miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: ACGAAGGTCTGCATCATAGT

selected species: Physcomitrella patens



18 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM115097 ACGAAGGTCTGCATCATAGT GTATGATGCAGATTCTTCATCT down 1 2


Secondary structure

ATGCTCATTTCCTCCTTCTAGCGTATGATGCAGATTCTTCATCTGTTGAACTGAATTTTTCTTAGTGATGCAGACGAAGGTCTGCATCATAGTCAAGGGGGAGGAAATATAT
-----------------------TATGATGCAGATTCTTCATCTG 	2
-----------------------TATGATGCAGATTCTTCATC 	4
-----------------------TATGATGCAGATTCTTCATCT 	83
-----------------------TATGATGCAGATTCTTCAT 	5
------------------------ATGATGCAGATTCTTCATCT 	1
-----------------------------------------------------------------------AGACGAAGGTCTGCATCATAG 	1
-------------------------------------------------------------------------ACGAAGGTCTGCATCATAGT 	115
-------------------------------------------------------------------------ACGAAGGTCTGCATCATAG 	1
--------------------------------------------------------------------------CGAAGGTCTGCATCATAGTC 	1
--------------------------------------------------------------------------CGAAGGTCTGCATCATAGT 	24


Overlaps with: MNEST039549 MNEST039550
Overlaps with miRBase pre-miRNAs: ppt-MIR902c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM115097 ACGAAGGTCTGCATCATAGT TATGATGCAGATTCTTCATCT down 2 1


Secondary structure

CTTCCGCTAGTCTATGATGCAGATTCTTCATCTGTTTAGCTGAATCTGCGTCAGTGTTTCAGTGTTACAGACGAAGGTCTGCATCATAGTCAAGAGGAA
-------TAGTCTATGATGCAGATTCTTC 	2
------------TATGATGCAGATTCTTCATCTG 	2
------------TATGATGCAGATTCTTCATC 	4
------------TATGATGCAGATTCTTCATCT 	83
------------TATGATGCAGATTCTTCAT 	5
-------------ATGATGCAGATTCTTCATCT 	1
--------------------------------------------------------------------AGACGAAGGTCTGCATCATAG 	1
----------------------------------------------------------------------ACGAAGGTCTGCATCATAGT 	115
----------------------------------------------------------------------ACGAAGGTCTGCATCATAG 	1
-----------------------------------------------------------------------CGAAGGTCTGCATCATAGTC 	1
-----------------------------------------------------------------------CGAAGGTCTGCATCATAGT 	24


Overlaps with: MNEST006973 MNEST039557 MNEST039558
Overlaps with miRBase pre-miRNAs: ppt-MIR902g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM115097 ACGAAGGTCTGCATCATAGT TATGATGCAGATTCTTCATCT down 2 1


Secondary structure

GTCTCATTTCCTTCCGCTAGTCTATGATGCAGATTCTTCATCTGTTTCGTGTGATGCTTGTGCACGAGTCAGACGAAGGTCTGCATCATAGTCAAGAGGAAGCAAATATGA
-----------------TAGTCTATGATGCAGATTCTTC 	2
----------------------TATGATGCAGATTCTTCATCTG 	2
----------------------TATGATGCAGATTCTTCATC 	4
----------------------TATGATGCAGATTCTTCATCT 	83
----------------------TATGATGCAGATTCTTCAT 	5
-----------------------ATGATGCAGATTCTTCATCT 	1
----------------------------------------------------------------------AGACGAAGGTCTGCATCATAG 	1
------------------------------------------------------------------------ACGAAGGTCTGCATCATAGT 	115
------------------------------------------------------------------------ACGAAGGTCTGCATCATAG 	1
-------------------------------------------------------------------------CGAAGGTCTGCATCATAGTC 	1
-------------------------------------------------------------------------CGAAGGTCTGCATCATAGT 	24


Overlaps with: MNEST039553 MNEST039554
Overlaps with miRBase pre-miRNAs: ppt-MIR902e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Physcomitrella patens GSM313215 ACGAAGGTCTGCATCATAGT GTATGATGCAGATTCTTCATCT down 1 2


