATGATGCAGATTCTTCACCT down 4 1


Secondary structure

CATCCGCTACGATATGATGCAGATTCTTCACCTGTGTGATACTCTTGAGGTATAACAGACGAAGGTCTGCATCATAGCCAAGCGAAC
------------TATGATGCAGATTCTTCAC 	16
------------TATGATGCAGATTCTTCACC 	7
------------TATGATGCAGATTCTTCACCT 	6
-------------ATGATGCAGATTCTTCACC 	1
--------------------------------------------------------AGACGAAGGTCTGCATCATAG 	3
--------------------------------------------------------AGACGAAGGTCTGCATCATA 	1
---------------------------------------------------------GACGAAGGTCTGCATCATAGC 	4
---------------------------------------------------------GACGAAGGTCTGCATCATAG 	1
----------------------------------------------------------ACGAAGGTCTGCATCATAGC 	98
----------------------------------------------------------ACGAAGGTCTGCATCATAG 	5
-----------------------------------------------------------CGAAGGTCTGCATCATAGC 	4


Overlaps with: MNEST039545 MNEST039546
Overlaps with miRBase pre-miRNAs: ppt-MIR902a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM115095 ACGAAGGTCTGCATCATAGC TATGATGCAGATTCTTCACCT down 4 1


Secondary structure

CATCCGCTACGATATGATGCAGATTCTTCACCTGTGTGATACTCTTGAGGTATAACAGACGAAGGTCTGCATCATAGCCAAGCGAAC
------------TATGATGCAGATTCTTCAC 	3
--------------------------------------------------------AGACGAAGGTCTGCATCATAG 	1
---------------------------------------------------------GACGAAGGTCTGCATCATAGC 	2
----------------------------------------------------------ACGAAGGTCTGCATCATAGCC 	3
----------------------------------------------------------ACGAAGGTCTGCATCATAGC 	95
----------------------------------------------------------ACGAAGGTCTGCATCATAG 	3
-----------------------------------------------------------CGAAGGTCTGCATCATAGC 	9


Overlaps with: MNEST039545 MNEST039546
Overlaps with miRBase pre-miRNAs: ppt-MIR902a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Physcomitrella patens GSM313213 ACGAAGGTCTGCATCATAGC TATGATGCAGATTCTTCACCT down 4 1


Secondary structure

CATCCGCTACGATATGATGCAGATTCTTCACCTGTGTGATACTCTTGAGGTATAACAGACGAAGGTCTGCATCATAGCCAAGCGAAC
------------TATGATGCAGATTCTTCAC 	10
------------TATGATGCAGATTCTTCACC 	6
------------TATGATGCAGATTCTTCACCT 	3
--------------------------------------------------------AGACGAAGGTCTGCATCATA 	5
--------------------------------------------------------AGACGAAGGTCTGCATCAT 	1
--------------------------------------------------------AGACGAAGGTCTGCATCATAGC 	1
--------------------------------------------------------AGACGAAGGTCTGCATCATAG 	2
---------------------------------------------------------GACGAAGGTCTGCATCATAGC 	2
---------------------------------------------------------GACGAAGGTCTGCATCATAG 	1
----------------------------------------------------------ACGAAGGTCTGCATCATAGC 	116
----------------------------------------------------------ACGAAGGTCTGCATCATAGCC 	5
----------------------------------------------------------ACGAAGGTCTGCATCATAG 	4
----------------------------------------------------------ACGAAGGTCTGCATCATAGCCAAG 	1
-----------------------------------------------------------CGAAGGTCTGCATCATAGCCA 	1
-----------------------------------------------------------CGAAGGTCTGCATCATAGC 	3


Overlaps with: MNEST039545 MNEST039546
Overlaps with miRBase pre-miRNAs: ppt-MIR902a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Physcomitrella patens GSM313215 ACGAAGGTCTGCATCATAGC TATGATGCAGATTCTTCACCT down 4 1


