miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: ACTCTAGCTGCCAAAGGCGCT

selected species: Mus musculus



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM527274-2107 ACTCTAGCTGCCAAAGGCGCT CGCTTTGCTCAGCCAGTGTAG up 5 0


Secondary structure

CCTCGCCACCATCCATGGGTCAGCTATGTGGACTCTAGCTGCCAAAGGCGCTTCTCCTTCTGAACAGAGCGCTTTGCTCAGCCAGTGTAGACATGGCCTGATAAACACTGGAACTTCT
-------------------------------ACTCTAGCTGCCAAAGGCGCT 	35
-------------------------------ACTCTAGCTGCCAAAGGCGC 	26
-------------------------------ACTCTAGCTGCCAAAGGCG 	5
-------------------------------ACTCTAGCTGCCAAAGGCGCTT 	4
---------------------------------TCTAGCTGCCAAAGGCGCTT 	2
---------------------------------TCTAGCTGCCAAAGGCGCT 	13
---------------------------------------------------------------------CGCTTTGCTCAGCCAGTGTAG 	1

Overlaps with: MNEST029096 MNEST031311
Overlaps with miRBase pre-miRNAs: mmu-mir-1251 ppy-mir-1251 ptr-mir-1251 hsa-mir-1251
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM527276 ACTCTAGCTGCCAAAGGCGCT CGCTTTGCTCAGCCAGTGTAG up 5 0


Secondary structure

CCTCGCCACCATCCATGGGTCAGCTATGTGGACTCTAGCTGCCAAAGGCGCTTCTCCTTCTGAACAGAGCGCTTTGCTCAGCCAGTGTAGACATGGCCTGATAAACACTGGAACTTCT
-------------------------------ACTCTAGCTGCCAAAGGCGC 	9
-------------------------------ACTCTAGCTGCCAAAGGCGCT 	18
-------------------------------ACTCTAGCTGCCAAAGGCGCTT 	4
-------------------------------ACTCTAGCTGCCAAAGGCG 	4
--------------------------------CTCTAGCTGCCAAAGGCGC 	1
---------------------------------TCTAGCTGCCAAAGGCGCTT 	3
---------------------------------TCTAGCTGCCAAAGGCGCT 	13

Overlaps with: MNEST029096 MNEST031311
Overlaps with miRBase pre-miRNAs: mmu-mir-1251 ppy-mir-1251 ptr-mir-1251 hsa-mir-1251
HuntMi prediction: true miRNA