Secondary structure

ATGCTCATTTCCTCCTTCTAGCGTATGATGCAGATTCTTCATCTGTTGAACTGAATTTTTCTTAGTGATGCAGACGAAGGTCTGCATCATAGTCAAGGGGGAGGAAATATAT
-----------------------TATGATGCAGATTCTTCATCT 	92
-----------------------TATGATGCAGATTCTTCAT 	13
-----------------------TATGATGCAGATTCTTCATCTG 	144
-----------------------TATGATGCAGATTCTTCATC 	68
------------------------ATGATGCAGATTCTTCATCTG 	2
------------------------ATGATGCAGATTCTTCATCT 	1
------------------------ATGATGCAGATTCTTCATC 	3
------------------------ATGATGCAGATTCTTCATCTGT 	1
-------------------------TGATGCAGATTCTTCATCTG 	1
-------------------------TGATGCAGATTCTTCATCTGT 	1
-----------------------------------------------------------------------AGACGAAGGTCTGCATCATAG 	9
------------------------------------------------------------------------GACGAAGGTCTGCATCATAGT 	1
-------------------------------------------------------------------------ACGAAGGTCTGCATCATAG 	1
-------------------------------------------------------------------------ACGAAGGTCTGCATCATAGTC 	3
-------------------------------------------------------------------------ACGAAGGTCTGCATCATAGT 	892
--------------------------------------------------------------------------CGAAGGTCTGCATCATAGT 	15


Overlaps with: MNEST039549 MNEST039550
Overlaps with miRBase pre-miRNAs: ppt-MIR902c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Physcomitrella patens GSM313215 ACGAAGGTCTGCATCATAGT TATGATGCAGATTCTTCATCT down 2 1


Secondary structure

CTTCCGCTAGTCTATGATGCAGATTCTTCATCTGTTTAGCTGAATCTGCGTCAGTGTTTCAGTGTTACAGACGAAGGTCTGCATCATAGTCAAGAGGAA
-------TAGTCTATGATGCAGATTCTTC 	10
-------TAGTCTATGATGCAGATTCTT 	1
-----------CTATGATGCAGATTCTTCATCTG 	2
------------TATGATGCAGATTCTTCATCT 	92
------------TATGATGCAGATTCTTCAT 	13
------------TATGATGCAGATTCTTCATCTG 	144
------------TATGATGCAGATTCTTCATC 	68
-------------ATGATGCAGATTCTTCATCTG 	2
-------------ATGATGCAGATTCTTCATCT 	1
-------------ATGATGCAGATTCTTCATC 	3
-------------ATGATGCAGATTCTTCATCTGT 	1
--------------TGATGCAGATTCTTCATCTG 	1
--------------TGATGCAGATTCTTCATCTGT 	1
--------------------------------------------------------------------AGACGAAGGTCTGCATCATAG 	9
---------------------------------------------------------------------GACGAAGGTCTGCATCATAGT 	1
----------------------------------------------------------------------ACGAAGGTCTGCATCATAG 	1
----------------------------------------------------------------------ACGAAGGTCTGCATCATAGTC 	3
----------------------------------------------------------------------ACGAAGGTCTGCATCATAGT 	892
-----------------------------------------------------------------------CGAAGGTCTGCATCATAGT 	15


Overlaps with: MNEST006973 MNEST039557 MNEST039558
Overlaps with miRBase pre-miRNAs: ppt-MIR902g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Physcomitrella patens GSM313215 ACGAAGGTCTGCATCATAGT TATGATGCAGATTCTTCATCT down 2 1


