miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AGAAGCCTTTGTGGGAGAGGA

selected species: Physcomitrella patens



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM313212 AGAAGCCTTTGTGGGAGAGGA CTCTCCCTCAAAGGCTTCCAA down 2 0


Secondary structure

AGTTAAGGGCAGTTGCTTTTTCCTCTCCCTCAAAGGCTTCCAACATGATGTGCGTAAGCCACAACGTTAGAAGCCTTTGTGGGAGAGGAAGAAACAATCGCCTTACAG
----------------TTTTTCCTCTCCCTCAAAGGC 	1
-----------------TTTTCCTCTCCCTCAAAGGCT 	1
---------------------CCTCTCCCTCAAAGGCTTCCA 	2
----------------------CTCTCCCTCAAAGGCTTCC 	6
----------------------CTCTCCCTCAAAGGCTTCCA 	50
----------------------CTCTCCCTCAAAGGCTTCCAAC 	9
----------------------CTCTCCCTCAAAGGCTTCCAA 	215
-----------------------TCTCCCTCAAAGGCTTCCAAC 	5
-----------------------TCTCCCTCAAAGGCTTCCAA 	106
-----------------------TCTCCCTCAAAGGCTTCCA 	22
-------------------------TCCCTCAAAGGCTTCCAAC 	5
-------------------------TCCCTCAAAGGCTTCCAACA 	26
-------------------------TCCCTCAAAGGCTTCCAACAT 	2
--------------------------CCCTCAAAGGCTTCCAACA 	2
-------------------------------------------CATGATGTGCGTAAGCCACAACGTT 	2
-------------------------------------------------------------------TAGAAGCCTTTGTGGGAGAG 	1
--------------------------------------------------------------------AGAAGCCTTTGTGGGAGAGGA 	1056
--------------------------------------------------------------------AGAAGCCTTTGTGGGAGAG 	9
--------------------------------------------------------------------AGAAGCCTTTGTGGGAGAGG 	5
--------------------------------------------------------------------AGAAGCCTTTGTGGGAGAGGAA 	62
---------------------------------------------------------------------GAAGCCTTTGTGGGAGAGGA 	22
---------------------------------------------------------------------GAAGCCTTTGTGGGAGAGGAA 	15
----------------------------------------------------------------------AAGCCTTTGTGGGAGAGGA 	7
----------------------------------------------------------------------AAGCCTTTGTGGGAGAGGAA 	3
--------------------------------------------------------------------------CTTTGTGGGAGAGGAAGAAAC 	2
---------------------------------------------------------------------------TTTGTGGGAGAGGAAGAAAC 	3


Overlaps with: MNEST039493 MNEST039494
Overlaps with miRBase pre-miRNAs: ppt-MIR477a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM313213 AGAAGCCTTTGTGGGAGAGGA CTCTCCCTCAAAGGCTTCCAA down 2 0


Secondary structure

AGTTAAGGGCAGTTGCTTTTTCCTCTCCCTCAAAGGCTTCCAACATGATGTGCGTAAGCCACAACGTTAGAAGCCTTTGTGGGAGAGGAAGAAACAATCGCCTTACAG
----------------TTTTTCCTCTCCCTCAAAGGC 	1
-----------------TTTTCCTCTCCCTCAAAGGCTT 	1
-----------------TTTTCCTCTCCCTCAAAGGCT 	2
---------------------CCTCTCCCTCAAAGGCTTCCA 	1
----------------------CTCTCCCTCAAAGGCTTCC 	6
----------------------CTCTCCCTCAAAGGCTTCCAACA 	1
----------------------CTCTCCCTCAAAGGCTTCCA 	78
----------------------CTCTCCCTCAAAGGCTTCCAAC 	7
----------------------CTCTCCCTCAAAGGCTTCCAA 	251
-----------------------TCTCCCTCAAAGGCTTCCAAC 	10
-----------------------TCTCCCTCAAAGGCTTCCAA 	125
-----------------------TCTCCCTCAAAGGCTTCCA 	28
------------------------CTCCCTCAAAGGCTTCCAA 	1
------------------------CTCCCTCAAAGGCTTCCAACA 	1
-------------------------TCCCTCAAAGGCTTCCAACA 	35
-------------------------TCCCTCAAAGGCTTCCAACAT 	4
-------------------------------------------CATGATGTGCGTAAGCCACAACGTT 	3
------------------------------------------------------------------TTAGAAGCCTTTGTGGGAGA 	1
-------------------------------------------------------------------TAGAAGCCTTTGTGGGAGAGG 	1
--------------------------------------------------------------------AGAAGCCTTTGTGGGAGAGGAAG 	1
--------------------------------------------------------------------AGAAGCCTTTGTGGGAGAGGA 	1150
--------------------------------------------------------------------AGAAGCCTTTGTGGGAGAG 	2
--------------------------------------------------------------------AGAAGCCTTTGTGGGAGAGGAA 	80
--------------------------------------------------------------------AGAAGCCTTTGTGGGAGAGG 	7
---------------------------------------------------------------------GAAGCCTTTGTGGGAGAGGAA 	14
---------------------------------------------------------------------GAAGCCTTTGTGGGAGAGGA 	23
----------------------------------------------------------------------AAGCCTTTGTGGGAGAGGA 	7
----------------------------------------------------------------------AAGCCTTTGTGGGAGAGGAA 	3
--------------------------------------------------------------------------CTTTGTGGGAGAGGAAGAAAC 	2
---------------------------------------------------------------------------TTTGTGGGAGAGGAAGAAACA 	1


