miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: ACTTGGTAGAACACGTAGTAAG

selected species: Bombyx mori



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Bombyx mori GSM449725_whole_body_clean ACTTGGTAGAACACGTAGTAAG CCCTGCGTGTTCTACCAAGTTA up 4 0


Secondary structure

TGAAGTCTTCTAGTTTAGAAGACTTGGTAGAACACGTAGTAAGCAGGTGGAATCTCCCTGCGTGTTCTACCAAGTTATCTAGGTTGGAAATGCCT
----------------AGAAGACTTGGTAGAACACGTA 	8
----------------AGAAGACTTGGTAGAACACGT 	6
-----------------GAAGACTTGGTAGAACACGTAG 	1
------------------AAGACTTGGTAGAACACGTAGT 	8
------------------AAGACTTGGTAGAACACGTAGTA 	2
------------------AAGACTTGGTAGAACACGTAGTAA 	1
---------------------ACTTGGTAGAACACGTAGTAAG 	728
---------------------ACTTGGTAGAACACGTAGTAA 	576
---------------------ACTTGGTAGAACACGTAGTA 	70
---------------------ACTTGGTAGAACACGTAGTAAGCA 	6
---------------------ACTTGGTAGAACACGTAGT 	3
---------------------ACTTGGTAGAACACGTAGTAAGC 	2
-------------------------------------------------------CCCTGCGTGTTCTACCAAGTTA 	9
--------------------------------------------------------CCTGCGTGTTCTACCAAGTTA 	1


Overlaps with: MNEST035622
Overlaps with miRBase pre-miRNAs: bmo-mir-2758
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Bombyx mori GSM449726_Anterior_silkgland_clean ACTTGGTAGAACACGTAGTAAG CCCTGCGTGTTCTACCAAGTTA up 4 0


Secondary structure

TGAAGTCTTCTAGTTTAGAAGACTTGGTAGAACACGTAGTAAGCAGGTGGAATCTCCCTGCGTGTTCTACCAAGTTATCTAGGTTGGAAATGCCT
---------------TAGAAGACTTGGTAGAACACG 	1
---------------TAGAAGACTTGGTAGAACACGT 	1
----------------AGAAGACTTGGTAGAACACGTA 	82
----------------AGAAGACTTGGTAGAACACGT 	21
----------------AGAAGACTTGGTAGAACACGTAGT 	4
----------------AGAAGACTTGGTAGAACACG 	3
-----------------GAAGACTTGGTAGAACACGTAGT 	2
------------------AAGACTTGGTAGAACACGTAGT 	59
------------------AAGACTTGGTAGAACACGTAGTA 	3
------------------AAGACTTGGTAGAACACGTAGTAA 	3
------------------AAGACTTGGTAGAACACGTAG 	3
-------------------AGACTTGGTAGAACACGTAGTAAG 	2
-------------------AGACTTGGTAGAACACGTAGTA 	1
--------------------GACTTGGTAGAACACGTAGTAA 	7
--------------------GACTTGGTAGAACACGTAGTA 	1
---------------------ACTTGGTAGAACACGTAGTAAG 	14137
---------------------ACTTGGTAGAACACGTAGTAA 	1316
---------------------ACTTGGTAGAACACGTAGTA 	44
---------------------ACTTGGTAGAACACGTAGTAAGC 	4
---------------------ACTTGGTAGAACACGTAGTAAGCAG 	3
---------------------ACTTGGTAGAACACGTAGT 	3
----------------------CTTGGTAGAACACGTAGTAAG 	75
----------------------CTTGGTAGAACACGTAGTAA 	6
-----------------------TTGGTAGAACACGTAGTAAG 	45
-----------------------TTGGTAGAACACGTAGTAA 	4
------------------------TGGTAGAACACGTAGTAAG 	1
-------------------------------------------------------CCCTGCGTGTTCTACCAAGTTA 	101
-------------------------------------------------------CCCTGCGTGTTCTACCAAGTT 	3
-------------------------------------------------------CCCTGCGTGTTCTACCAAGTTAT 	3
-------------------------------------------------------CCCTGCGTGTTCTACCAAGT 	1
--------------------------------------------------------CCTGCGTGTTCTACCAAGTTA 	7
---------------------------------------------------------CTGCGTGTTCTACCAAGTTA 	3
----------------------------------------------------------TGCGTGTTCTACCAAGTTATCT 	4
----------------------------------------------------------TGCGTGTTCTACCAAGTTATC 	2


Overlaps with: MNEST035622
Overlaps with miRBase pre-miRNAs: bmo-mir-2758
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Bombyx mori GSM449727_Posterior_silkgland_clean ACTTGGTAGAACACGTAGTAAG CCCTGCGTGTTCTACCAAGTTA up 4 0


Secondary structure

TGAAGTCTTCTAGTTTAGAAGACTTGGTAGAACACGTAGTAAGCAGGTGGAATCTCCCTGCGTGTTCTACCAAGTTATCTAGGTTGGAAATGCCT
---------------TAGAAGACTTGGTAGAACAC 	1
----------------AGAAGACTTGGTAGAACACGTA 	16
----------------AGAAGACTTGGTAGAACACGT 	7
------------------AAGACTTGGTAGAACACGTAGT 	14
------------------AAGACTTGGTAGAACACGTAG 	1
--------------------GACTTGGTAGAACACGTAGTAA 	1
---------------------ACTTGGTAGAACACGTAGTAAG 	2188
---------------------ACTTGGTAGAACACGTAGTAA 	428
---------------------ACTTGGTAGAACACGTAGTA 	19
---------------------ACTTGGTAGAACACGTAGTAAGCA 	1
----------------------CTTGGTAGAACACGTAGTAAG 	15
-----------------------TTGGTAGAACACGTAGTAAG 	5
-----------------------TTGGTAGAACACGTAGTAA 	1
------------------------TGGTAGAACACGTAGTAAG 	1
-------------------------------------------------------CCCTGCGTGTTCTACCAAGTTA 	32
-------------------------------------------------------CCCTGCGTGTTCTACCAAGTTAT 	1


Overlaps with: MNEST035622
Overlaps with miRBase pre-miRNAs: bmo-mir-2758
HuntMi prediction: true miRNA