Secondary structure

GTCTCATTTCCTTCCGCTAGTCTATGATGCAGATTCTTCATCTGTTTCGTGTGATGCTTGTGCACGAGTCAGACGAAGGTCTGCATCATAGTCAAGAGGAAGCAAATATGA
-----------------TAGTCTATGATGCAGATTCTTC 	10
-----------------TAGTCTATGATGCAGATTCTT 	1
---------------------CTATGATGCAGATTCTTCATCTG 	2
----------------------TATGATGCAGATTCTTCATCT 	92
----------------------TATGATGCAGATTCTTCAT 	13
----------------------TATGATGCAGATTCTTCATCTG 	144
----------------------TATGATGCAGATTCTTCATC 	68
-----------------------ATGATGCAGATTCTTCATCTG 	2
-----------------------ATGATGCAGATTCTTCATCT 	1
-----------------------ATGATGCAGATTCTTCATC 	3
-----------------------ATGATGCAGATTCTTCATCTGT 	1
------------------------TGATGCAGATTCTTCATCTG 	1
------------------------TGATGCAGATTCTTCATCTGT 	1
-------------------------------------------GTTTCGTGTGATGCTTGTGCACGAGT 	1
----------------------------------------------------------------------AGACGAAGGTCTGCATCATAG 	9
-----------------------------------------------------------------------GACGAAGGTCTGCATCATAGT 	1
------------------------------------------------------------------------ACGAAGGTCTGCATCATAG 	1
------------------------------------------------------------------------ACGAAGGTCTGCATCATAGTC 	3
------------------------------------------------------------------------ACGAAGGTCTGCATCATAGT 	892
-------------------------------------------------------------------------CGAAGGTCTGCATCATAGT 	15


Overlaps with: MNEST039553 MNEST039554
Overlaps with miRBase pre-miRNAs: ppt-MIR902e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Physcomitrella patens GSM115096 ACGAAGGTCTGCATCATAGT GTATGATGCAGATTCTTCATCT down 1 2


Secondary structure

ATGCTCATTTCCTCCTTCTAGCGTATGATGCAGATTCTTCATCTGTTGAACTGAATTTTTCTTAGTGATGCAGACGAAGGTCTGCATCATAGTCAAGGGGGAGGAAATATAT
-----------------------TATGATGCAGATTCTTCATCTG 	43
-----------------------TATGATGCAGATTCTTCATCT 	356
-----------------------TATGATGCAGATTCTTCATC 	98
-----------------------TATGATGCAGATTCTTCAT 	88
------------------------ATGATGCAGATTCTTCATCT 	4
------------------------ATGATGCAGATTCTTCATC 	1
------------------------------------------------------------------------GACGAAGGTCTGCATCATAGT 	2
------------------------------------------------------------------------GACGAAGGTCTGCATCATAGTC 	1
-------------------------------------------------------------------------ACGAAGGTCTGCATCATAGT 	981
-------------------------------------------------------------------------ACGAAGGTCTGCATCATAGTC 	4
-------------------------------------------------------------------------ACGAAGGTCTGCATCATAG 	7
--------------------------------------------------------------------------CGAAGGTCTGCATCATAGT 	83
--------------------------------------------------------------------------CGAAGGTCTGCATCATAGTC 	1
-----------------------------------------------------------------------------AGGTCTGCATCATAGTCAAG 	1


Overlaps with: MNEST039549 MNEST039550
Overlaps with miRBase pre-miRNAs: ppt-MIR902c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Physcomitrella patens GSM115096 ACGAAGGTCTGCATCATAGT TATGATGCAGATTCTTCATCT down 2 1


Secondary structure

CTTCCGCTAGTCTATGATGCAGATTCTTCATCTGTTTAGCTGAATCTGCGTCAGTGTTTCAGTGTTACAGACGAAGGTCTGCATCATAGTCAAGAGGAA
-------TAGTCTATGATGCAGATTCTTC 	4
-------TAGTCTATGATGCAGATTCTTCA 	1
-----------CTATGATGCAGATTCTTCATCT 	1
------------TATGATGCAGATTCTTCATCTG 	43
------------TATGATGCAGATTCTTCATCT 	356
------------TATGATGCAGATTCTTCATC 	98
------------TATGATGCAGATTCTTCAT 	88
-------------ATGATGCAGATTCTTCATCT 	4
-------------ATGATGCAGATTCTTCATC 	1
---------------------------------------------------------------------GACGAAGGTCTGCATCATAGT 	2
---------------------------------------------------------------------GACGAAGGTCTGCATCATAGTC 	1
----------------------------------------------------------------------ACGAAGGTCTGCATCATAGT 	981
----------------------------------------------------------------------ACGAAGGTCTGCATCATAGTC 	4
----------------------------------------------------------------------ACGAAGGTCTGCATCATAG 	7
-----------------------------------------------------------------------CGAAGGTCTGCATCATAGT 	83
-----------------------------------------------------------------------CGAAGGTCTGCATCATAGTC 	1
--------------------------------------------------------------------------AGGTCTGCATCATAGTCAAG 	1


