miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: ACTCCATTTGTTTTGATGATGG

selected species: Mus musculus



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM527274-2107 ACTCCATTTGTTTTGATGATGG ATCATCGTCTCAAATGAGTCT up 3 1


Secondary structure

TGTTGGATGAGCCCTCGGAGGACTCCATTTGTTTTGATGATGGATTCTTAAGCTCCATCATCGTCTCAAATGAGTCTTCAGAGGGTTCTATCATG
TGTTGGATGAGCCCTCGGA 	2
--TTGGATGAGCCCTCGGAGG 	2
-----------------GAGGACTCCATTTGTTTTGATGAT 	1
------------------AGGACTCCATTTGTTTTGATG 	39
------------------AGGACTCCATTTGTTTTGATGA 	125
------------------AGGACTCCATTTGTTTTGATGAT 	109
------------------AGGACTCCATTTGTTTTGA 	8
------------------AGGACTCCATTTGTTTTGAT 	10
-------------------GGACTCCATTTGTTTTGATGAT 	507
-------------------GGACTCCATTTGTTTTGATG 	13
-------------------GGACTCCATTTGTTTTGAT 	5
-------------------GGACTCCATTTGTTTTGATGA 	153
-------------------GGACTCCATTTGTTTTGATGATGG 	3
-------------------GGACTCCATTTGTTTTGATGATG 	6
--------------------GACTCCATTTGTTTTGATGAT 	2
--------------------GACTCCATTTGTTTTGATGATGG 	45
--------------------GACTCCATTTGTTTTGATGATGGATT 	1
--------------------GACTCCATTTGTTTTGATGA 	2
--------------------GACTCCATTTGTTTTGATGATG 	13
--------------------GACTCCATTTGTTTTGATG 	1
---------------------ACTCCATTTGTTTTGATGATGG 	12469
---------------------ACTCCATTTGTTTTGATGA 	4
---------------------ACTCCATTTGTTTTGATGATG 	924
---------------------ACTCCATTTGTTTTGATGATGGA 	1637
---------------------ACTCCATTTGTTTTGATGAT 	43
----------------------CTCCATTTGTTTTGATGATG 	10
----------------------CTCCATTTGTTTTGATGATGG 	204
----------------------CTCCATTTGTTTTGATGAT 	3
----------------------CTCCATTTGTTTTGATGATGGA 	39
-----------------------TCCATTTGTTTTGATGATGG 	528
-----------------------TCCATTTGTTTTGATGATGGA 	165
-----------------------TCCATTTGTTTTGATGATG 	8
------------------------CCATTTGTTTTGATGATGGA 	13
------------------------CCATTTGTTTTGATGATGG 	49
-------------------------CATTTGTTTTGATGATGGA 	463
----------------------------------------TGGATTCTTAAGCTCCATC 	1
-------------------------------------------------------CATCATCGTCTCAAATGAGTCTT 	6
-------------------------------------------------------CATCATCGTCTCAAATGAGTC 	87
-------------------------------------------------------CATCATCGTCTCAAATGAG 	122
-------------------------------------------------------CATCATCGTCTCAAATGAGTCT 	863
-------------------------------------------------------CATCATCGTCTCAAATGAGT 	14
--------------------------------------------------------ATCATCGTCTCAAATGAGTCTTC 	2
--------------------------------------------------------ATCATCGTCTCAAATGAGTCTT 	86
--------------------------------------------------------ATCATCGTCTCAAATGAGTC 	26
--------------------------------------------------------ATCATCGTCTCAAATGAGTCT 	920
--------------------------------------------------------ATCATCGTCTCAAATGAGT 	46
---------------------------------------------------------TCATCGTCTCAAATGAGTCTTC 	80
---------------------------------------------------------TCATCGTCTCAAATGAGTCT 	41
---------------------------------------------------------TCATCGTCTCAAATGAGTC 	6
---------------------------------------------------------TCATCGTCTCAAATGAGTCTT 	103
----------------------------------------------------------CATCGTCTCAAATGAGTCTTCA 	3
----------------------------------------------------------CATCGTCTCAAATGAGTCTTC 	51
----------------------------------------------------------CATCGTCTCAAATGAGTCTT 	6
----------------------------------------------------------CATCGTCTCAAATGAGTCT 	4
-----------------------------------------------------------ATCGTCTCAAATGAGTCTT 	3
-----------------------------------------------------------ATCGTCTCAAATGAGTCTTC 	13


Overlaps with: MNEST032507
Overlaps with miRBase pre-miRNAs: mmu-mir-3071 mmu-mir-136 rno-mir-136
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM527280 ACTCCATTTGTTTTGATGATGG ATCATCGTCTCAAATGAGTCT up 3 1


