miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: ACGTATACTGAATGTATCCTGA

selected species: Drosophila melanogaster



17 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Drosophila melanogaster GSM360257-14325 ACGTATACTGAATGTATCCTGA GGTATACCTTCAGTATACGTAA up 3 0


Secondary structure

CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAGAGCACTAACA
---------------------ACGTATACTGAATGTATCCT 	2
---------------------ACGTATACTGAATGTATCCTGA 	75
---------------------ACGTATACTGAATGTATCCTG 	9
-------------------------------------------------------CGGTATACCTTCAGTATACGTAA 	2
-------------------------------------------------------CGGTATACCTTCAGTATACGTAAC 	1
-------------------------------------------------------CGGTATACCTTCAGTATACGTA 	4
----------------------------------------------------------TATACCTTCAGTATACGTAACA 	1

Overlaps with: MNEST036230 MNEST036231 MNEST036745 MNEST036746 MNEST037186 MNEST037187 MNEST037322 MNEST037323 MNEST037557 MNEST037558
Overlaps with miRBase pre-miRNAs: dya-mir-iab-4 dme-mir-iab-8 dsi-mir-iab-4 dme-mir-iab-4 dse-mir-iab-4 der-mir-iab-4
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Drosophila melanogaster GSM399107-16288 ACGTATACTGAATGTATCCTGA GGTATACCTTCAGTATACGTAA up 3 0


Secondary structure

CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAGAGCACTAACA
---------------------ACGTATACTGAATGTATCCT 	1
---------------------ACGTATACTGAATGTATCCTG 	3
---------------------ACGTATACTGAATGTATCCTGA 	111
----------------------CGTATACTGAATGTATCCTGA 	1
-------------------------------------------------------CGGTATACCTTCAGTATACGTAA 	1
-------------------------------------------------------CGGTATACCTTCAGTATACGT 	2
-------------------------------------------------------CGGTATACCTTCAGTATACGTA 	9
----------------------------------------------------------TATACCTTCAGTATACGTA 	1

Overlaps with: MNEST036230 MNEST036231 MNEST036745 MNEST036746 MNEST037186 MNEST037187 MNEST037322 MNEST037323 MNEST037557 MNEST037558
Overlaps with miRBase pre-miRNAs: dya-mir-iab-4 dme-mir-iab-8 dsi-mir-iab-4 dme-mir-iab-4 dse-mir-iab-4 der-mir-iab-4
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Drosophila melanogaster GSM399106-16287 ACGTATACTGAATGTATCCTGA GGTATACCTTCAGTATACGTAA up 3 0


Secondary structure

CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAGAGCACTAACA
---------------------ACGTATACTGAATGTATCCT 	1
---------------------ACGTATACTGAATGTATCCTGA 	37
---------------------ACGTATACTGAATGTATCCTG 	1
----------------------CGTATACTGAATGTATCCTGA 	1
-------------------------------------------------------CGGTATACCTTCAGTATACGTAA 	2
-------------------------------------------------------CGGTATACCTTCAGTATAC 	1
-------------------------------------------------------CGGTATACCTTCAGTATACGTA 	9

Overlaps with: MNEST036230 MNEST036231 MNEST036745 MNEST036746 MNEST037186 MNEST037187 MNEST037322 MNEST037323 MNEST037557 MNEST037558
Overlaps with miRBase pre-miRNAs: dya-mir-iab-4 dme-mir-iab-8 dsi-mir-iab-4 dme-mir-iab-4 dse-mir-iab-4 der-mir-iab-4
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Drosophila melanogaster GSM466487_wt_total ACGTATACTGAATGTATCCTGA GGTATACCTTCAGTATACGTAA up 3 0


Secondary structure

CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAGAGCACTAACA
---------------------ACGTATACTGAATGTATCCTGA 	16
---------------------ACGTATACTGAATGTATCCTG 	7

Overlaps with: MNEST036230 MNEST036231 MNEST036745 MNEST036746 MNEST037186 MNEST037187 MNEST037322 MNEST037323 MNEST037557 MNEST037558
Overlaps with miRBase pre-miRNAs: dya-mir-iab-4 dme-mir-iab-8 dsi-mir-iab-4 dme-mir-iab-4 dse-mir-iab-4 der-mir-iab-4
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Drosophila melanogaster GSM399105-16286 ACGTATACTGAATGTATCCTGA GGTATACCTTCAGTATACGTAA up 3 0