Overlaps with: MNEST006973 MNEST039557 MNEST039558
Overlaps with miRBase pre-miRNAs: ppt-MIR902g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Physcomitrella patens GSM115096 ACGAAGGTCTGCATCATAGT TATGATGCAGATTCTTCATCT down 2 1


Secondary structure

GTCTCATTTCCTTCCGCTAGTCTATGATGCAGATTCTTCATCTGTTTCGTGTGATGCTTGTGCACGAGTCAGACGAAGGTCTGCATCATAGTCAAGAGGAAGCAAATATGA
-----------------TAGTCTATGATGCAGATTCTTC 	4
-----------------TAGTCTATGATGCAGATTCTTCA 	1
---------------------CTATGATGCAGATTCTTCATCT 	1
----------------------TATGATGCAGATTCTTCATCTG 	43
----------------------TATGATGCAGATTCTTCATCT 	356
----------------------TATGATGCAGATTCTTCATC 	98
----------------------TATGATGCAGATTCTTCAT 	88
-----------------------ATGATGCAGATTCTTCATCT 	4
-----------------------ATGATGCAGATTCTTCATC 	1
-----------------------------------------------------------------------GACGAAGGTCTGCATCATAGT 	2
-----------------------------------------------------------------------GACGAAGGTCTGCATCATAGTC 	1
------------------------------------------------------------------------ACGAAGGTCTGCATCATAGT 	981
------------------------------------------------------------------------ACGAAGGTCTGCATCATAGTC 	4
------------------------------------------------------------------------ACGAAGGTCTGCATCATAG 	7
-------------------------------------------------------------------------CGAAGGTCTGCATCATAGT 	83
-------------------------------------------------------------------------CGAAGGTCTGCATCATAGTC 	1
----------------------------------------------------------------------------AGGTCTGCATCATAGTCAAG 	1


Overlaps with: MNEST039553 MNEST039554
Overlaps with miRBase pre-miRNAs: ppt-MIR902e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Physcomitrella patens GSM313216 ACGAAGGTCTGCATCATAGT GTATGATGCAGATTCTTCATCT down 1 2


Secondary structure

ATGCTCATTTCCTCCTTCTAGCGTATGATGCAGATTCTTCATCTGTTGAACTGAATTTTTCTTAGTGATGCAGACGAAGGTCTGCATCATAGTCAAGGGGGAGGAAATATAT
-----------------------TATGATGCAGATTCTTCAT 	63
-----------------------TATGATGCAGATTCTTCATCTG 	3
-----------------------TATGATGCAGATTCTTCATCT 	43
-----------------------TATGATGCAGATTCTTCATC 	52
------------------------ATGATGCAGATTCTTCATCT 	1
------------------------ATGATGCAGATTCTTCATC 	2
-------------------------TGATGCAGATTCTTCATCTGT 	1
----------------------------------------------------------------------CAGACGAAGGTCTGCATCATA 	2
-----------------------------------------------------------------------AGACGAAGGTCTGCATCATAG 	8
-----------------------------------------------------------------------AGACGAAGGTCTGCATCATA 	1
------------------------------------------------------------------------GACGAAGGTCTGCATCATAGT 	1
-------------------------------------------------------------------------ACGAAGGTCTGCATCATAGT 	354
-------------------------------------------------------------------------ACGAAGGTCTGCATCATAGTC 	2
-------------------------------------------------------------------------ACGAAGGTCTGCATCATAG 	22
--------------------------------------------------------------------------CGAAGGTCTGCATCATAGT 	5