Secondary structure

TGTTGGATGAGCCCTCGGAGGACTCCATTTGTTTTGATGATGGATTCTTAAGCTCCATCATCGTCTCAAATGAGTCTTCAGAGGGTTCTATCATG
--TTGGATGAGCCCTCGGAGG 	1
------------------AGGACTCCATTTGTTTTGATGATG 	3
------------------AGGACTCCATTTGTTTTGATG 	26
------------------AGGACTCCATTTGTTTTGATGA 	65
------------------AGGACTCCATTTGTTTTGATGAT 	34
------------------AGGACTCCATTTGTTTTGAT 	4
------------------AGGACTCCATTTGTTTTGA 	10
-------------------GGACTCCATTTGTTTTGATGA 	63
-------------------GGACTCCATTTGTTTTGATGAT 	207
-------------------GGACTCCATTTGTTTTGATGATG 	3
-------------------GGACTCCATTTGTTTTGATGATGG 	1
-------------------GGACTCCATTTGTTTTGATG 	7
-------------------GGACTCCATTTGTTTTGAT 	2
--------------------GACTCCATTTGTTTTGATGAT 	1
--------------------GACTCCATTTGTTTTGATGATGG 	15
--------------------GACTCCATTTGTTTTGATGATG 	1
--------------------GACTCCATTTGTTTTGATGA 	3
---------------------ACTCCATTTGTTTTGATGATG 	415
---------------------ACTCCATTTGTTTTGATGAT 	10
---------------------ACTCCATTTGTTTTGATGATGG 	5491
---------------------ACTCCATTTGTTTTGATGATGGAT 	1
---------------------ACTCCATTTGTTTTGATGATGGA 	492
---------------------ACTCCATTTGTTTTGATGA 	4
----------------------CTCCATTTGTTTTGATGATGGA 	24
----------------------CTCCATTTGTTTTGATGATG 	4
----------------------CTCCATTTGTTTTGATGATGG 	127
-----------------------TCCATTTGTTTTGATGATGG 	179
-----------------------TCCATTTGTTTTGATGATGGA 	44
-----------------------TCCATTTGTTTTGATGATG 	7
------------------------CCATTTGTTTTGATGATGG 	18
-------------------------CATTTGTTTTGATGATGGA 	113
-------------------------------------------------------CATCATCGTCTCAAATGAGTCTT 	2
-------------------------------------------------------CATCATCGTCTCAAATGAGTCT 	312
-------------------------------------------------------CATCATCGTCTCAAATGAGT 	9
-------------------------------------------------------CATCATCGTCTCAAATGAGTC 	36
-------------------------------------------------------CATCATCGTCTCAAATGAG 	48
--------------------------------------------------------ATCATCGTCTCAAATGAGTCTTC 	1
--------------------------------------------------------ATCATCGTCTCAAATGAGTCT 	322
--------------------------------------------------------ATCATCGTCTCAAATGAGTC 	11
--------------------------------------------------------ATCATCGTCTCAAATGAGTCTT 	33
--------------------------------------------------------ATCATCGTCTCAAATGAGT 	19
---------------------------------------------------------TCATCGTCTCAAATGAGTCT 	15
---------------------------------------------------------TCATCGTCTCAAATGAGTC 	1
---------------------------------------------------------TCATCGTCTCAAATGAGTCTTC 	27
---------------------------------------------------------TCATCGTCTCAAATGAGTCTT 	44
----------------------------------------------------------CATCGTCTCAAATGAGTCTT 	5
----------------------------------------------------------CATCGTCTCAAATGAGTCT 	1
----------------------------------------------------------CATCGTCTCAAATGAGTCTTCA 	7
----------------------------------------------------------CATCGTCTCAAATGAGTCTTC 	31
-----------------------------------------------------------ATCGTCTCAAATGAGTCTT 	1
-----------------------------------------------------------ATCGTCTCAAATGAGTCTTC 	5


Overlaps with: MNEST032507
Overlaps with miRBase pre-miRNAs: mmu-mir-3071 mmu-mir-136 rno-mir-136
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM527276 ACTCCATTTGTTTTGATGATGG ATCATCGTCTCAAATGAGTCT up 3 1