Secondary structure

CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAGAGCACTAACA
---------------------ACGTATACTGAATGTATCCT 	1
---------------------ACGTATACTGAATGTATCCTGA 	65
---------------------ACGTATACTGAATGTATCCTG 	3
-------------------------------------------------------CGGTATACCTTCAGTATACGTAA 	6
-------------------------------------------------------CGGTATACCTTCAGTATACGT 	3
-------------------------------------------------------CGGTATACCTTCAGTATACGTA 	15
----------------------------------------------------------TATACCTTCAGTATACGTAACA 	1

Overlaps with: MNEST036230 MNEST036231 MNEST036745 MNEST036746 MNEST037186 MNEST037187 MNEST037322 MNEST037323 MNEST037557 MNEST037558
Overlaps with miRBase pre-miRNAs: dya-mir-iab-4 dme-mir-iab-8 dsi-mir-iab-4 dme-mir-iab-4 dse-mir-iab-4 der-mir-iab-4
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Drosophila melanogaster GSM360262-14327 ACGTATACTGAATGTATCCTGA GGTATACCTTCAGTATACGTAA up 3 0


Secondary structure

CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAGAGCACTAACA
---------------------ACGTATACTGAATGTATCCT 	2
---------------------ACGTATACTGAATGTATCCTG 	26
---------------------ACGTATACTGAATGTATCCTGA 	237
----------------------CGTATACTGAATGTATCCTGA 	3
----------------------CGTATACTGAATGTATCCTG 	1
-------------------------------------------------------CGGTATACCTTCAGTATACGTAA 	18
-------------------------------------------------------CGGTATACCTTCAGTATACGTAAC 	2
-------------------------------------------------------CGGTATACCTTCAGTATAC 	4
-------------------------------------------------------CGGTATACCTTCAGTATACGT 	2
-------------------------------------------------------CGGTATACCTTCAGTATACG 	1
-------------------------------------------------------CGGTATACCTTCAGTATACGTA 	16
--------------------------------------------------------GGTATACCTTCAGTATACGTAA 	6
----------------------------------------------------------TATACCTTCAGTATACGTAACA 	5

Overlaps with: MNEST036230 MNEST036231 MNEST036745 MNEST036746 MNEST037186 MNEST037187 MNEST037322 MNEST037323 MNEST037557 MNEST037558
Overlaps with miRBase pre-miRNAs: dya-mir-iab-4 dme-mir-iab-8 dsi-mir-iab-4 dme-mir-iab-4 dse-mir-iab-4 der-mir-iab-4
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Drosophila melanogaster GSM360256-14324 ACGTATACTGAATGTATCCTGA GGTATACCTTCAGTATACGTAA up 3 0


Secondary structure

CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAGAGCACTAACA
---------------------ACGTATACTGAATGTATCCTGA 	86
---------------------ACGTATACTGAATGTATCCTG 	8
---------------------ACGTATACTGAATGTATCC 	1
----------------------CGTATACTGAATGTATCCTGA 	1
-----------------------GTATACTGAATGTATCCTGA 	1
-------------------------------------------------------CGGTATACCTTCAGTATACGTAA 	3
-------------------------------------------------------CGGTATACCTTCAGTATACGTAAC 	2
-------------------------------------------------------CGGTATACCTTCAGTATAC 	1
-------------------------------------------------------CGGTATACCTTCAGTATACGTA 	4
--------------------------------------------------------GGTATACCTTCAGTATACGTAAC 	1
----------------------------------------------------------TATACCTTCAGTATACGTAACAC 	1

Overlaps with: MNEST036230 MNEST036231 MNEST036745 MNEST036746 MNEST037186 MNEST037187 MNEST037322 MNEST037323 MNEST037557 MNEST037558
Overlaps with miRBase pre-miRNAs: dya-mir-iab-4 dme-mir-iab-8 dsi-mir-iab-4 dme-mir-iab-4 dse-mir-iab-4 der-mir-iab-4
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Drosophila melanogaster GSM466494_r2d2_heterozygotes_untreated ACGTATACTGAATGTATCCTGA GGTATACCTTCAGTATACGTAA up 3 0