Secondary structure

CATCCGCTACGATATGATGCAGATTCTTCACCTGTGTGATACTCTTGAGGTATAACAGACGAAGGTCTGCATCATAGCCAAGCGAAC
------------TATGATGCAGATTCTTCAC 	3
------------TATGATGCAGATTCTTCACC 	5
------------TATGATGCAGATTCTTCACCTG 	1
------------TATGATGCAGATTCTTCACCT 	2
----------------------------------------------------TAACAGACGAAGGTCTGCATCATAGC 	1
--------------------------------------------------------AGACGAAGGTCTGCATCATAG 	9
---------------------------------------------------------GACGAAGGTCTGCATCATAGC 	17
----------------------------------------------------------ACGAAGGTCTGCATCATAGCC 	41
----------------------------------------------------------ACGAAGGTCTGCATCATAGCCA 	1
----------------------------------------------------------ACGAAGGTCTGCATCATAG 	1
----------------------------------------------------------ACGAAGGTCTGCATCATAGC 	504
-----------------------------------------------------------CGAAGGTCTGCATCATAGC 	9
-----------------------------------------------------------CGAAGGTCTGCATCATAGCC 	3
-----------------------------------------------------------CGAAGGTCTGCATCATAGCCA 	1
--------------------------------------------------------------AGGTCTGCATCATAGCCAAG 	6


Overlaps with: MNEST039545 MNEST039546
Overlaps with miRBase pre-miRNAs: ppt-MIR902a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Physcomitrella patens GSM313215 ACGAAGGTCTGCATCATAGC TATGATGCAGATTCTTCATCT down 2 1


Secondary structure

GACTTGTTTCCTTCCTCTAGCCTATGATGCAGATTCTTCATCTGTTTGTTATCGTTCTCATGGTGTACATAACAGACGAAGGTCTGCATCATAGCCAAGAGGAAGCAAATCTTA
---------------TCTAGCCTATGATGCAGATTCT 	1
-----------------TAGCCTATGATGCAGATTCTT 	4
-----------------TAGCCTATGATGCAGATTCT 	1
-----------------TAGCCTATGATGCAGATTCTTC 	111
------------------AGCCTATGATGCAGATTCTTC 	1
-------------------GCCTATGATGCAGATTCTTC 	1
---------------------CTATGATGCAGATTCTTCATCTG 	2
----------------------TATGATGCAGATTCTTCATCT 	92
----------------------TATGATGCAGATTCTTCAT 	13
----------------------TATGATGCAGATTCTTCATCTG 	144
----------------------TATGATGCAGATTCTTCATC 	68
-----------------------ATGATGCAGATTCTTCATCTG 	2
-----------------------ATGATGCAGATTCTTCATCT 	1
-----------------------ATGATGCAGATTCTTCATC 	3
-----------------------ATGATGCAGATTCTTCATCTGT 	1
------------------------TGATGCAGATTCTTCATCTG 	1
------------------------TGATGCAGATTCTTCATCTGT 	1
---------------------------------------------------------------------TAACAGACGAAGGTCTGCATCATAGC 	1
-------------------------------------------------------------------------AGACGAAGGTCTGCATCATAG 	9
--------------------------------------------------------------------------GACGAAGGTCTGCATCATAGC 	17
---------------------------------------------------------------------------ACGAAGGTCTGCATCATAGCC 	41
---------------------------------------------------------------------------ACGAAGGTCTGCATCATAGCCA 	1
---------------------------------------------------------------------------ACGAAGGTCTGCATCATAG 	1
---------------------------------------------------------------------------ACGAAGGTCTGCATCATAGC 	504
----------------------------------------------------------------------------CGAAGGTCTGCATCATAGC 	9
----------------------------------------------------------------------------CGAAGGTCTGCATCATAGCC 	3
----------------------------------------------------------------------------CGAAGGTCTGCATCATAGCCA 	1
-------------------------------------------------------------------------------AGGTCTGCATCATAGCCAAGA 	1
-------------------------------------------------------------------------------AGGTCTGCATCATAGCCAAG 	6


Overlaps with: MNEST006971
Overlaps with miRBase pre-miRNAs: ppt-MIR902b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Physcomitrella patens GSM115096 ACGAAGGTCTGCATCATAGC TATGATGCAGATTCTTCACCT down 4 1


Secondary structure

CATCCGCTACGATATGATGCAGATTCTTCACCTGTGTGATACTCTTGAGGTATAACAGACGAAGGTCTGCATCATAGCCAAGCGAAC
------------TATGATGCAGATTCTTCACCT 	1
------------TATGATGCAGATTCTTCACC 	9
------------TATGATGCAGATTCTTCAC 	23
---------------------------------------------------------GACGAAGGTCTGCATCATAGC 	5
----------------------------------------------------------ACGAAGGTCTGCATCATAGCC 	3
----------------------------------------------------------ACGAAGGTCTGCATCATAGC 	222
----------------------------------------------------------ACGAAGGTCTGCATCATAG 	7
-----------------------------------------------------------CGAAGGTCTGCATCATAGCC 	3
-----------------------------------------------------------CGAAGGTCTGCATCATAGC 	21