Secondary structure

TGTTGGATGAGCCCTCGGAGGACTCCATTTGTTTTGATGATGGATTCTTAAGCTCCATCATCGTCTCAAATGAGTCTTCAGAGGGTTCTATCATG
TGTTGGATGAGCCCTCGGA 	1
------------------AGGACTCCATTTGTTTTGATG 	29
------------------AGGACTCCATTTGTTTTGATGAT 	115
------------------AGGACTCCATTTGTTTTGATGA 	146
------------------AGGACTCCATTTGTTTTGAT 	8
------------------AGGACTCCATTTGTTTTGA 	14
-------------------GGACTCCATTTGTTTTGATGA 	162
-------------------GGACTCCATTTGTTTTGATGAT 	557
-------------------GGACTCCATTTGTTTTGATGATG 	11
-------------------GGACTCCATTTGTTTTGATGATGG 	5
-------------------GGACTCCATTTGTTTTGATG 	16
-------------------GGACTCCATTTGTTTTGAT 	1
--------------------GACTCCATTTGTTTTGATGAT 	7
--------------------GACTCCATTTGTTTTGATGATGGA 	2
--------------------GACTCCATTTGTTTTGATGATG 	6
--------------------GACTCCATTTGTTTTGATGATGG 	60
--------------------GACTCCATTTGTTTTGATGA 	1
---------------------ACTCCATTTGTTTTGATGATG 	731
---------------------ACTCCATTTGTTTTGATGAT 	24
---------------------ACTCCATTTGTTTTGATGATGG 	10630
---------------------ACTCCATTTGTTTTGATGATGGAT 	1
---------------------ACTCCATTTGTTTTGATGATGGA 	1395
---------------------ACTCCATTTGTTTTGATGA 	5
----------------------CTCCATTTGTTTTGATGATGGA 	48
----------------------CTCCATTTGTTTTGATGATG 	4
----------------------CTCCATTTGTTTTGATGATGG 	199
----------------------CTCCATTTGTTTTGATGAT 	2
-----------------------TCCATTTGTTTTGATGATGG 	472
-----------------------TCCATTTGTTTTGATGATGGA 	184
-----------------------TCCATTTGTTTTGATGATG 	6
------------------------CCATTTGTTTTGATGATGG 	43
------------------------CCATTTGTTTTGATGATGGA 	3
-------------------------CATTTGTTTTGATGATGGA 	61
----------------------------------------------------CTCCATCATCGTCTCAAATGAG 	1
-------------------------------------------------------CATCATCGTCTCAAATGAGTCTT 	11
-------------------------------------------------------CATCATCGTCTCAAATGAGTCT 	701
-------------------------------------------------------CATCATCGTCTCAAATGAGT 	16
-------------------------------------------------------CATCATCGTCTCAAATGAGTC 	79
-------------------------------------------------------CATCATCGTCTCAAATGAG 	80
--------------------------------------------------------ATCATCGTCTCAAATGAGTC 	27
--------------------------------------------------------ATCATCGTCTCAAATGAGTCTTC 	1
--------------------------------------------------------ATCATCGTCTCAAATGAGTCT 	759
--------------------------------------------------------ATCATCGTCTCAAATGAGTCTT 	56
--------------------------------------------------------ATCATCGTCTCAAATGAGT 	22
---------------------------------------------------------TCATCGTCTCAAATGAGTCT 	22
---------------------------------------------------------TCATCGTCTCAAATGAGTCTTC 	57
---------------------------------------------------------TCATCGTCTCAAATGAGTCTT 	68
----------------------------------------------------------CATCGTCTCAAATGAGTCTT 	3
----------------------------------------------------------CATCGTCTCAAATGAGTCT 	1
----------------------------------------------------------CATCGTCTCAAATGAGTCTTCA 	7
----------------------------------------------------------CATCGTCTCAAATGAGTCTTC 	33
-----------------------------------------------------------ATCGTCTCAAATGAGTCTT 	6
-----------------------------------------------------------ATCGTCTCAAATGAGTCTTC 	13


Overlaps with: MNEST032507
Overlaps with miRBase pre-miRNAs: mmu-mir-3071 mmu-mir-136 rno-mir-136
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Mus musculus GSM527277-2110 ACTCCATTTGTTTTGATGATGG ATCATCGTCTCAAATGAGTCT up 3 1


