miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AGAAGGGGTGAAATTTAAACGT

selected species: Homo sapiens



12 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Homo sapiens GSM651905 AGAAGGGGTGAAATTTAAACGT GTTTAAATTACACTCCTTCTGC down 1 0


Secondary structure

ACGCCCAGCCAGGATCACAGACGTTTAAATTACACTCCTTCTGCTGTGCCTTACAGCAGTAGAAGGGGTGAAATTTAAACGTCTGTGATCCTGGGGTTGTT
-----------------------------------------------------------TAGAAGGGGTGAAATTTAAACG 	5
-----------------------------------------------------------TAGAAGGGGTGAAATTTAAACGT 	3
------------------------------------------------------------AGAAGGGGTGAAATTTAAACGT 	21
------------------------------------------------------------AGAAGGGGTGAAATTTAAACG 	4
------------------------------------------------------------AGAAGGGGTGAAATTTAAAC 	3

Overlaps with: MNEST029335 MNEST029336 MNEST029337
Overlaps with miRBase pre-miRNAs: hsa-mir-3179-1 hsa-mir-3179-3 hsa-mir-3179-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Homo sapiens GSM569185 AGAAGGGGTGAAATTTAAACGT GTTTAAATTACACTCCTTCTGC down 1 0


Secondary structure

ACGCCCAGCCAGGATCACAGACGTTTAAATTACACTCCTTCTGCTGTGCCTTACAGCAGTAGAAGGGGTGAAATTTAAACGTCTGTGATCCTGGGGTTGTT
-----------------------------------------------------------TAGAAGGGGTGAAATTTAAACGT 	7
-----------------------------------------------------------TAGAAGGGGTGAAATTTAAACG 	7
------------------------------------------------------------AGAAGGGGTGAAATTTAAACG 	3
------------------------------------------------------------AGAAGGGGTGAAATTTAAACGT 	17
------------------------------------------------------------AGAAGGGGTGAAATTTAAACGTC 	1

Overlaps with: MNEST029335 MNEST029336 MNEST029337
Overlaps with miRBase pre-miRNAs: hsa-mir-3179-1 hsa-mir-3179-3 hsa-mir-3179-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Homo sapiens GSM565979-9647 AGAAGGGGTGAAATTTAAACGT GTTTAAATTACACTCCTTCTGC down 1 0


Secondary structure

ACGCCCAGCCAGGATCACAGACGTTTAAATTACACTCCTTCTGCTGTGCCTTACAGCAGTAGAAGGGGTGAAATTTAAACGTCTGTGATCCTGGGGTTGTT
-----------------------------------------------------------TAGAAGGGGTGAAATTTAAACG 	3
-----------------------------------------------------------TAGAAGGGGTGAAATTTAAACGT 	2
------------------------------------------------------------AGAAGGGGTGAAATTTAAACGT 	5
------------------------------------------------------------AGAAGGGGTGAAATTTAAACG 	1

Overlaps with: MNEST029335 MNEST029336 MNEST029337
Overlaps with miRBase pre-miRNAs: hsa-mir-3179-1 hsa-mir-3179-3 hsa-mir-3179-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Homo sapiens GSM569190 AGAAGGGGTGAAATTTAAACGT GTTTAAATTACACTCCTTCTGC down 1 0


Secondary structure

ACGCCCAGCCAGGATCACAGACGTTTAAATTACACTCCTTCTGCTGTGCCTTACAGCAGTAGAAGGGGTGAAATTTAAACGTCTGTGATCCTGGGGTTGTT
-----------------------------------------------------------TAGAAGGGGTGAAATTTAAACGT 	1
------------------------------------------------------------AGAAGGGGTGAAATTTAAACG 	2
------------------------------------------------------------AGAAGGGGTGAAATTTAAACGT 	14

Overlaps with: MNEST029335 MNEST029336 MNEST029337
Overlaps with miRBase pre-miRNAs: hsa-mir-3179-1 hsa-mir-3179-3 hsa-mir-3179-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Homo sapiens GSM565978-9532 AGAAGGGGTGAAATTTAAACGT GTTTAAATTACACTCCTTCTGC down 1 0