Overlaps with: MNEST039493 MNEST039494
Overlaps with miRBase pre-miRNAs: ppt-MIR477a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM313215 AGAAGCCTTTGTGGGAGAGGA CTCTCCCTCAAAGGCTTCCAA down 2 0


Secondary structure

AGTTAAGGGCAGTTGCTTTTTCCTCTCCCTCAAAGGCTTCCAACATGATGTGCGTAAGCCACAACGTTAGAAGCCTTTGTGGGAGAGGAAGAAACAATCGCCTTACAG
-----------------TTTTCCTCTCCCTCAAAGGCT 	1
---------------------CCTCTCCCTCAAAGGCTTCCA 	2
---------------------CCTCTCCCTCAAAGGCTTCCAA 	1
----------------------CTCTCCCTCAAAGGCTTCC 	3
----------------------CTCTCCCTCAAAGGCTTCCA 	27
----------------------CTCTCCCTCAAAGGCTTCCAA 	292
----------------------CTCTCCCTCAAAGGCTTCCAAC 	10
-----------------------TCTCCCTCAAAGGCTTCCA 	2
-----------------------TCTCCCTCAAAGGCTTCCAAC 	9
-----------------------TCTCCCTCAAAGGCTTCCAA 	26
------------------------CTCCCTCAAAGGCTTCCAA 	1
-------------------------------------------------------------------TAGAAGCCTTTGTGGGAGAGG 	9
--------------------------------------------------------------------AGAAGCCTTTGTGGGAGAGGA 	1849
--------------------------------------------------------------------AGAAGCCTTTGTGGGAGAG 	13
--------------------------------------------------------------------AGAAGCCTTTGTGGGAGAGG 	125
--------------------------------------------------------------------AGAAGCCTTTGTGGGAGAGGAA 	138
---------------------------------------------------------------------GAAGCCTTTGTGGGAGAGGAA 	16
---------------------------------------------------------------------GAAGCCTTTGTGGGAGAGGA 	35
----------------------------------------------------------------------AAGCCTTTGTGGGAGAGGAA 	25
----------------------------------------------------------------------AAGCCTTTGTGGGAGAGGA 	16
-----------------------------------------------------------------------AGCCTTTGTGGGAGAGGAA 	1
--------------------------------------------------------------------------CTTTGTGGGAGAGGAAGAAAC 	2
---------------------------------------------------------------------------TTTGTGGGAGAGGAAGAAAC 	1


Overlaps with: MNEST039493 MNEST039494
Overlaps with miRBase pre-miRNAs: ppt-MIR477a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Physcomitrella patens GSM313216 AGAAGCCTTTGTGGGAGAGGA CTCTCCCTCAAAGGCTTCCAA down 2 0


