miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: ACGAGAGTCATCTGTGACAGG

selected species: Solanum lycopersicum

4 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Solanum lycopersicum	GSM304985	ACGAGAGTCATCTGTGACAGG	TGTCGCAGATGACTTTCGCCC	down	1	0

Secondary structure

GGTTCCTCCGAATCGCTCCGACGCCTTTGATGTTCACATCTTCCGGTAGTCCTGTCGCAGATGACTTTCGCCCATTTATGGAACCACACTTTCTTTAATTTGAATTCTATGTGGTAGGACGAGAGTCATCTGTGACAGGATAATGGAAGATCGAGTTATCAAAGGCTTATTGGGCGTTTCCTTTTTCA
------------------------------TGTTCACATCTTCCGGTAGTCC 	1
----------------------------------------TTCCGGTAGTCCTGTCGCAGATG 	2
----------------------------------------------------TGTCGCAGATGACTTTCGCCCA 	1
----------------------------------------------------TGTCGCAGATGACTTTCGCCC 	6
----------------------------------------------------------------------------------------------------------------------ACGAGAGTCATCTGTGACAGGA 	1
----------------------------------------------------------------------------------------------------------------------ACGAGAGTCATCTGTGACAGG 	10
-----------------------------------------------------------------------------------------------------------------------CGAGAGTCATCTGTGACAGGA 	1
-----------------------------------------------------------------------------------------------------------------------CGAGAGTCATCTGTGACAGG 	4

Overlaps with: MNEST041554 MNEST054567
Overlaps with miRBase pre-miRNAs: sly-MIR1919b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Solanum lycopersicum	GSM304985	ACGAGAGTCATCTGTGACAGG	TGTCGCAGATGACTTTCGCCC	down	1	0

Secondary structure

GGTTCCTCCGAATCGCTCCGACGCCTTTGATGTTCACATCTTCCGGTAGTCCTGTCGCAGATGACTTTCGCCCATTTATAGAACCACACTTTCTTTAATTTGAATTCTATGTGGTAGGACGAGAGTCATCTGTGACAGGATAATGGAAGATCGAGTTATCAAAGGCTTATTGGGCGTTTCCTTTTTCA
------------------------------TGTTCACATCTTCCGGTAGTCC 	1
----------------------------------------TTCCGGTAGTCCTGTCGCAGATG 	2
----------------------------------------------------TGTCGCAGATGACTTTCGCCCA 	1
----------------------------------------------------TGTCGCAGATGACTTTCGCCC 	6
----------------------------------------------------------------------------------------------------------------------ACGAGAGTCATCTGTGACAGGA 	1
----------------------------------------------------------------------------------------------------------------------ACGAGAGTCATCTGTGACAGG 	10
-----------------------------------------------------------------------------------------------------------------------CGAGAGTCATCTGTGACAGGA 	1
-----------------------------------------------------------------------------------------------------------------------CGAGAGTCATCTGTGACAGG 	4

Overlaps with: MNEST041555 MNEST054568
Overlaps with miRBase pre-miRNAs: sly-MIR1919c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Solanum lycopersicum	GSM304985	ACGAGAGTCATCTGTGACAGG	TGTCGCAGATGACTCTCGATCT	down	0	1

Secondary structure

AATCGCTCCGACGCCTTTGATGTTCACATCTTCCGGTAGTCCTGTCGCAGATGACTCTCGATCTTGTCATTAAGCCCCTTTCTCTAAGTCTAATTAATTTGAATTCAATGTGGTAGGACGAGAGTCATCTGTGACAGGATTATGGAAGATCGAGTTATCAAAGGGCGTTTTCTTCCT
--------------------TGTTCACATCTTCCGGTAGTCC 	1
------------------------------TTCCGGTAGTCCTGTCGCAGATG 	2
---------------------------------------------------------------------------------------------------------------------ACGAGAGTCATCTGTGACAGGA 	1
---------------------------------------------------------------------------------------------------------------------ACGAGAGTCATCTGTGACAGG 	10
----------------------------------------------------------------------------------------------------------------------CGAGAGTCATCTGTGACAGGA 	1
----------------------------------------------------------------------------------------------------------------------CGAGAGTCATCTGTGACAGG 	4

Overlaps with: MNEST041553 MNEST054566
Overlaps with miRBase pre-miRNAs: sly-MIR1919a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Solanum lycopersicum	GSM304985	ACGAGAGTCATCTGTGACAGG	TGTCGCAGATGACTTTCGCCC	down	1	0

Secondary structure

GATCGCTCCGACGCCTTTGATGTTCACATCTTCTGGTAGTCCTGTCGCAGATGACTTTCGCCCTTCTAAGGAACCACACTTTCTGTAAATCTAATTAATTTGAATTCAATGTGGCAGGACGAGAGTCATCTGTGACAGGATAATGGAAGATCTAGTTATCAAAGGCTTATTCGGGCGT
------------------------------------------TGTCGCAGATGACTTTCGCCC 	6
----------------------------------------------------------------------------------------------------------------------ACGAGAGTCATCTGTGACAGGA 	1
----------------------------------------------------------------------------------------------------------------------ACGAGAGTCATCTGTGACAGG 	10
-----------------------------------------------------------------------------------------------------------------------CGAGAGTCATCTGTGACAGGA 	1
-----------------------------------------------------------------------------------------------------------------------CGAGAGTCATCTGTGACAGG 	4

HuntMi prediction: true miRNA