miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AGAAGGATCTGCAACATATAC

selected species: Physcomitrella patens



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM115095 AGAAGGATCTGCAACATATAC CTATGTTGCAGATTCTTCATT down 2 0


Secondary structure

CTGCACTGGTTATCTCTCTCGTCTATGTTGCAGATTCTTCATTTGCAAAACTGATCATAGAAGTTAAGTGAAAGAAGGATCTGCAACATATACAAGAACGGATAATCGGATG
----------------------CTATGTTGCAGATTCTTCATT 	3
-----------------------TATGTTGCAGATTCTTCATTT 	1
------------------------------------------------------------------------AGAAGGATCTGCAACATATAC 	5

Overlaps with: MNEST039567 MNEST039568
Overlaps with miRBase pre-miRNAs: ppt-MIR902l
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM313216 AGAAGGATCTGCAACATATAC CTATGTTGCAGATTCTTCATT down 2 0


Secondary structure

CTGCACTGGTTATCTCTCTCGTCTATGTTGCAGATTCTTCATTTGCAAAACTGATCATAGAAGTTAAGTGAAAGAAGGATCTGCAACATATACAAGAACGGATAATCGGATG
----------------------CTATGTTGCAGATTCTTCAT 	1
----------------------CTATGTTGCAGATTCTTCATT 	1
-----------------------TATGTTGCAGATTCTTCATT 	2
------------------------ATGTTGCAGATTCTTCATT 	1
------------------------------------------------------------------------AGAAGGATCTGCAACATATACA 	1
------------------------------------------------------------------------AGAAGGATCTGCAACATATA 	2
------------------------------------------------------------------------AGAAGGATCTGCAACATATAC 	6

Overlaps with: MNEST039567 MNEST039568
Overlaps with miRBase pre-miRNAs: ppt-MIR902l
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM313217 AGAAGGATCTGCAACATATAC CTATGTTGCAGATTCTTCATT down 2 0


Secondary structure

CTGCACTGGTTATCTCTCTCGTCTATGTTGCAGATTCTTCATTTGCAAAACTGATCATAGAAGTTAAGTGAAAGAAGGATCTGCAACATATACAAGAACGGATAATCGGATG
----------------------CTATGTTGCAGATTCTTCATT 	3
-----------------------TATGTTGCAGATTCTTCATT 	1
-----------------------TATGTTGCAGATTCTTCATTT 	2
------------------------------------------------------------------------AGAAGGATCTGCAACATATAC 	6

Overlaps with: MNEST039567 MNEST039568
Overlaps with miRBase pre-miRNAs: ppt-MIR902l
HuntMi prediction: true miRNA