Secondary structure

AGTTAAGGGCAGTTGCTTTTTCCTCTCCCTCAAAGGCTTCCAACATGATGTGCGTAAGCCACAACGTTAGAAGCCTTTGTGGGAGAGGAAGAAACAATCGCCTTACAG
----------------TTTTTCCTCTCCCTCAAAGGC 	1
-----------------TTTTCCTCTCCCTCAAAGGCT 	1
-------------------TTCCTCTCCCTCAAAGGCTTC 	1
----------------------CTCTCCCTCAAAGGCTTCC 	5
----------------------CTCTCCCTCAAAGGCTTCCA 	70
----------------------CTCTCCCTCAAAGGCTTCCAACA 	2
----------------------CTCTCCCTCAAAGGCTTCCAAC 	97
----------------------CTCTCCCTCAAAGGCTTCCAA 	438
-----------------------TCTCCCTCAAAGGCTTCCAAC 	72
-----------------------TCTCCCTCAAAGGCTTCCAA 	124
-----------------------TCTCCCTCAAAGGCTTCCA 	8
-----------------------TCTCCCTCAAAGGCTTCCAACA 	1
------------------------CTCCCTCAAAGGCTTCCAA 	2
-------------------------TCCCTCAAAGGCTTCCAAC 	19
-------------------------TCCCTCAAAGGCTTCCAACA 	10
------------------------------------------------------------------TTAGAAGCCTTTGTGGGAGAG 	1
-------------------------------------------------------------------TAGAAGCCTTTGTGGGAGAGG 	11
--------------------------------------------------------------------AGAAGCCTTTGTGGGAGAGGA 	1596
--------------------------------------------------------------------AGAAGCCTTTGTGGGAGAG 	12
--------------------------------------------------------------------AGAAGCCTTTGTGGGAGAGG 	29
--------------------------------------------------------------------AGAAGCCTTTGTGGGAGAGGAA 	92
---------------------------------------------------------------------GAAGCCTTTGTGGGAGAGGAA 	5
---------------------------------------------------------------------GAAGCCTTTGTGGGAGAGGA 	16
----------------------------------------------------------------------AAGCCTTTGTGGGAGAGGA 	12
----------------------------------------------------------------------AAGCCTTTGTGGGAGAGGAA 	6
-----------------------------------------------------------------------AGCCTTTGTGGGAGAGGAAGA 	1
------------------------------------------------------------------------GCCTTTGTGGGAGAGGAAGAA 	1
--------------------------------------------------------------------------CTTTGTGGGAGAGGAAGAAAC 	4
---------------------------------------------------------------------------TTTGTGGGAGAGGAAGAAAC 	4
---------------------------------------------------------------------------TTTGTGGGAGAGGAAGAAACA 	1


Overlaps with: MNEST039493 MNEST039494
Overlaps with miRBase pre-miRNAs: ppt-MIR477a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Physcomitrella patens GSM313214 AGAAGCCTTTGTGGGAGAGGA CTCTCCCTCAAAGGCTTCCAA down 2 0


Secondary structure

AGTTAAGGGCAGTTGCTTTTTCCTCTCCCTCAAAGGCTTCCAACATGATGTGCGTAAGCCACAACGTTAGAAGCCTTTGTGGGAGAGGAAGAAACAATCGCCTTACAG
-----------------TTTTCCTCTCCCTCAAAGGCT 	3
---------------------CCTCTCCCTCAAAGGCTTC 	1
---------------------CCTCTCCCTCAAAGGCTTCCA 	2
----------------------CTCTCCCTCAAAGGCTTCC 	1
----------------------CTCTCCCTCAAAGGCTTCCA 	100
----------------------CTCTCCCTCAAAGGCTTCCAA 	507
----------------------CTCTCCCTCAAAGGCTTCCAAC 	18
-----------------------TCTCCCTCAAAGGCTTCCA 	18
-----------------------TCTCCCTCAAAGGCTTCCAAC 	15
-----------------------TCTCCCTCAAAGGCTTCCAA 	82
------------------------CTCCCTCAAAGGCTTCCAA 	2
-------------------------TCCCTCAAAGGCTTCCAAC 	1
-------------------------TCCCTCAAAGGCTTCCAACA 	3
-------------------------------------------------------------------TAGAAGCCTTTGTGGGAGAGG 	13
--------------------------------------------------------------------AGAAGCCTTTGTGGGAGAGGA 	2628
--------------------------------------------------------------------AGAAGCCTTTGTGGGAGAG 	27
--------------------------------------------------------------------AGAAGCCTTTGTGGGAGAGGAA 	161
--------------------------------------------------------------------AGAAGCCTTTGTGGGAGAGG 	120
---------------------------------------------------------------------GAAGCCTTTGTGGGAGAGGAA 	37
---------------------------------------------------------------------GAAGCCTTTGTGGGAGAGGA 	37
---------------------------------------------------------------------GAAGCCTTTGTGGGAGAGG 	5
----------------------------------------------------------------------AAGCCTTTGTGGGAGAGGAA 	17
----------------------------------------------------------------------AAGCCTTTGTGGGAGAGGA 	10
-----------------------------------------------------------------------AGCCTTTGTGGGAGAGGAA 	1
-----------------------------------------------------------------------AGCCTTTGTGGGAGAGGAAGA 	1
--------------------------------------------------------------------------CTTTGTGGGAGAGGAAGAAA 	2
---------------------------------------------------------------------------TTTGTGGGAGAGGAAGAAAC 	2


