miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AGAAGAGAGAGAGTACAGCTT

selected species: Oryza sativa



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Oryza sativa GSM571078-22531 AGAAGAGAGAGAGTACAGCTT GCTGTACGCTCCCTCTTCTTC up 2 0


Secondary structure

GCAACTAAGAGAAGGAGATCGATAGACGATCATATCGTGAAGGCTAAATGGAGAAGAGAGAGAGTACAGCTTTGGGCGGTTTAGTTGTTAGATGGTGGAAGTACTTGCGACGCCTACTACCCTTTTCACCAAGGCTGTACGCTCCCTCTTCTTCTCTTAGCTTTTTATGATCCACACACATATATACATGAACTCTCTCTCA
---------------------------------------------------AGAAGAGAGAGAGTACAGCTT 	14
---------------------------------------------------AGAAGAGAGAGAGTACAGCTTTGG 	1
----------------------------------------------------GAAGAGAGAGAGTACAGCTT 	3
-----------------------------------------------------AAGAGAGAGAGTACAGCTTTG 	3
------------------------------------------------------AGAGAGAGAGTACAGCTTTGG 	2

Overlaps with: MNEST042104 MNEST049020
Overlaps with miRBase pre-miRNAs: osa-MIR529b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Oryza sativa GSM571077-22529 AGAAGAGAGAGAGTACAGCTT GCTGTACGCTCCCTCTTCTTC up 2 0


Secondary structure

GCAACTAAGAGAAGGAGATCGATAGACGATCATATCGTGAAGGCTAAATGGAGAAGAGAGAGAGTACAGCTTTGGGCGGTTTAGTTGTTAGATGGTGGAAGTACTTGCGACGCCTACTACCCTTTTCACCAAGGCTGTACGCTCCCTCTTCTTCTCTTAGCTTTTTATGATCCACACACATATATACATGAACTCTCTCTCA
---------------------------------------------------AGAAGAGAGAGAGTACAGCTT 	17
---------------------------------------------------AGAAGAGAGAGAGTACAGCTTT 	1
---------------------------------------------------AGAAGAGAGAGAGTACAGCTTTG 	1
---------------------------------------------------AGAAGAGAGAGAGTACAGCTTTGG 	1
----------------------------------------------------GAAGAGAGAGAGTACAGCTT 	2
-----------------------------------------------------AAGAGAGAGAGTACAGCTTTG 	1

Overlaps with: MNEST042104 MNEST049020
Overlaps with miRBase pre-miRNAs: osa-MIR529b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Oryza sativa GSM693279 AGAAGAGAGAGAGTACAGCTT GCTGTACGCTCCCTCTTCTTC up 2 0


Secondary structure

GCAACTAAGAGAAGGAGATCGATAGACGATCATATCGTGAAGGCTAAATGGAGAAGAGAGAGAGTACAGCTTTGGGCGGTTTAGTTGTTAGATGGTGGAAGTACTTGCGACGCCTACTACCCTTTTCACCAAGGCTGTACGCTCCCTCTTCTTCTCTTAGCTTTTTATGATCCACACACATATATACATGAACTCTCTCTCA
---------------------------------------------------AGAAGAGAGAGAGTACAGCTT 	5
---------------------------------------------------AGAAGAGAGAGAGTACAGCTTTG 	1
-----------------------------------------------------AAGAGAGAGAGTACAGCTTTG 	1

Overlaps with: MNEST042104 MNEST049020
Overlaps with miRBase pre-miRNAs: osa-MIR529b
HuntMi prediction: true miRNA