Overlaps with: MNEST039549 MNEST039550
Overlaps with miRBase pre-miRNAs: ppt-MIR902c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Physcomitrella patens GSM313216 ACGAAGGTCTGCATCATAGT TATGATGCAGATTCTTCATCT down 2 1


Secondary structure

CTTCCGCTAGTCTATGATGCAGATTCTTCATCTGTTTAGCTGAATCTGCGTCAGTGTTTCAGTGTTACAGACGAAGGTCTGCATCATAGTCAAGAGGAA
--TCCGCTAGTCTATGATGCAGA 	1
-------TAGTCTATGATGCAGATTCTTC 	5
--------AGTCTATGATGCAGATTCTTCA 	1
-----------CTATGATGCAGATTCTTCATC 	1
------------TATGATGCAGATTCTTCAT 	63
------------TATGATGCAGATTCTTCATCTG 	3
------------TATGATGCAGATTCTTCATCT 	43
------------TATGATGCAGATTCTTCATC 	52
-------------ATGATGCAGATTCTTCATCT 	1
-------------ATGATGCAGATTCTTCATC 	2
--------------TGATGCAGATTCTTCATCTGT 	1
-------------------------------------------------------------------CAGACGAAGGTCTGCATCATA 	2
--------------------------------------------------------------------AGACGAAGGTCTGCATCATAG 	8
--------------------------------------------------------------------AGACGAAGGTCTGCATCATA 	1
---------------------------------------------------------------------GACGAAGGTCTGCATCATAGT 	1
----------------------------------------------------------------------ACGAAGGTCTGCATCATAGT 	354
----------------------------------------------------------------------ACGAAGGTCTGCATCATAGTC 	2
----------------------------------------------------------------------ACGAAGGTCTGCATCATAG 	22
-----------------------------------------------------------------------CGAAGGTCTGCATCATAGT 	5
-------------------------------------------------------------------------AAGGTCTGCATCATAGTCAAGA 	1


Overlaps with: MNEST006973 MNEST039557 MNEST039558
Overlaps with miRBase pre-miRNAs: ppt-MIR902g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Physcomitrella patens GSM313216 ACGAAGGTCTGCATCATAGT TATGATGCAGATTCTTCATCT down 2 1


Secondary structure

GTCTCATTTCCTTCCGCTAGTCTATGATGCAGATTCTTCATCTGTTTCGTGTGATGCTTGTGCACGAGTCAGACGAAGGTCTGCATCATAGTCAAGAGGAAGCAAATATGA
------------TCCGCTAGTCTATGATGCAGA 	1
-----------------TAGTCTATGATGCAGATTCTTC 	5
------------------AGTCTATGATGCAGATTCTTCA 	1
---------------------CTATGATGCAGATTCTTCATC 	1
----------------------TATGATGCAGATTCTTCAT 	63
----------------------TATGATGCAGATTCTTCATCTG 	3
----------------------TATGATGCAGATTCTTCATCT 	43
----------------------TATGATGCAGATTCTTCATC 	52
-----------------------ATGATGCAGATTCTTCATCT 	1
-----------------------ATGATGCAGATTCTTCATC 	2
------------------------TGATGCAGATTCTTCATCTGT 	1
---------------------------------------------------------------------CAGACGAAGGTCTGCATCATA 	2
----------------------------------------------------------------------AGACGAAGGTCTGCATCATAG 	8
----------------------------------------------------------------------AGACGAAGGTCTGCATCATA 	1
-----------------------------------------------------------------------GACGAAGGTCTGCATCATAGT 	1
------------------------------------------------------------------------ACGAAGGTCTGCATCATAGT 	354
------------------------------------------------------------------------ACGAAGGTCTGCATCATAGTC 	2
------------------------------------------------------------------------ACGAAGGTCTGCATCATAG 	22
-------------------------------------------------------------------------CGAAGGTCTGCATCATAGT 	5
---------------------------------------------------------------------------AAGGTCTGCATCATAGTCAAGA 	1