Secondary structure

TGTTGGATGAGCCCTCGGAGGACTCCATTTGTTTTGATGATGGATTCTTAAGCTCCATCATCGTCTCAAATGAGTCTTCAGAGGGTTCTATCATG
-GTTGGATGAGCCCTCGGAGG 	1
--TTGGATGAGCCCTCGGAGG 	1
-----------------GAGGACTCCATTTGTTTTGATGA 	1
------------------AGGACTCCATTTGTTTTGATGATG 	5
------------------AGGACTCCATTTGTTTTGATG 	93
------------------AGGACTCCATTTGTTTTGATGAT 	203
------------------AGGACTCCATTTGTTTTGAT 	19
------------------AGGACTCCATTTGTTTTGATGA 	358
------------------AGGACTCCATTTGTTTTGATGATGG 	1
------------------AGGACTCCATTTGTTTTGA 	29
-------------------GGACTCCATTTGTTTTGAT 	32
-------------------GGACTCCATTTGTTTTGATGA 	565
-------------------GGACTCCATTTGTTTTGATGATG 	17
-------------------GGACTCCATTTGTTTTGATGAT 	1573
-------------------GGACTCCATTTGTTTTGATG 	53
-------------------GGACTCCATTTGTTTTGATGATGG 	15
--------------------GACTCCATTTGTTTTGATGATGGA 	6
--------------------GACTCCATTTGTTTTGATGATG 	30
--------------------GACTCCATTTGTTTTGATGAT 	4
--------------------GACTCCATTTGTTTTGATGATGG 	100
--------------------GACTCCATTTGTTTTGATGA 	5
--------------------GACTCCATTTGTTTTGATG 	1
---------------------ACTCCATTTGTTTTGATGATGG 	17050
---------------------ACTCCATTTGTTTTGATGATGGAT 	4
---------------------ACTCCATTTGTTTTGATGATGGA 	1837
---------------------ACTCCATTTGTTTTGATGA 	8
---------------------ACTCCATTTGTTTTGATGATG 	1642
---------------------ACTCCATTTGTTTTGATGAT 	55
----------------------CTCCATTTGTTTTGATGATGG 	184
----------------------CTCCATTTGTTTTGATGAT 	5
----------------------CTCCATTTGTTTTGATGATGGA 	22
----------------------CTCCATTTGTTTTGATGATG 	6
-----------------------TCCATTTGTTTTGATGATG 	2
-----------------------TCCATTTGTTTTGATGATGG 	64
-----------------------TCCATTTGTTTTGATGATGGA 	29
------------------------CCATTTGTTTTGATGATGGA 	9
------------------------CCATTTGTTTTGATGATGG 	70
-------------------------CATTTGTTTTGATGATGGA 	161
----------------------------------------------------CTCCATCATCGTCTCAAATGAGT 	1
-------------------------------------------------------CATCATCGTCTCAAATGAGTCTT 	12
-------------------------------------------------------CATCATCGTCTCAAATGAGTCT 	1525
-------------------------------------------------------CATCATCGTCTCAAATGAGT 	56
-------------------------------------------------------CATCATCGTCTCAAATGAGTC 	219
-------------------------------------------------------CATCATCGTCTCAAATGAG 	202
--------------------------------------------------------ATCATCGTCTCAAATGAGTCTTC 	3
--------------------------------------------------------ATCATCGTCTCAAATGAGTC 	36
--------------------------------------------------------ATCATCGTCTCAAATGAGT 	74
--------------------------------------------------------ATCATCGTCTCAAATGAGTCTT 	117
--------------------------------------------------------ATCATCGTCTCAAATGAGTCT 	1156
---------------------------------------------------------TCATCGTCTCAAATGAGTCT 	41
---------------------------------------------------------TCATCGTCTCAAATGAGTCTTC 	84
---------------------------------------------------------TCATCGTCTCAAATGAGTC 	3
---------------------------------------------------------TCATCGTCTCAAATGAGTCTTCA 	1
---------------------------------------------------------TCATCGTCTCAAATGAGTCTT 	91
----------------------------------------------------------CATCGTCTCAAATGAGTCTTC 	94
----------------------------------------------------------CATCGTCTCAAATGAGTCTT 	7
----------------------------------------------------------CATCGTCTCAAATGAGTCTTCA 	8
----------------------------------------------------------CATCGTCTCAAATGAGTCT 	10
-----------------------------------------------------------ATCGTCTCAAATGAGTCTT 	6
-----------------------------------------------------------ATCGTCTCAAATGAGTCTTC 	15


Overlaps with: MNEST032507
Overlaps with miRBase pre-miRNAs: mmu-mir-3071 mmu-mir-136 rno-mir-136
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Mus musculus GSM527279-2112 ACTCCATTTGTTTTGATGATGG ATCATCGTCTCAAATGAGTCT up 3 1


