miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: ACTGACAGGAGAGCATTTTGA

selected species: Homo sapiens



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Homo sapiens GSM565979-9647 ACTGACAGGAGAGCATTTTGA AAAATGCTCTTCTGTCATTGT down 1 0


Secondary structure

GTGAAAAGGAGAAAGAAGAACTGGACAAAATTAAAATGCTCTTCTGTCATTGTAATAGTTCATATGGGCACTGACAGGAGAGCATTTTGACTTTGTCAAGTGTGTCTGCTACTCATTTA
--------------------------------------------------------------------CACTGACAGGAGAGCATTTTGA 	1
---------------------------------------------------------------------ACTGACAGGAGAGCATTTTGA 	7

Overlaps with: MNEST029422
Overlaps with miRBase pre-miRNAs: hsa-mir-3660
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Homo sapiens GSM494809_Normal_1 ACTGACAGGAGAGCATTTTGA AAAATGCTCTTCTGTCATTGT down 1 0


Secondary structure

GTGAAAAGGAGAAAGAAGAACTGGACAAAATTAAAATGCTCTTCTGTCATTGTAATAGTTCATATGGGCACTGACAGGAGAGCATTTTGACTTTGTCAAGTGTGTCTGCTACTCATTTA
--------------------------------------------------------------------CACTGACAGGAGAGCATTTTGA 	2
---------------------------------------------------------------------ACTGACAGGAGAGCATTTTGA 	7

Overlaps with: MNEST029422
Overlaps with miRBase pre-miRNAs: hsa-mir-3660
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Homo sapiens GSM565978-9532 ACTGACAGGAGAGCATTTTGA AAAATGCTCTTCTGTCATTGT down 1 0


Secondary structure

GTGAAAAGGAGAAAGAAGAACTGGACAAAATTAAAATGCTCTTCTGTCATTGTAATAGTTCATATGGGCACTGACAGGAGAGCATTTTGACTTTGTCAAGTGTGTCTGCTACTCATTTA
--------------------------------------------------------------------CACTGACAGGAGAGCATTTTGA 	3
---------------------------------------------------------------------ACTGACAGGAGAGCATTTTGA 	9

Overlaps with: MNEST029422
Overlaps with miRBase pre-miRNAs: hsa-mir-3660
HuntMi prediction: true miRNA