Secondary structure

CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAGAGCACTAACA
---------------------ACGTATACTGAATGTATCCTGA 	22
---------------------ACGTATACTGAATGTATCCTG 	4
----------------------------------------------------------TATACCTTCAGTATACGTAAC 	1

Overlaps with: MNEST036230 MNEST036231 MNEST036745 MNEST036746 MNEST037186 MNEST037187 MNEST037322 MNEST037323 MNEST037557 MNEST037558
Overlaps with miRBase pre-miRNAs: dya-mir-iab-4 dme-mir-iab-8 dsi-mir-iab-4 dme-mir-iab-4 dse-mir-iab-4 der-mir-iab-4
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Drosophila melanogaster GSM466496_r2d2_homozygotes_untreated ACGTATACTGAATGTATCCTGA GGTATACCTTCAGTATACGTAA up 3 0


Secondary structure

CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAGAGCACTAACA
---------------------ACGTATACTGAATGTATCCTGA 	49
---------------------ACGTATACTGAATGTATCCTG 	2
---------------------ACGTATACTGAATGTATCCT 	8

Overlaps with: MNEST036230 MNEST036231 MNEST036745 MNEST036746 MNEST037186 MNEST037187 MNEST037322 MNEST037323 MNEST037557 MNEST037558
Overlaps with miRBase pre-miRNAs: dya-mir-iab-4 dme-mir-iab-8 dsi-mir-iab-4 dme-mir-iab-4 dse-mir-iab-4 der-mir-iab-4
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Drosophila melanogaster GSM286605-9793 ACGTATACTGAATGTATCCTGA GGTATACCTTCAGTATACGTAA up 3 0


Secondary structure

CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAGAGCACTAACA
-------------------AAACGTATACTGAATGTATCCTGA 	2
--------------------AACGTATACTGAATGTATCCTGA 	1
---------------------ACGTATACTGAATGTATCCT 	2
---------------------ACGTATACTGAATGTATCCTGAGTGT 	1
---------------------ACGTATACTGAATGTATCCTG 	17
---------------------ACGTATACTGAATGTATCCTGA 	1219
----------------------CGTATACTGAATGTATCCTGA 	12
-----------------------GTATACTGAATGTATCCTGA 	1
------------------------TATACTGAATGTATCCTGA 	1
-------------------------------------------------------CGGTATACCTTCAGTATACGTAA 	189
-------------------------------------------------------CGGTATACCTTCAGTATACGTAAC 	127
-------------------------------------------------------CGGTATACCTTCAGTATACGTAACA 	7
-------------------------------------------------------CGGTATACCTTCAGTATACGT 	5
-------------------------------------------------------CGGTATACCTTCAGTATAC 	1
-------------------------------------------------------CGGTATACCTTCAGTATACG 	1
-------------------------------------------------------CGGTATACCTTCAGTATACGTA 	129
--------------------------------------------------------GGTATACCTTCAGTATACGTA 	11
--------------------------------------------------------GGTATACCTTCAGTATACGTAA 	77
--------------------------------------------------------GGTATACCTTCAGTATACGTAAC 	23
---------------------------------------------------------GTATACCTTCAGTATACGTAAC 	2
----------------------------------------------------------TATACCTTCAGTATACGTAACAC 	2

Overlaps with: MNEST036230 MNEST036231 MNEST036745 MNEST036746 MNEST037186 MNEST037187 MNEST037322 MNEST037323 MNEST037557 MNEST037558
Overlaps with miRBase pre-miRNAs: dya-mir-iab-4 dme-mir-iab-8 dsi-mir-iab-4 dme-mir-iab-4 dse-mir-iab-4 der-mir-iab-4
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Drosophila melanogaster GSM360260-14326 ACGTATACTGAATGTATCCTGA GGTATACCTTCAGTATACGTAA up 3 0