Overlaps with: MNEST039553 MNEST039554
Overlaps with miRBase pre-miRNAs: ppt-MIR902e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Physcomitrella patens GSM313214 ACGAAGGTCTGCATCATAGT GTATGATGCAGATTCTTCATCT down 1 2


Secondary structure

ATGCTCATTTCCTCCTTCTAGCGTATGATGCAGATTCTTCATCTGTTGAACTGAATTTTTCTTAGTGATGCAGACGAAGGTCTGCATCATAGTCAAGGGGGAGGAAATATAT
---------------------CGTATGATGCAGATTCTTCATC 	1
-----------------------TATGATGCAGATTCTTCATCT 	113
-----------------------TATGATGCAGATTCTTCAT 	45
-----------------------TATGATGCAGATTCTTCATC 	344
-----------------------TATGATGCAGATTCTTCATCTG 	134
------------------------ATGATGCAGATTCTTCATCT 	4
------------------------ATGATGCAGATTCTTCATCTG 	7
------------------------ATGATGCAGATTCTTCATC 	11
------------------------ATGATGCAGATTCTTCATCTGT 	1
-----------------------------------------------------------------------AGACGAAGGTCTGCATCATAGTC 	1
-----------------------------------------------------------------------AGACGAAGGTCTGCATCATAGT 	2
-----------------------------------------------------------------------AGACGAAGGTCTGCATCATAG 	4
-----------------------------------------------------------------------AGACGAAGGTCTGCATCATA 	2
------------------------------------------------------------------------GACGAAGGTCTGCATCATAGT 	3
-------------------------------------------------------------------------ACGAAGGTCTGCATCATAG 	9
-------------------------------------------------------------------------ACGAAGGTCTGCATCATAGT 	1787
-------------------------------------------------------------------------ACGAAGGTCTGCATCATAGTC 	9
--------------------------------------------------------------------------CGAAGGTCTGCATCATAGTCAAG 	1
--------------------------------------------------------------------------CGAAGGTCTGCATCATAGTC 	3
--------------------------------------------------------------------------CGAAGGTCTGCATCATAGT 	98
----------------------------------------------------------------------------AAGGTCTGCATCATAGTCAAG 	1


Overlaps with: MNEST039549 MNEST039550
Overlaps with miRBase pre-miRNAs: ppt-MIR902c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Physcomitrella patens GSM313214 ACGAAGGTCTGCATCATAGT TATGATGCAGATTCTTCATCT down 2 1


Secondary structure

CTTCCGCTAGTCTATGATGCAGATTCTTCATCTGTTTAGCTGAATCTGCGTCAGTGTTTCAGTGTTACAGACGAAGGTCTGCATCATAGTCAAGAGGAA
--TCCGCTAGTCTATGATGCAGA 	1
-------TAGTCTATGATGCAGATTCTTC 	26
--------AGTCTATGATGCAGATTCTTCA 	1
-----------CTATGATGCAGATTCTTCATC 	1
-----------CTATGATGCAGATTCTTCAT 	1
------------TATGATGCAGATTCTTCATCT 	113
------------TATGATGCAGATTCTTCAT 	45
------------TATGATGCAGATTCTTCATC 	344
------------TATGATGCAGATTCTTCATCTG 	134
-------------ATGATGCAGATTCTTCATCT 	4
-------------ATGATGCAGATTCTTCATCTG 	7
-------------ATGATGCAGATTCTTCATC 	11
-------------ATGATGCAGATTCTTCATCTGT 	1
--------------------------------------------------------------------AGACGAAGGTCTGCATCATAGTC 	1
--------------------------------------------------------------------AGACGAAGGTCTGCATCATAGT 	2
--------------------------------------------------------------------AGACGAAGGTCTGCATCATAG 	4
--------------------------------------------------------------------AGACGAAGGTCTGCATCATA 	2
---------------------------------------------------------------------GACGAAGGTCTGCATCATAGT 	3
----------------------------------------------------------------------ACGAAGGTCTGCATCATAG 	9
----------------------------------------------------------------------ACGAAGGTCTGCATCATAGT 	1787
----------------------------------------------------------------------ACGAAGGTCTGCATCATAGTC 	9
-----------------------------------------------------------------------CGAAGGTCTGCATCATAGTCAAG 	1
-----------------------------------------------------------------------CGAAGGTCTGCATCATAGTC 	3
-----------------------------------------------------------------------CGAAGGTCTGCATCATAGT 	98
-------------------------------------------------------------------------AAGGTCTGCATCATAGTCAAG 	1


