miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: AGAAGAGAGAGAGTACAGCCC

selected species: Physcomitrella patens

7 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Physcomitrella patens	GSM115097	AGAAGAGAGAGAGTACAGCCC	GCTGTGCTCTCTCTCTTCTGG	up	0	0

Secondary structure

TGTCAGCAATTTACTCACTCATGCTGGGATCAGAAGAGAGAGAGTACAGCCCAAGAGCAACCGCTTAGTTGGAATGGGCTGTGCTCTCTCTCTTCTGGTTCCAACCTGAGTGCATGTCGGTTGTAA
-------------------------------AGAAGAGAGAGAGTACAGC 	1
-------------------------------AGAAGAGAGAGAGTACAGCCC 	21
-------------------------------AGAAGAGAGAGAGTACAGCC 	4
-----------------------------------------------------------------------------GCTGTGCTCTCTCTCTTCTGG 	7
-----------------------------------------------------------------------------GCTGTGCTCTCTCTCTTCT 	1
-----------------------------------------------------------------------------GCTGTGCTCTCTCTCTTCTGGT 	1

Overlaps with: MNEST039507 MNEST051410
Overlaps with miRBase pre-miRNAs: ppt-MIR529e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Physcomitrella patens	GSM115097	AGAAGAGAGAGAGTACAGCCC	GCTGTGCTCTCTCTCTTCTTG	up	0	0

Secondary structure

TTTGCACAATTTTCTCACTCATGCTGGGATCAGAAGAGAGAGAGTACAGCCCAACGGCCGATGTTCAGTTGGAACGGGCTGTGCTCTCTCTCTTCTTGTTCCAACCTGGGTGCATTTCCGTTCTAG
-------------------------------AGAAGAGAGAGAGTACAGC 	1
-------------------------------AGAAGAGAGAGAGTACAGCCC 	21
-------------------------------AGAAGAGAGAGAGTACAGCC 	4
-----------------------------------------------------------------------------GCTGTGCTCTCTCTCTTCTTGT 	1
-----------------------------------------------------------------------------GCTGTGCTCTCTCTCTTCTTG 	7
-----------------------------------------------------------------------------GCTGTGCTCTCTCTCTTCT 	1

Overlaps with: MNEST039508 MNEST051411
Overlaps with miRBase pre-miRNAs: ppt-MIR529f
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Physcomitrella patens	GSM313213	AGAAGAGAGAGAGTACAGCCC	GCTGTGCTCTCTCTCTTCTGG	up	0	0

Secondary structure

TGTCAGCAATTTACTCACTCATGCTGGGATCAGAAGAGAGAGAGTACAGCCCAAGAGCAACCGCTTAGTTGGAATGGGCTGTGCTCTCTCTCTTCTGGTTCCAACCTGAGTGCATGTCGGTTGTAA
------------------------TGGGATCAGAAGAGAGAGAGT 	2
-------------------------------AGAAGAGAGAGAGTACAGCCC 	7
----------------------------------------------------AAGAGCAACCGCTTAGTTGGAATGG 	1
-----------------------------------------------------------------------------GCTGTGCTCTCTCTCTTCTGG 	2

Overlaps with: MNEST039507 MNEST051410
Overlaps with miRBase pre-miRNAs: ppt-MIR529e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Physcomitrella patens	GSM313215	AGAAGAGAGAGAGTACAGCCC	GCTGTGCTCTCTCTCTTCTGG	up	0	0

Secondary structure

TGTCAGCAATTTACTCACTCATGCTGGGATCAGAAGAGAGAGAGTACAGCCCAAGAGCAACCGCTTAGTTGGAATGGGCTGTGCTCTCTCTCTTCTGGTTCCAACCTGAGTGCATGTCGGTTGTAA
-----------------------CTGGGATCAGAAGAGAGAGAGT 	4
------------------------TGGGATCAGAAGAGAGAGAGT 	5
------------------------------CAGAAGAGAGAGAGTACAGCCC 	1
-------------------------------AGAAGAGAGAGAGTACAGCCC 	40
--------------------------------GAAGAGAGAGAGTACAGCCCA 	1
-----------------------------------------------------------------------------GCTGTGCTCTCTCTCTTCTGG 	16
-----------------------------------------------------------------------------GCTGTGCTCTCTCTCTTCTGGT 	4
------------------------------------------------------------------------------CTGTGCTCTCTCTCTTCTGGT 	3
-------------------------------------------------------------------------------TGTGCTCTCTCTCTTCTGG 	1
-------------------------------------------------------------------------------TGTGCTCTCTCTCTTCTGGT 	2
------------------------------------------------------------------------------------TCTCTCTCTTCTGGTTCCAAC 	1