Secondary structure

TGTTGGATGAGCCCTCGGAGGACTCCATTTGTTTTGATGATGGATTCTTAAGCTCCATCATCGTCTCAAATGAGTCTTCAGAGGGTTCTATCATG
TGTTGGATGAGCCCTCGGAGG 	1
TGTTGGATGAGCCCTCGGA 	2
--TTGGATGAGCCCTCGGAGG 	2
------------------AGGACTCCATTTGTTTTGATGATG 	1
------------------AGGACTCCATTTGTTTTGATG 	53
------------------AGGACTCCATTTGTTTTGATGA 	219
------------------AGGACTCCATTTGTTTTGATGAT 	142
------------------AGGACTCCATTTGTTTTGATGATGG 	2
------------------AGGACTCCATTTGTTTTGA 	15
------------------AGGACTCCATTTGTTTTGAT 	10
-------------------GGACTCCATTTGTTTTGATGAT 	694
-------------------GGACTCCATTTGTTTTGATG 	31
-------------------GGACTCCATTTGTTTTGAT 	8
-------------------GGACTCCATTTGTTTTGATGA 	226
-------------------GGACTCCATTTGTTTTGATGATGG 	4
-------------------GGACTCCATTTGTTTTGATGATG 	8
--------------------GACTCCATTTGTTTTGATGAT 	9
--------------------GACTCCATTTGTTTTGATGATGGA 	1
--------------------GACTCCATTTGTTTTGATGATGG 	98
--------------------GACTCCATTTGTTTTGATGA 	2
--------------------GACTCCATTTGTTTTGATGATG 	18
---------------------ACTCCATTTGTTTTGATGATGG 	20250
---------------------ACTCCATTTGTTTTGATGATGGAT 	2
---------------------ACTCCATTTGTTTTGATGA 	4
---------------------ACTCCATTTGTTTTGATGATGGATT 	1
---------------------ACTCCATTTGTTTTGATGATG 	1289
---------------------ACTCCATTTGTTTTGATGATGGA 	2459
---------------------ACTCCATTTGTTTTGATGAT 	63
----------------------CTCCATTTGTTTTGATGATG 	8
----------------------CTCCATTTGTTTTGATGATGG 	274
----------------------CTCCATTTGTTTTGATGAT 	2
----------------------CTCCATTTGTTTTGATGATGGA 	52
-----------------------TCCATTTGTTTTGATGATGG 	411
-----------------------TCCATTTGTTTTGATGATGGA 	111
-----------------------TCCATTTGTTTTGATGATG 	10
------------------------CCATTTGTTTTGATGATGGA 	4
------------------------CCATTTGTTTTGATGATGG 	82
-------------------------CATTTGTTTTGATGATGGA 	265
---------------------------TTTGTTTTGATGATGGATTCTT 	1
--------------------------------------------------AGCTCCATCATCGTCTCAAATG 	1
--------------------------------------------------AGCTCCATCATCGTCTCAAAT 	1
----------------------------------------------------CTCCATCATCGTCTCAAATGAGT 	1
-------------------------------------------------------CATCATCGTCTCAAATGAG 	200
-------------------------------------------------------CATCATCGTCTCAAATGAGTCTT 	12
-------------------------------------------------------CATCATCGTCTCAAATGAGTC 	133
-------------------------------------------------------CATCATCGTCTCAAATGAGTCT 	1609
-------------------------------------------------------CATCATCGTCTCAAATGAGT 	26
--------------------------------------------------------ATCATCGTCTCAAATGAGTCTTC 	6
--------------------------------------------------------ATCATCGTCTCAAATGAGTCTT 	255
--------------------------------------------------------ATCATCGTCTCAAATGAGTC 	57
--------------------------------------------------------ATCATCGTCTCAAATGAGTCT 	1605
--------------------------------------------------------ATCATCGTCTCAAATGAGT 	62
---------------------------------------------------------TCATCGTCTCAAATGAGTCTTC 	159
---------------------------------------------------------TCATCGTCTCAAATGAGTCT 	40
---------------------------------------------------------TCATCGTCTCAAATGAGTC 	12
---------------------------------------------------------TCATCGTCTCAAATGAGTCTTCA 	2
---------------------------------------------------------TCATCGTCTCAAATGAGTCTT 	220
----------------------------------------------------------CATCGTCTCAAATGAGTCTTCA 	19
----------------------------------------------------------CATCGTCTCAAATGAGTCTTC 	119
----------------------------------------------------------CATCGTCTCAAATGAGTCTT 	12
----------------------------------------------------------CATCGTCTCAAATGAGTCT 	9
-----------------------------------------------------------ATCGTCTCAAATGAGTCTT 	6
-----------------------------------------------------------ATCGTCTCAAATGAGTCTTC 	16


Overlaps with: MNEST032507
Overlaps with miRBase pre-miRNAs: mmu-mir-3071 mmu-mir-136 rno-mir-136
HuntMi prediction: true miRNA