Overlaps with: MNEST039545 MNEST039546
Overlaps with miRBase pre-miRNAs: ppt-MIR902a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Physcomitrella patens GSM313216 ACGAAGGTCTGCATCATAGC TATGATGCAGATTCTTCACCT down 4 1


Secondary structure

CATCCGCTACGATATGATGCAGATTCTTCACCTGTGTGATACTCTTGAGGTATAACAGACGAAGGTCTGCATCATAGCCAAGCGAAC
------------TATGATGCAGATTCTTCAC 	9
------------TATGATGCAGATTCTTCACC 	2
-------------------------------------------------------CAGACGAAGGTCTGCATCATAGC 	2
-------------------------------------------------------CAGACGAAGGTCTGCATCATA 	2
--------------------------------------------------------AGACGAAGGTCTGCATCATAGC 	4
--------------------------------------------------------AGACGAAGGTCTGCATCATAG 	8
--------------------------------------------------------AGACGAAGGTCTGCATCATA 	1
---------------------------------------------------------GACGAAGGTCTGCATCATAGC 	25
----------------------------------------------------------ACGAAGGTCTGCATCATAGCCA 	1
----------------------------------------------------------ACGAAGGTCTGCATCATAGC 	766
----------------------------------------------------------ACGAAGGTCTGCATCATAGCC 	13
----------------------------------------------------------ACGAAGGTCTGCATCATAG 	22
-----------------------------------------------------------CGAAGGTCTGCATCATAGC 	15
-----------------------------------------------------------CGAAGGTCTGCATCATAGCCA 	3
-----------------------------------------------------------CGAAGGTCTGCATCATAGCC 	2
-------------------------------------------------------------AAGGTCTGCATCATAGCCAAG 	1
--------------------------------------------------------------AGGTCTGCATCATAGCCAAG 	1


Overlaps with: MNEST039545 MNEST039546
Overlaps with miRBase pre-miRNAs: ppt-MIR902a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Physcomitrella patens GSM313216 ACGAAGGTCTGCATCATAGC TATGATGCAGATTCTTCATCT down 2 1


Secondary structure

GACTTGTTTCCTTCCTCTAGCCTATGATGCAGATTCTTCATCTGTTTGTTATCGTTCTCATGGTGTACATAACAGACGAAGGTCTGCATCATAGCCAAGAGGAAGCAAATCTTA
------------TCCTCTAGCCTATGATGCAGA 	1
-----------------TAGCCTATGATGCAGATTCTTC 	25
-----------------TAGCCTATGATGCAGATTCTT 	1
-----------------TAGCCTATGATGCAGATTCTTCATCT 	1
---------------------CTATGATGCAGATTCTTCATC 	1
----------------------TATGATGCAGATTCTTCAT 	63
----------------------TATGATGCAGATTCTTCATCTG 	3
----------------------TATGATGCAGATTCTTCATCT 	43
----------------------TATGATGCAGATTCTTCATC 	52
-----------------------ATGATGCAGATTCTTCATCT 	1
-----------------------ATGATGCAGATTCTTCATC 	2
------------------------TGATGCAGATTCTTCATCTGT 	1
------------------------------------------------------------------------CAGACGAAGGTCTGCATCATAGC 	2
------------------------------------------------------------------------CAGACGAAGGTCTGCATCATA 	2
-------------------------------------------------------------------------AGACGAAGGTCTGCATCATAGC 	4
-------------------------------------------------------------------------AGACGAAGGTCTGCATCATAG 	8
-------------------------------------------------------------------------AGACGAAGGTCTGCATCATA 	1
--------------------------------------------------------------------------GACGAAGGTCTGCATCATAGC 	25
---------------------------------------------------------------------------ACGAAGGTCTGCATCATAGCCA 	1
---------------------------------------------------------------------------ACGAAGGTCTGCATCATAGC 	766
---------------------------------------------------------------------------ACGAAGGTCTGCATCATAGCC 	13
---------------------------------------------------------------------------ACGAAGGTCTGCATCATAG 	22
----------------------------------------------------------------------------CGAAGGTCTGCATCATAGC 	15
----------------------------------------------------------------------------CGAAGGTCTGCATCATAGCCA 	3
----------------------------------------------------------------------------CGAAGGTCTGCATCATAGCC 	2
------------------------------------------------------------------------------AAGGTCTGCATCATAGCCAAG 	1
-------------------------------------------------------------------------------AGGTCTGCATCATAGCCAAGA 	2
-------------------------------------------------------------------------------AGGTCTGCATCATAGCCAAG 	1