Secondary structure

CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAGAGCACTAACA
---------------------ACGTATACTGAATGTATCCT 	1
---------------------ACGTATACTGAATGTATCCTGA 	66
---------------------ACGTATACTGAATGTATCCTG 	5
---------------------ACGTATACTGAATGTATCC 	1
-------------------------------------------------------CGGTATACCTTCAGTATACGTAA 	14
-------------------------------------------------------CGGTATACCTTCAGTATACGTAAC 	1
-------------------------------------------------------CGGTATACCTTCAGTATAC 	2
-------------------------------------------------------CGGTATACCTTCAGTATACG 	2
-------------------------------------------------------CGGTATACCTTCAGTATACGTA 	9
--------------------------------------------------------GGTATACCTTCAGTATACGTAA 	1
---------------------------------------------------------GTATACCTTCAGTATACGTAAC 	1

Overlaps with: MNEST036230 MNEST036231 MNEST036745 MNEST036746 MNEST037186 MNEST037187 MNEST037322 MNEST037323 MNEST037557 MNEST037558
Overlaps with miRBase pre-miRNAs: dya-mir-iab-4 dme-mir-iab-8 dsi-mir-iab-4 dme-mir-iab-4 dse-mir-iab-4 der-mir-iab-4
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Drosophila melanogaster GSM322543-14323 ACGTATACTGAATGTATCCTGA GGTATACCTTCAGTATACGTAA up 3 0


Secondary structure

CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAGAGCACTAACA
---------------------ACGTATACTGAATGTATCCTG 	1
---------------------ACGTATACTGAATGTATCCTGA 	48
-------------------------------------------------------CGGTATACCTTCAGTATACGTAAC 	21
-------------------------------------------------------CGGTATACCTTCAGTATACGTA 	4
----------------------------------------------------------TATACCTTCAGTATACGTAACA 	1

Overlaps with: MNEST036230 MNEST036231 MNEST036745 MNEST036746 MNEST037186 MNEST037187 MNEST037322 MNEST037323 MNEST037557 MNEST037558
Overlaps with miRBase pre-miRNAs: dya-mir-iab-4 dme-mir-iab-8 dsi-mir-iab-4 dme-mir-iab-4 dse-mir-iab-4 der-mir-iab-4
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Drosophila melanogaster GSM286607-9796 ACGTATACTGAATGTATCCTGA GGTATACCTTCAGTATACGTAA up 3 0


Secondary structure

CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAGAGCACTAACA
--------------------AACGTATACTGAATGTATCCTGA 	9
---------------------ACGTATACTGAATGTATCCT 	18
---------------------ACGTATACTGAATGTATCCTG 	77
---------------------ACGTATACTGAATGTATCCTGA 	2272
---------------------ACGTATACTGAATGTATCC 	6
----------------------CGTATACTGAATGTATCCTGA 	8
----------------------CGTATACTGAATGTATCCTG 	4
-----------------------GTATACTGAATGTATCCTGA 	5
------------------------TATACTGAATGTATCCTGA 	1
-------------------------------------------------------CGGTATACCTTCAGTATACGTAA 	118
-------------------------------------------------------CGGTATACCTTCAGTATACGTAAC 	45
-------------------------------------------------------CGGTATACCTTCAGTATAC 	9
-------------------------------------------------------CGGTATACCTTCAGTATACGT 	4
-------------------------------------------------------CGGTATACCTTCAGTATACG 	5
-------------------------------------------------------CGGTATACCTTCAGTATACGTA 	43
--------------------------------------------------------GGTATACCTTCAGTATACGTAAC 	14
--------------------------------------------------------GGTATACCTTCAGTATACGTAA 	3
----------------------------------------------------------TATACCTTCAGTATACGTAACA 	3
------------------------------------------------------------TACCTTCAGTATACGTAAC 	6

Overlaps with: MNEST036230 MNEST036231 MNEST036745 MNEST036746 MNEST037186 MNEST037187 MNEST037322 MNEST037323 MNEST037557 MNEST037558
Overlaps with miRBase pre-miRNAs: dya-mir-iab-4 dme-mir-iab-8 dsi-mir-iab-4 dme-mir-iab-4 dse-mir-iab-4 der-mir-iab-4
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Drosophila melanogaster GSM286604-9792 ACGTATACTGAATGTATCCTGA GGTATACCTTCAGTATACGTAA up 3 0