Overlaps with: MNEST006973 MNEST039557 MNEST039558
Overlaps with miRBase pre-miRNAs: ppt-MIR902g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Physcomitrella patens GSM313214 ACGAAGGTCTGCATCATAGT TATGATGCAGATTCTTCATCT down 2 1


Secondary structure

GTCTCATTTCCTTCCGCTAGTCTATGATGCAGATTCTTCATCTGTTTCGTGTGATGCTTGTGCACGAGTCAGACGAAGGTCTGCATCATAGTCAAGAGGAAGCAAATATGA
------------TCCGCTAGTCTATGATGCAGA 	1
-----------------TAGTCTATGATGCAGATTCTTC 	26
------------------AGTCTATGATGCAGATTCTTCA 	1
---------------------CTATGATGCAGATTCTTCATC 	1
---------------------CTATGATGCAGATTCTTCAT 	1
----------------------TATGATGCAGATTCTTCATCT 	113
----------------------TATGATGCAGATTCTTCAT 	45
----------------------TATGATGCAGATTCTTCATC 	344
----------------------TATGATGCAGATTCTTCATCTG 	134
-----------------------ATGATGCAGATTCTTCATCT 	4
-----------------------ATGATGCAGATTCTTCATCTG 	7
-----------------------ATGATGCAGATTCTTCATC 	11
-----------------------ATGATGCAGATTCTTCATCTGT 	1
----------------------------------------------------------------------AGACGAAGGTCTGCATCATAGTC 	1
----------------------------------------------------------------------AGACGAAGGTCTGCATCATAGT 	2
----------------------------------------------------------------------AGACGAAGGTCTGCATCATAG 	4
----------------------------------------------------------------------AGACGAAGGTCTGCATCATA 	2
-----------------------------------------------------------------------GACGAAGGTCTGCATCATAGT 	3
------------------------------------------------------------------------ACGAAGGTCTGCATCATAG 	9
------------------------------------------------------------------------ACGAAGGTCTGCATCATAGT 	1787
------------------------------------------------------------------------ACGAAGGTCTGCATCATAGTC 	9
-------------------------------------------------------------------------CGAAGGTCTGCATCATAGTCAAG 	1
-------------------------------------------------------------------------CGAAGGTCTGCATCATAGTC 	3
-------------------------------------------------------------------------CGAAGGTCTGCATCATAGT 	98
---------------------------------------------------------------------------AAGGTCTGCATCATAGTCAAG 	1


Overlaps with: MNEST039553 MNEST039554
Overlaps with miRBase pre-miRNAs: ppt-MIR902e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Physcomitrella patens GSM313217 ACGAAGGTCTGCATCATAGT GTATGATGCAGATTCTTCATCT down 1 2


Secondary structure

ATGCTCATTTCCTCCTTCTAGCGTATGATGCAGATTCTTCATCTGTTGAACTGAATTTTTCTTAGTGATGCAGACGAAGGTCTGCATCATAGTCAAGGGGGAGGAAATATAT
-----------------------TATGATGCAGATTCTTCAT 	83
-----------------------TATGATGCAGATTCTTCATCTG 	9
-----------------------TATGATGCAGATTCTTCATCT 	55
-----------------------TATGATGCAGATTCTTCATC 	55
------------------------ATGATGCAGATTCTTCATCTGT 	1
----------------------------------------------------------------------CAGACGAAGGTCTGCATCATA 	1
-----------------------------------------------------------------------AGACGAAGGTCTGCATCATAG 	9
-----------------------------------------------------------------------AGACGAAGGTCTGCATCATA 	2
------------------------------------------------------------------------GACGAAGGTCTGCATCATAGT 	1
-------------------------------------------------------------------------ACGAAGGTCTGCATCATAGT 	332
-------------------------------------------------------------------------ACGAAGGTCTGCATCATAG 	20
-------------------------------------------------------------------------ACGAAGGTCTGCATCATAGTC 	5
--------------------------------------------------------------------------CGAAGGTCTGCATCATAGT 	11
----------------------------------------------------------------------------AAGGTCTGCATCATAGTCAAG 	1