Overlaps with: MNEST006971
Overlaps with miRBase pre-miRNAs: ppt-MIR902b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Physcomitrella patens GSM313214 ACGAAGGTCTGCATCATAGC TATGATGCAGATTCTTCACCT down 4 1


Secondary structure

CATCCGCTACGATATGATGCAGATTCTTCACCTGTGTGATACTCTTGAGGTATAACAGACGAAGGTCTGCATCATAGCCAAGCGAAC
------------TATGATGCAGATTCTTCAC 	20
------------TATGATGCAGATTCTTCACC 	20
------------TATGATGCAGATTCTTCACCT 	1
--------------------------------------------------------AGACGAAGGTCTGCATCATAG 	4
--------------------------------------------------------AGACGAAGGTCTGCATCATA 	2
---------------------------------------------------------GACGAAGGTCTGCATCATAGC 	25
----------------------------------------------------------ACGAAGGTCTGCATCATAGCC 	45
----------------------------------------------------------ACGAAGGTCTGCATCATAGCCA 	1
----------------------------------------------------------ACGAAGGTCTGCATCATAG 	9
----------------------------------------------------------ACGAAGGTCTGCATCATAGC 	871
-----------------------------------------------------------CGAAGGTCTGCATCATAGCC 	7
-----------------------------------------------------------CGAAGGTCTGCATCATAGC 	41
-------------------------------------------------------------AAGGTCTGCATCATAGCCAAG 	1
--------------------------------------------------------------AGGTCTGCATCATAGCCAAG 	8


Overlaps with: MNEST039545 MNEST039546
Overlaps with miRBase pre-miRNAs: ppt-MIR902a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Physcomitrella patens GSM313214 ACGAAGGTCTGCATCATAGC TATGATGCAGATTCTTCATCT down 2 1


Secondary structure

GACTTGTTTCCTTCCTCTAGCCTATGATGCAGATTCTTCATCTGTTTGTTATCGTTCTCATGGTGTACATAACAGACGAAGGTCTGCATCATAGCCAAGAGGAAGCAAATCTTA
-----------------TAGCCTATGATGCAGATTCTTC 	158
-----------------TAGCCTATGATGCAGATTCTT 	2
-----------------TAGCCTATGATGCAGATTCTTCA 	1
-----------------TAGCCTATGATGCAGATTC 	1
------------------AGCCTATGATGCAGATTCTTC 	4
------------------AGCCTATGATGCAGATTCTTCA 	3
-------------------GCCTATGATGCAGATTCTTC 	1
---------------------CTATGATGCAGATTCTTCATC 	1
---------------------CTATGATGCAGATTCTTCAT 	1
----------------------TATGATGCAGATTCTTCATCT 	113
----------------------TATGATGCAGATTCTTCAT 	45
----------------------TATGATGCAGATTCTTCATC 	344
----------------------TATGATGCAGATTCTTCATCTG 	134
-----------------------ATGATGCAGATTCTTCATCT 	4
-----------------------ATGATGCAGATTCTTCATCTG 	7
-----------------------ATGATGCAGATTCTTCATC 	11
-----------------------ATGATGCAGATTCTTCATCTGT 	1
-------------------------------------------------------------------------AGACGAAGGTCTGCATCATAG 	4
-------------------------------------------------------------------------AGACGAAGGTCTGCATCATA 	2
--------------------------------------------------------------------------GACGAAGGTCTGCATCATAGC 	25
---------------------------------------------------------------------------ACGAAGGTCTGCATCATAGCC 	45
---------------------------------------------------------------------------ACGAAGGTCTGCATCATAGCCA 	1
---------------------------------------------------------------------------ACGAAGGTCTGCATCATAG 	9
---------------------------------------------------------------------------ACGAAGGTCTGCATCATAGC 	871
----------------------------------------------------------------------------CGAAGGTCTGCATCATAGCC 	7
----------------------------------------------------------------------------CGAAGGTCTGCATCATAGC 	41
------------------------------------------------------------------------------AAGGTCTGCATCATAGCCAAG 	1
-------------------------------------------------------------------------------AGGTCTGCATCATAGCCAAGA 	2
-------------------------------------------------------------------------------AGGTCTGCATCATAGCCAAG 	8


