miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AGAAGAGAGAGAGTACAGCCT

selected species: Brachypodium distachyon



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Brachypodium distachyon GSM506621-23192 AGAAGAGAGAGAGTACAGCCT GCTGTACCCTCTCTCTTCTTC up 1 0


Secondary structure

CATATCGTCAAGGTTAAAGGGAGAAGAGAGAGAGTACAGCCTTAATTAAGCTCGATCGATCTGTCTTGTATCAAGGCTGTACCCTCTCTCTTCTTCTCTTAGCTTCTTGATGCA
---------------------AGAAGAGAGAGAGTACAGCCT 	188
---------------------AGAAGAGAGAGAGTACAGC 	1
---------------------AGAAGAGAGAGAGTACAGCCTT 	3
---------------------AGAAGAGAGAGAGTACAGCC 	6
----------------------GAAGAGAGAGAGTACAGCCT 	1
-----------------------AAGAGAGAGAGTACAGCCTTA 	2

Overlaps with: MNEST041807
Overlaps with miRBase pre-miRNAs: bdi-MIR529
HuntMi prediction: true miRNA