Secondary structure

CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAGAGCACTAACA
---------------------ACGTATACTGAATGTATCCTG 	5
---------------------ACGTATACTGAATGTATCCTGA 	197
----------------------CGTATACTGAATGTATCCTG 	1
-----------------------GTATACTGAATGTATCCTG 	2
-------------------------------------------------------CGGTATACCTTCAGTATACGTAA 	15
-------------------------------------------------------CGGTATACCTTCAGTATACGTAAC 	15
-------------------------------------------------------CGGTATACCTTCAGTATACGT 	1
-------------------------------------------------------CGGTATACCTTCAGTATACGTA 	30
--------------------------------------------------------GGTATACCTTCAGTATACGTAAC 	3

Overlaps with: MNEST036230 MNEST036231 MNEST036745 MNEST036746 MNEST037186 MNEST037187 MNEST037322 MNEST037323 MNEST037557 MNEST037558
Overlaps with miRBase pre-miRNAs: dya-mir-iab-4 dme-mir-iab-8 dsi-mir-iab-4 dme-mir-iab-4 dse-mir-iab-4 der-mir-iab-4
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Drosophila melanogaster GSM322208-14317 ACGTATACTGAATGTATCCTGA GGTATACCTTCAGTATACGTAA up 3 0


Secondary structure

CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAGAGCACTAACA
---------------------ACGTATACTGAATGTATCCT 	3
---------------------ACGTATACTGAATGTATCCTG 	6
---------------------ACGTATACTGAATGTATCCTGA 	53
---------------------ACGTATACTGAATGTATCC 	2
----------------------CGTATACTGAATGTATCCTGA 	1
-------------------------------------------------------CGGTATACCTTCAGTATACGTAA 	6
-------------------------------------------------------CGGTATACCTTCAGTATACGT 	2
-------------------------------------------------------CGGTATACCTTCAGTATACGTA 	13

Overlaps with: MNEST036230 MNEST036231 MNEST036745 MNEST036746 MNEST037186 MNEST037187 MNEST037322 MNEST037323 MNEST037557 MNEST037558
Overlaps with miRBase pre-miRNAs: dya-mir-iab-4 dme-mir-iab-8 dsi-mir-iab-4 dme-mir-iab-4 dse-mir-iab-4 der-mir-iab-4
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Drosophila melanogaster GSM399110-16285 ACGTATACTGAATGTATCCTGA GGTATACCTTCAGTATACGTAA up 3 0


Secondary structure

CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAGAGCACTAACA
---------------------ACGTATACTGAATGTATCCTGA 	7
-------------------------------------------------------CGGTATACCTTCAGTATACGTAA 	1
-------------------------------------------------------CGGTATACCTTCAGTATACGT 	3

Overlaps with: MNEST036230 MNEST036231 MNEST036745 MNEST036746 MNEST037186 MNEST037187 MNEST037322 MNEST037323 MNEST037557 MNEST037558
Overlaps with miRBase pre-miRNAs: dya-mir-iab-4 dme-mir-iab-8 dsi-mir-iab-4 dme-mir-iab-4 dse-mir-iab-4 der-mir-iab-4
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Drosophila melanogaster GSM466492_dcr-2_homozygotes_untreated ACGTATACTGAATGTATCCTGA GGTATACCTTCAGTATACGTAA up 3 0


Secondary structure

CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAGAGCACTAACA
---------------------ACGTATACTGAATGTATCCTG 	1
---------------------ACGTATACTGAATGTATCCTGA 	6
----------------------------------------------------------TATACCTTCAGTATACGTAACA 	1

Overlaps with: MNEST036230 MNEST036231 MNEST036745 MNEST036746 MNEST037186 MNEST037187 MNEST037322 MNEST037323 MNEST037557 MNEST037558
Overlaps with miRBase pre-miRNAs: dya-mir-iab-4 dme-mir-iab-8 dsi-mir-iab-4 dme-mir-iab-4 dse-mir-iab-4 der-mir-iab-4
HuntMi prediction: true miRNA