miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AGAAGGATCTGCAACATAGAC

selected species: Physcomitrella patens



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM115097 AGAAGGATCTGCAACATAGAC ATATGTTGCAGATTCTTCATT down 2 0


Secondary structure

TTGAACAGGTTGCCTCTCTCGTATATGTTGCAGATTCTTCATTTGTCTAGCTGATCAACTATAGTATTGATTTGTCTAGCTGATCAACTATAGTATTGACTGTCATGCAAAAGAAGGATCTGCAACATAGACAAGAATAGGTGATCGATTT
----------------------ATATGTTGCAGATTCTTCATTT 	1
----------------------ATATGTTGCAGATTCTTCATT 	61
----------------------ATATGTTGCAGATTCTTCAT 	11
-----------------------TATGTTGCAGATTCTTCATTT 	12
-----------------------TATGTTGCAGATTCTTCATT 	5
-------------------------TGTTGCAGATTCTTCATTT 	1
--------------------------------------------------------------------------------------------------------------AAGAAGGATCTGCAACATAGAC 	1
---------------------------------------------------------------------------------------------------------------AGAAGGATCTGCAACATAGACA 	1
---------------------------------------------------------------------------------------------------------------AGAAGGATCTGCAACATAGAC 	476
---------------------------------------------------------------------------------------------------------------AGAAGGATCTGCAACATAGA 	73
---------------------------------------------------------------------------------------------------------------AGAAGGATCTGCAACATAG 	2
----------------------------------------------------------------------------------------------------------------GAAGGATCTGCAACATAGAC 	4
----------------------------------------------------------------------------------------------------------------GAAGGATCTGCAACATAGA 	1

Overlaps with: MNEST039563 MNEST039564
Overlaps with miRBase pre-miRNAs: ppt-MIR902j
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM313215 AGAAGGATCTGCAACATAGAC ATATGTTGCAGATTCTTCATT down 2 0


Secondary structure

TTGAACAGGTTGCCTCTCTCGTATATGTTGCAGATTCTTCATTTGTCTAGCTGATCAACTATAGTATTGATTTGTCTAGCTGATCAACTATAGTATTGACTGTCATGCAAAAGAAGGATCTGCAACATAGACAAGAATAGGTGATCGATTT
----------------------ATATGTTGCAGATTCTTCATT 	9
-----------------------TATGTTGCAGATTCTTCATTT 	4
---------------------------------------------------------------------------------------------------------------AGAAGGATCTGCAACATAGAC 	15
---------------------------------------------------------------------------------------------------------------AGAAGGATCTGCAACATAGA 	7

Overlaps with: MNEST039563 MNEST039564
Overlaps with miRBase pre-miRNAs: ppt-MIR902j
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM115096 AGAAGGATCTGCAACATAGAC ATATGTTGCAGATTCTTCATT down 2 0


Secondary structure

TTGAACAGGTTGCCTCTCTCGTATATGTTGCAGATTCTTCATTTGTCTAGCTGATCAACTATAGTATTGATTTGTCTAGCTGATCAACTATAGTATTGACTGTCATGCAAAAGAAGGATCTGCAACATAGACAAGAATAGGTGATCGATTT
----------------------ATATGTTGCAGATTCTTCATTT 	1
----------------------ATATGTTGCAGATTCTTCATT 	2
-----------------------TATGTTGCAGATTCTTCATT 	2
---------------------------------------------------------------------------------------------------------------AGAAGGATCTGCAACATAGAC 	12
---------------------------------------------------------------------------------------------------------------AGAAGGATCTGCAACATAGA 	4

Overlaps with: MNEST039563 MNEST039564
Overlaps with miRBase pre-miRNAs: ppt-MIR902j
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Physcomitrella patens GSM313216 AGAAGGATCTGCAACATAGAC ATATGTTGCAGATTCTTCATT down 2 0


Secondary structure

TTGAACAGGTTGCCTCTCTCGTATATGTTGCAGATTCTTCATTTGTCTAGCTGATCAACTATAGTATTGATTTGTCTAGCTGATCAACTATAGTATTGACTGTCATGCAAAAGAAGGATCTGCAACATAGACAAGAATAGGTGATCGATTT
----------------------ATATGTTGCAGATTCTTCATT 	16
----------------------ATATGTTGCAGATTCTTCAT 	6
-----------------------TATGTTGCAGATTCTTCATT 	2
------------------------ATGTTGCAGATTCTTCATT 	1
---------------------------------------------------------------------------------------------------------------AGAAGGATCTGCAACATAG 	1
---------------------------------------------------------------------------------------------------------------AGAAGGATCTGCAACATAGA 	8
---------------------------------------------------------------------------------------------------------------AGAAGGATCTGCAACATAGAC 	50

Overlaps with: MNEST039563 MNEST039564
Overlaps with miRBase pre-miRNAs: ppt-MIR902j
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Physcomitrella patens GSM313214 AGAAGGATCTGCAACATAGAC ATATGTTGCAGATTCTTCATT down 2 0


Secondary structure

TTGAACAGGTTGCCTCTCTCGTATATGTTGCAGATTCTTCATTTGTCTAGCTGATCAACTATAGTATTGATTTGTCTAGCTGATCAACTATAGTATTGACTGTCATGCAAAAGAAGGATCTGCAACATAGACAAGAATAGGTGATCGATTT
----------------------ATATGTTGCAGATTCTTCATTT 	1
----------------------ATATGTTGCAGATTCTTCATT 	14
-----------------------TATGTTGCAGATTCTTCATT 	5
-----------------------TATGTTGCAGATTCTTCAT 	1
-----------------------TATGTTGCAGATTCTTCATTT 	7
------------------------ATGTTGCAGATTCTTCATTT 	1
---------------------------------------------------------------------------------------------------------------AGAAGGATCTGCAACATAGAC 	35
---------------------------------------------------------------------------------------------------------------AGAAGGATCTGCAACATAGA 	8

Overlaps with: MNEST039563 MNEST039564
Overlaps with miRBase pre-miRNAs: ppt-MIR902j
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Physcomitrella patens GSM313217 AGAAGGATCTGCAACATAGAC ATATGTTGCAGATTCTTCATT down 2 0


Secondary structure

TTGAACAGGTTGCCTCTCTCGTATATGTTGCAGATTCTTCATTTGTCTAGCTGATCAACTATAGTATTGATTTGTCTAGCTGATCAACTATAGTATTGACTGTCATGCAAAAGAAGGATCTGCAACATAGACAAGAATAGGTGATCGATTT
----------------------ATATGTTGCAGATTCTTCATT 	20
----------------------ATATGTTGCAGATTCTTCAT 	5
-----------------------TATGTTGCAGATTCTTCATT 	1
-----------------------TATGTTGCAGATTCTTCATTT 	2
--------------------------------------------------------------------------------------------------------------AAGAAGGATCTGCAACATAGA 	1
---------------------------------------------------------------------------------------------------------------AGAAGGATCTGCAACATAGACA 	1
---------------------------------------------------------------------------------------------------------------AGAAGGATCTGCAACATAGAC 	47
---------------------------------------------------------------------------------------------------------------AGAAGGATCTGCAACATAGA 	14

Overlaps with: MNEST039563 MNEST039564
Overlaps with miRBase pre-miRNAs: ppt-MIR902j
HuntMi prediction: true miRNA