Overlaps with: MNEST039493 MNEST039494
Overlaps with miRBase pre-miRNAs: ppt-MIR477a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Physcomitrella patens GSM313217 AGAAGCCTTTGTGGGAGAGGA CTCTCCCTCAAAGGCTTCCAA down 2 0


Secondary structure

AGTTAAGGGCAGTTGCTTTTTCCTCTCCCTCAAAGGCTTCCAACATGATGTGCGTAAGCCACAACGTTAGAAGCCTTTGTGGGAGAGGAAGAAACAATCGCCTTACAG
---------------CTTTTTCCTCTCCCTCAAAGG 	1
----------------TTTTTCCTCTCCCTCAAAGGC 	2
-----------------TTTTCCTCTCCCTCAAAGGC 	1
-----------------TTTTCCTCTCCCTCAAAGGCT 	2
---------------------CCTCTCCCTCAAAGGCTTCCA 	1
---------------------CCTCTCCCTCAAAGGCTTCCAAC 	1
----------------------CTCTCCCTCAAAGGCTTCCAA 	381
----------------------CTCTCCCTCAAAGGCTTCCA 	63
----------------------CTCTCCCTCAAAGGCTTCC 	4
----------------------CTCTCCCTCAAAGGCTTCCAACA 	1
----------------------CTCTCCCTCAAAGGCTTCCAAC 	70
-----------------------TCTCCCTCAAAGGCTTCCAAC 	71
-----------------------TCTCCCTCAAAGGCTTCCAA 	132
-----------------------TCTCCCTCAAAGGCTTCCA 	11
------------------------CTCCCTCAAAGGCTTCCAA 	2
-------------------------TCCCTCAAAGGCTTCCAAC 	6
-------------------------TCCCTCAAAGGCTTCCAACA 	7
--------------------------CCCTCAAAGGCTTCCAACA 	1
-------------------------------------------------------------------TAGAAGCCTTTGTGGGAGAGG 	2
--------------------------------------------------------------------AGAAGCCTTTGTGGGAGAGGAAG 	1
--------------------------------------------------------------------AGAAGCCTTTGTGGGAGAGGA 	1567
--------------------------------------------------------------------AGAAGCCTTTGTGGGAGAG 	17
--------------------------------------------------------------------AGAAGCCTTTGTGGGAGAGGAA 	81
--------------------------------------------------------------------AGAAGCCTTTGTGGGAGAGG 	24
---------------------------------------------------------------------GAAGCCTTTGTGGGAGAGGA 	12
---------------------------------------------------------------------GAAGCCTTTGTGGGAGAGGAA 	8
----------------------------------------------------------------------AAGCCTTTGTGGGAGAGGA 	6
----------------------------------------------------------------------AAGCCTTTGTGGGAGAGGAA 	6
--------------------------------------------------------------------------CTTTGTGGGAGAGGAAGAAAC 	2
---------------------------------------------------------------------------TTTGTGGGAGAGGAAGAAA 	1
---------------------------------------------------------------------------TTTGTGGGAGAGGAAGAAAC 	1
---------------------------------------------------------------------------TTTGTGGGAGAGGAAGAAACA 	1


Overlaps with: MNEST039493 MNEST039494
Overlaps with miRBase pre-miRNAs: ppt-MIR477a
HuntMi prediction: true miRNA