Overlaps with: MNEST039549 MNEST039550
Overlaps with miRBase pre-miRNAs: ppt-MIR902c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Physcomitrella patens GSM313217 ACGAAGGTCTGCATCATAGT TATGATGCAGATTCTTCATCT down 2 1


Secondary structure

CTTCCGCTAGTCTATGATGCAGATTCTTCATCTGTTTAGCTGAATCTGCGTCAGTGTTTCAGTGTTACAGACGAAGGTCTGCATCATAGTCAAGAGGAA
-------TAGTCTATGATGCAGATTCTTC 	5
------------TATGATGCAGATTCTTCAT 	83
------------TATGATGCAGATTCTTCATCTG 	9
------------TATGATGCAGATTCTTCATCT 	55
------------TATGATGCAGATTCTTCATC 	55
-------------ATGATGCAGATTCTTCATCTGT 	1
-------------------------------------------------------------------CAGACGAAGGTCTGCATCATA 	1
--------------------------------------------------------------------AGACGAAGGTCTGCATCATAG 	9
--------------------------------------------------------------------AGACGAAGGTCTGCATCATA 	2
---------------------------------------------------------------------GACGAAGGTCTGCATCATAGT 	1
----------------------------------------------------------------------ACGAAGGTCTGCATCATAGT 	332
----------------------------------------------------------------------ACGAAGGTCTGCATCATAG 	20
----------------------------------------------------------------------ACGAAGGTCTGCATCATAGTC 	5
-----------------------------------------------------------------------CGAAGGTCTGCATCATAGT 	11
-------------------------------------------------------------------------AAGGTCTGCATCATAGTCAAG 	1


Overlaps with: MNEST006973 MNEST039557 MNEST039558
Overlaps with miRBase pre-miRNAs: ppt-MIR902g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
18 Physcomitrella patens GSM313217 ACGAAGGTCTGCATCATAGT TATGATGCAGATTCTTCATCT down 2 1


Secondary structure

GTCTCATTTCCTTCCGCTAGTCTATGATGCAGATTCTTCATCTGTTTCGTGTGATGCTTGTGCACGAGTCAGACGAAGGTCTGCATCATAGTCAAGAGGAAGCAAATATGA
-----------------TAGTCTATGATGCAGATTCTTC 	5
----------------------TATGATGCAGATTCTTCAT 	83
----------------------TATGATGCAGATTCTTCATCTG 	9
----------------------TATGATGCAGATTCTTCATCT 	55
----------------------TATGATGCAGATTCTTCATC 	55
-----------------------ATGATGCAGATTCTTCATCTGT 	1
---------------------------------------------------------------------CAGACGAAGGTCTGCATCATA 	1
----------------------------------------------------------------------AGACGAAGGTCTGCATCATAG 	9
----------------------------------------------------------------------AGACGAAGGTCTGCATCATA 	2
-----------------------------------------------------------------------GACGAAGGTCTGCATCATAGT 	1
------------------------------------------------------------------------ACGAAGGTCTGCATCATAGT 	332
------------------------------------------------------------------------ACGAAGGTCTGCATCATAG 	20
------------------------------------------------------------------------ACGAAGGTCTGCATCATAGTC 	5
-------------------------------------------------------------------------CGAAGGTCTGCATCATAGT 	11
---------------------------------------------------------------------------AAGGTCTGCATCATAGTCAAG 	1


Overlaps with: MNEST039553 MNEST039554
Overlaps with miRBase pre-miRNAs: ppt-MIR902e
HuntMi prediction: true miRNA