miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: ACTTTTCACTGTTTGATTCGT

selected species: Arabidopsis thaliana

5 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Arabidopsis thaliana	GSM304283	ACTTTTCACTGTTTGATTCGT	GAATCAAACAGTAAAAGGTGA	up	1	0

Secondary structure

ATTTTTTTTAGGGTGTGTTAGTAAAATAGTCAATTTTTCAAACTTAATTAGGAAAGTAGTCATTTTATTATTCATAATTTGCAAAGTATTCACTTTTCACTGTTTGATTCGTATACTTGGATTGTACATCATTTTTAGTGTACAAATGTAAAGTGTACGCTGTGTATTTTTTATATACATATGTACACTAAAAGTGGTGTACTATCGAAGTGTACGAATCAAACAGTAAAAGGTGACTATTTTGCAAATTATGAATAGTAAAGTGACTACTTTTCTAATTAAGTTTAAAAAAGTGAGTAGTTTGCAACTTAACCCTTTTTTTTA
----------------------------------------------ATTAGGAAAGTAGTCATTTTA 	1
-----------------------------------------------------------------------------------------TCACTTTTCACTGTTTGATTCGTA 	1
-------------------------------------------------------------------------------------------ACTTTTCACTGTTTGATTCGTA 	2
-------------------------------------------------------------------------------------------ACTTTTCACTGTTTGATTCGT 	10
------------------------------------------------------------------------------------------------------------------------------------------------AATGTAAAGTGTACGCTGTGTATT 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Arabidopsis thaliana	GSM304283	ACTTTTCACTGTTTGATTCGT	GAATCAAACAGTGAAAAGTGA	up	0	0

Secondary structure

TACTATAAAAAAGTTAAGTTGCAAATTAGTCACTTTTTAAAACTTAATTGGAAAAGTAGTCACTTTACTATTCATAATTTGCAAAATAGTTACTTTTCACTGTTTGATTCGTACACTTAGATTGTACACCACTTTTAGTGTACAAATGTATATAAAAAATACACAGCGTACACTTTACATTTGTACACTAAAAGTGATGTACAATCCAAGTGTACGAATCAAACAGTGAAAAGTGACTACTTTGCAAATTATGAATAGTAAAATGACTACTTTCCTAATTAAGTTTGAAAAAATGACTATTTTGCCAATACACCCTAATTTTTA
----------------------------------------------ATTGGAAAAGTAGTCACTTTA 	2
-------------------------------------------------------------------------------------ATAGTTACTTTTCACTGTTTGATT 	1
-------------------------------------------------------------------------------------------ACTTTTCACTGTTTGATTCGTACA 	2
-------------------------------------------------------------------------------------------ACTTTTCACTGTTTGATTCGTA 	2
-------------------------------------------------------------------------------------------ACTTTTCACTGTTTGATTCGT 	10
-------------------------------------------------------------------------------------------------CACTGTTTGATTCGTACACTTAGA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCCAAGTGTACGAATCAAA 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGACTACTTTGCAAATT 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGACTACTTTGCAAATTATGA 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTACTTTCCTAATTAAGTTTGAA 	1

Overlaps with: MNEST048157
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Arabidopsis thaliana	GSM304283	ACTTTTCACTGTTTGATTCGT	GAATCAAACTGTGAAAAGTGA	up	1	0

Secondary structure

GAGTTAATTTGCAAACTAGTCACTTTTTTAAACTTAATTAGAAAAGTAGTCACTTTATTATTCATAATTTGCAAAATAGTTACTTTTCACTGTTTGATTCGTACACTTAGATTGTACATCACTTTTAGTGTACAAATATATATAAAAATACACAGCGTACACTTTACATTTGTATACTAAAAGTGATGTACAATCCAAGTGTACGAATCAAACTGTGAAAAGTGACTATTTTGCAAATTATAAATAGTAAAGTGACTACTTTCTTAATTAAGTTTGAAAAAGTGACTATTTTGCCAACACACC
---------------------------------------------------------------------------ATAGTTACTTTTCACTGTTTGATT 	1
---------------------------------------------------------------------------------ACTTTTCACTGTTTGATTCGTACA 	2
---------------------------------------------------------------------------------ACTTTTCACTGTTTGATTCGTA 	2
---------------------------------------------------------------------------------ACTTTTCACTGTTTGATTCGT 	10
---------------------------------------------------------------------------------------CACTGTTTGATTCGTACACTTAGA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCCAAGTGTACGAATCAAA 	1

Overlaps with: MNEST048297
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Arabidopsis thaliana	GSM304283	ACTTTTCACTGTTTGATTCGT	GAATCAAACAGTGAAAAGTGA	up	0	0

Secondary structure

AGGATGTGTTGGCAAAATAGTCACTTTTTAAACTTAATTAGGAAAGTAGTCACTTTACTATTCATAATTTGCAAAATAGTTACTTTTCACTGTTTGATTCGTACACTTGGATTATACATCACTTTTAGTGTACAAATGTAAAGTGTACGCTGTGTATTTTTATATATATTTGTACACTAAAAGTGGTGTACAATCTAAGTGTACGAATCAAACAGTGAAAAGTGACTATTTTGCAAATTATGAATAGTAAAGTGACTAATTTTCCAATTAAGTTTAAAAAAGTGACTACTTTGCAAATTAACC
-----------------------------------AATTAGGAAAGTAGTCACTTT 	2
------------------------------------ATTAGGAAAGTAGTCACTTTACTA 	2
------------------------------------ATTAGGAAAGTAGTCACTTTAC 	1
---------------------------------------------------------------------------ATAGTTACTTTTCACTGTTTGATT 	1
---------------------------------------------------------------------------------ACTTTTCACTGTTTGATTCGTACA 	2
---------------------------------------------------------------------------------ACTTTTCACTGTTTGATTCGTA 	2
---------------------------------------------------------------------------------ACTTTTCACTGTTTGATTCGT 	10
----------------------------------------------------------------------------------------ACTGTTTGATTCGTACACTTGG 	1
----------------------------------------------------------------------------------------ACTGTTTGATTCGTACACTTG 	1
--------------------------------------------------------------------------------------------------------------------------------------AATGTAAAGTGTACGCTGTGTATT 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGACTATTTTGCAAATTATGA 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGACTATTTTGCAAATTATGA 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGACTACTTTGCAAATT 	1

Overlaps with: MNEST048079
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Arabidopsis thaliana	GSM304283	ACTTTTCACTGTTTGATTCGT	AAATCAAACAGTGAAAAATGA	up	2	0

Secondary structure

AACCTCCCCGATTTTTGAAAGGGTGTGTTGGCAAAATAGTCACTTTTTCAAACTTAATTAGGAAAGTAGTCACTTTACTATTCATAATTTGCAAAACAATCACTTTTCACTGTTTGATTCGTACACTTGGATTGTACATCACTTTTAGTGTACAAATGTAAAGTGTACACTGTGTATTTTTATATATATTTGTACACTAAAAGTGATGTACAATCTAAATTTACAAATCAAACAGTGAAAAATGACTATTTTGCAAATTATGAATAGTAAAGTGACTACTTTTCTAATTAAGTTTGAAAAAGTGACTAATTTACAATTTAACCCTTCTTTAAATCTCAACAAG
----------ATTTTTGAAAGGGTGTGTTGG 	1
------------------AAGGGTGTGTTGGCAAAATAGTCA 	1
-------------------------------------------------------AATTAGGAAAGTAGTCACTTT 	2
--------------------------------------------------------ATTAGGAAAGTAGTCACTTTACTA 	2
--------------------------------------------------------ATTAGGAAAGTAGTCACTTTAC 	1
---------------------------------------------------------------------------------------------------TCACTTTTCACTGTTTGATTCGTA 	1
-----------------------------------------------------------------------------------------------------ACTTTTCACTGTTTGATTCGTACA 	2
-----------------------------------------------------------------------------------------------------ACTTTTCACTGTTTGATTCGTA 	2
-----------------------------------------------------------------------------------------------------ACTTTTCACTGTTTGATTCGT 	10
------------------------------------------------------------------------------------------------------------ACTGTTTGATTCGTACACTTGG 	1
------------------------------------------------------------------------------------------------------------ACTGTTTGATTCGTACACTTG 	1
--------------------------------------------------------------------------------------------------------------------ATTCGTACACTTGGATTGT 	1

Overlaps with: MNEST047742
HuntMi prediction: true miRNA