Overlaps with: MNEST006971
Overlaps with miRBase pre-miRNAs: ppt-MIR902b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Physcomitrella patens GSM313217 ACGAAGGTCTGCATCATAGC TATGATGCAGATTCTTCACCT down 4 1


Secondary structure

CATCCGCTACGATATGATGCAGATTCTTCACCTGTGTGATACTCTTGAGGTATAACAGACGAAGGTCTGCATCATAGCCAAGCGAAC
------------TATGATGCAGATTCTTCAC 	11
------------TATGATGCAGATTCTTCACC 	1
-------------------------------------------------------CAGACGAAGGTCTGCATCATAGC 	2
-------------------------------------------------------CAGACGAAGGTCTGCATCATA 	1
--------------------------------------------------------AGACGAAGGTCTGCATCATAG 	9
--------------------------------------------------------AGACGAAGGTCTGCATCATAGC 	3
--------------------------------------------------------AGACGAAGGTCTGCATCATA 	2
---------------------------------------------------------GACGAAGGTCTGCATCATAGC 	25
----------------------------------------------------------ACGAAGGTCTGCATCATAGC 	732
----------------------------------------------------------ACGAAGGTCTGCATCATAG 	20
----------------------------------------------------------ACGAAGGTCTGCATCATAGCC 	9
-----------------------------------------------------------CGAAGGTCTGCATCATAGC 	9
-----------------------------------------------------------CGAAGGTCTGCATCATAGCCA 	3
-----------------------------------------------------------CGAAGGTCTGCATCATAGCC 	1
-------------------------------------------------------------AAGGTCTGCATCATAGCCAAG 	1
-------------------------------------------------------------AAGGTCTGCATCATAGCCAA 	1
--------------------------------------------------------------AGGTCTGCATCATAGCCAAG 	3


Overlaps with: MNEST039545 MNEST039546
Overlaps with miRBase pre-miRNAs: ppt-MIR902a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Physcomitrella patens GSM313217 ACGAAGGTCTGCATCATAGC TATGATGCAGATTCTTCATCT down 2 1


Secondary structure

GACTTGTTTCCTTCCTCTAGCCTATGATGCAGATTCTTCATCTGTTTGTTATCGTTCTCATGGTGTACATAACAGACGAAGGTCTGCATCATAGCCAAGAGGAAGCAAATCTTA
-----------------TAGCCTATGATGCAGATTCTT 	2
-----------------TAGCCTATGATGCAGATTCTTC 	20
-----------------TAGCCTATGATGCAGATTCT 	1
------------------AGCCTATGATGCAGATTCTTC 	1
----------------------TATGATGCAGATTCTTCAT 	83
----------------------TATGATGCAGATTCTTCATCTG 	9
----------------------TATGATGCAGATTCTTCATCT 	55
----------------------TATGATGCAGATTCTTCATC 	55
-----------------------ATGATGCAGATTCTTCATCTGT 	1
------------------------------------------------------------------------CAGACGAAGGTCTGCATCATAGC 	2
------------------------------------------------------------------------CAGACGAAGGTCTGCATCATA 	1
-------------------------------------------------------------------------AGACGAAGGTCTGCATCATAG 	9
-------------------------------------------------------------------------AGACGAAGGTCTGCATCATAGC 	3
-------------------------------------------------------------------------AGACGAAGGTCTGCATCATA 	2
--------------------------------------------------------------------------GACGAAGGTCTGCATCATAGC 	25
---------------------------------------------------------------------------ACGAAGGTCTGCATCATAGC 	732
---------------------------------------------------------------------------ACGAAGGTCTGCATCATAG 	20
---------------------------------------------------------------------------ACGAAGGTCTGCATCATAGCC 	9
----------------------------------------------------------------------------CGAAGGTCTGCATCATAGC 	9
----------------------------------------------------------------------------CGAAGGTCTGCATCATAGCCA 	3
----------------------------------------------------------------------------CGAAGGTCTGCATCATAGCC 	1
------------------------------------------------------------------------------AAGGTCTGCATCATAGCCAAG 	1
------------------------------------------------------------------------------AAGGTCTGCATCATAGCCAA 	1
-------------------------------------------------------------------------------AGGTCTGCATCATAGCCAAGA 	2
-------------------------------------------------------------------------------AGGTCTGCATCATAGCCAAG 	3


Overlaps with: MNEST006971
Overlaps with miRBase pre-miRNAs: ppt-MIR902b
HuntMi prediction: true miRNA