Overlaps with: MNEST039507 MNEST051410
Overlaps with miRBase pre-miRNAs: ppt-MIR529e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Physcomitrella patens	GSM313215	AGAAGAGAGAGAGTACAGCCC	GCTGTGCTCTCTCTCTTCTTG	up	0	0

Secondary structure

TTTGCACAATTTTCTCACTCATGCTGGGATCAGAAGAGAGAGAGTACAGCCCAACGGCCGATGTTCAGTTGGAACGGGCTGTGCTCTCTCTCTTCTTGTTCCAACCTGGGTGCATTTCCGTTCTAG
-----------------------CTGGGATCAGAAGAGAGAGAGT 	4
------------------------TGGGATCAGAAGAGAGAGAGT 	5
------------------------------CAGAAGAGAGAGAGTACAGCCC 	1
-------------------------------AGAAGAGAGAGAGTACAGCCC 	40
--------------------------------GAAGAGAGAGAGTACAGCCCA 	1
-----------------------------------------------------------------------------GCTGTGCTCTCTCTCTTCTTG 	3
-----------------------------------------------------------------------------GCTGTGCTCTCTCTCTTCTTGT 	4

Overlaps with: MNEST039508 MNEST051411
Overlaps with miRBase pre-miRNAs: ppt-MIR529f
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Physcomitrella patens	GSM313214	AGAAGAGAGAGAGTACAGCCC	GCTGTGCTCTCTCTCTTCTGG	up	0	0

Secondary structure

TGTCAGCAATTTACTCACTCATGCTGGGATCAGAAGAGAGAGAGTACAGCCCAAGAGCAACCGCTTAGTTGGAATGGGCTGTGCTCTCTCTCTTCTGGTTCCAACCTGAGTGCATGTCGGTTGTAA
-----------------------CTGGGATCAGAAGAGAGAGAGT 	3
------------------------TGGGATCAGAAGAGAGAGAGT 	9
------------------------TGGGATCAGAAGAGAGAGA 	2
-------------------------------AGAAGAGAGAGAGTACAGCCC 	25
-------------------------------AGAAGAGAGAGAGTACAGCC 	1
--------------------------------GAAGAGAGAGAGTACAGCCCA 	1
--------------------------------GAAGAGAGAGAGTACAGCCC 	2
---------------------------------AAGAGAGAGAGTACAGCCCA 	2
----------------------------------------------------AAGAGCAACCGCTTAGTTGGAATGG 	1
-----------------------------------------------------------------------------GCTGTGCTCTCTCTCTTCTGGT 	4
-----------------------------------------------------------------------------GCTGTGCTCTCTCTCTTCTGG 	20
------------------------------------------------------------------------------CTGTGCTCTCTCTCTTCTGGT 	2
------------------------------------------------------------------------------------TCTCTCTCTTCTGGTTCCAAC 	2

Overlaps with: MNEST039507 MNEST051410
Overlaps with miRBase pre-miRNAs: ppt-MIR529e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Physcomitrella patens	GSM313214	AGAAGAGAGAGAGTACAGCCC	GCTGTGCTCTCTCTCTTCTTG	up	0	0

Secondary structure

TTTGCACAATTTTCTCACTCATGCTGGGATCAGAAGAGAGAGAGTACAGCCCAACGGCCGATGTTCAGTTGGAACGGGCTGTGCTCTCTCTCTTCTTGTTCCAACCTGGGTGCATTTCCGTTCTAG
-----------------------CTGGGATCAGAAGAGAGAGAGT 	3
------------------------TGGGATCAGAAGAGAGAGAGT 	9
------------------------TGGGATCAGAAGAGAGAGA 	2
-------------------------------AGAAGAGAGAGAGTACAGCCC 	25
-------------------------------AGAAGAGAGAGAGTACAGCC 	1
--------------------------------GAAGAGAGAGAGTACAGCCCA 	1
--------------------------------GAAGAGAGAGAGTACAGCCC 	2
---------------------------------AAGAGAGAGAGTACAGCCCA 	2
-----------------------------------------------------------------------------GCTGTGCTCTCTCTCTTCTTG 	11
-----------------------------------------------------------------------------GCTGTGCTCTCTCTCTTCTTGT 	1
------------------------------------------------------------------------------CTGTGCTCTCTCTCTTCTTGT 	2
-------------------------------------------------------------------------------TGTGCTCTCTCTCTTCTTGT 	1

Overlaps with: MNEST039508 MNEST051411
Overlaps with miRBase pre-miRNAs: ppt-MIR529f
HuntMi prediction: true miRNA