miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: ACGGGAATGGTCACTTACAACT

selected species: Bombyx mori

3 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Bombyx mori	GSM449725_whole_body_clean	ACGGGAATGGTCACTTACAACT	CTGAAAGTGTCCATTTCCGTTT	up	3	0

Secondary structure

CCTCATCACACATGGAAAGGAAATTATTGAAACGGGAATGGTCACTTACAACTGTTTTTTCTTTCTAGCTGAAAGTGTCCATTTCCGTTTTGATACTATGCCTATCATATCTAATAGC
-------------------------------ACGGGAATGGTCACTTACAACT 	6
--------------------------------------------------------------------CTGAAAGTGTCCATTTCCGTT 	1
--------------------------------------------------------------------CTGAAAGTGTCCATTTCCGTTT 	1

Overlaps with: MNEST035621
Overlaps with miRBase pre-miRNAs: bmo-mir-2757
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Bombyx mori	GSM449726_Anterior_silkgland_clean	ACGGGAATGGTCACTTACAACT	CTGAAAGTGTCCATTTCCGTTT	up	3	0

Secondary structure

CCTCATCACACATGGAAAGGAAATTATTGAAACGGGAATGGTCACTTACAACTGTTTTTTCTTTCTAGCTGAAAGTGTCCATTTCCGTTTTGATACTATGCCTATCATATCTAATAGC
-------------------------------ACGGGAATGGTCACTTACAACT 	363
-------------------------------ACGGGAATGGTCACTTACAAC 	5
-------------------------------ACGGGAATGGTCACTTACA 	4
--------------------------------CGGGAATGGTCACTTACAACTG 	2
--------------------------------CGGGAATGGTCACTTACAACT 	2
-------------------------------------------------------------------GCTGAAAGTGTCCATTTCCGTT 	2
--------------------------------------------------------------------CTGAAAGTGTCCATTTCCGTTT 	50
--------------------------------------------------------------------CTGAAAGTGTCCATTTCCGTT 	11
--------------------------------------------------------------------CTGAAAGTGTCCATTTCCGT 	3
--------------------------------------------------------------------CTGAAAGTGTCCATTTCCGTTTT 	2
---------------------------------------------------------------------TGAAAGTGTCCATTTCCGTTT 	3
---------------------------------------------------------------------TGAAAGTGTCCATTTCCGTT 	2
---------------------------------------------------------------------TGAAAGTGTCCATTTCCGTTTT 	1

Overlaps with: MNEST035621
Overlaps with miRBase pre-miRNAs: bmo-mir-2757
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Bombyx mori	GSM449727_Posterior_silkgland_clean	ACGGGAATGGTCACTTACAACT	CTGAAAGTGTCCATTTCCGTTT	up	3	0

Secondary structure

CCTCATCACACATGGAAAGGAAATTATTGAAACGGGAATGGTCACTTACAACTGTTTTTTCTTTCTAGCTGAAAGTGTCCATTTCCGTTTTGATACTATGCCTATCATATCTAATAGC
-------------------------------ACGGGAATGGTCACTTACAACT 	21
-------------------------------ACGGGAATGGTCACTTACAA 	1
--------------------------------CGGGAATGGTCACTTACAACT 	1
--------------------------------------------------------------------CTGAAAGTGTCCATTTCCGTTT 	4
--------------------------------------------------------------------CTGAAAGTGTCCATTTCCGTT 	4
--------------------------------------------------------------------CTGAAAGTGTCCATTTCCGT 	1
--------------------------------------------------------------------CTGAAAGTGTCCATTTCCGTTTT 	1
---------------------------------------------------------------------TGAAAGTGTCCATTTCCGTTT 	2

Overlaps with: MNEST035621
Overlaps with miRBase pre-miRNAs: bmo-mir-2757
HuntMi prediction: true miRNA