Secondary structure

ACGCCCAGCCAGGATCACAGACGTTTAAATTACACTCCTTCTGCTGTGCCTTACAGCAGTAGAAGGGGTGAAATTTAAACGTCTGTGATCCTGGGGTTGTT
-----------------------------------------------------------TAGAAGGGGTGAAATTTAAACGT 	8
-----------------------------------------------------------TAGAAGGGGTGAAATTTAAACG 	2
------------------------------------------------------------AGAAGGGGTGAAATTTAAACGT 	10
--------------------------------------------------------------AAGGGGTGAAATTTAAACGTCT 	1

Overlaps with: MNEST029335 MNEST029336 MNEST029337
Overlaps with miRBase pre-miRNAs: hsa-mir-3179-1 hsa-mir-3179-3 hsa-mir-3179-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Homo sapiens GSM569186 AGAAGGGGTGAAATTTAAACGT GTTTAAATTACACTCCTTCTGC down 1 0


Secondary structure

ACGCCCAGCCAGGATCACAGACGTTTAAATTACACTCCTTCTGCTGTGCCTTACAGCAGTAGAAGGGGTGAAATTTAAACGTCTGTGATCCTGGGGTTGTT
----------------------GTTTAAATTACACTCCTTCTG 	1
-----------------------------------------------------------TAGAAGGGGTGAAATTTAAACGT 	10
-----------------------------------------------------------TAGAAGGGGTGAAATTTAA 	1
-----------------------------------------------------------TAGAAGGGGTGAAATTTAAACG 	4
------------------------------------------------------------AGAAGGGGTGAAATTTAAACGT 	19
------------------------------------------------------------AGAAGGGGTGAAATTTAAACG 	4

Overlaps with: MNEST029335 MNEST029336 MNEST029337
Overlaps with miRBase pre-miRNAs: hsa-mir-3179-1 hsa-mir-3179-3 hsa-mir-3179-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Homo sapiens GSM569188 AGAAGGGGTGAAATTTAAACGT GTTTAAATTACACTCCTTCTGC down 1 0


Secondary structure

ACGCCCAGCCAGGATCACAGACGTTTAAATTACACTCCTTCTGCTGTGCCTTACAGCAGTAGAAGGGGTGAAATTTAAACGTCTGTGATCCTGGGGTTGTT
-----------------------------------------------------------TAGAAGGGGTGAAATTTAAACG 	4
------------------------------------------------------------AGAAGGGGTGAAATTTAAACG 	9
------------------------------------------------------------AGAAGGGGTGAAATTTAAACGT 	14

Overlaps with: MNEST029335 MNEST029336 MNEST029337
Overlaps with miRBase pre-miRNAs: hsa-mir-3179-1 hsa-mir-3179-3 hsa-mir-3179-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Homo sapiens GSM569187 AGAAGGGGTGAAATTTAAACGT GTTTAAATTACACTCCTTCTGC down 1 0


Secondary structure

ACGCCCAGCCAGGATCACAGACGTTTAAATTACACTCCTTCTGCTGTGCCTTACAGCAGTAGAAGGGGTGAAATTTAAACGTCTGTGATCCTGGGGTTGTT
-----------------------TTTAAATTACACTCCTTCTGCT 	1
-----------------------------------------------------------TAGAAGGGGTGAAATTTAAACGT 	3
-----------------------------------------------------------TAGAAGGGGTGAAATTTAAACG 	1
------------------------------------------------------------AGAAGGGGTGAAATTTAAACGTC 	1
------------------------------------------------------------AGAAGGGGTGAAATTTAAACG 	4
------------------------------------------------------------AGAAGGGGTGAAATTTAAACGT 	17

Overlaps with: MNEST029335 MNEST029336 MNEST029337
Overlaps with miRBase pre-miRNAs: hsa-mir-3179-1 hsa-mir-3179-3 hsa-mir-3179-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Homo sapiens GSM494811_K562 AGAAGGGGTGAAATTTAAACGT GTTTAAATTACACTCCTTCTGC down 1 0


Secondary structure

ACGCCCAGCCAGGATCACAGACGTTTAAATTACACTCCTTCTGCTGTGCCTTACAGCAGTAGAAGGGGTGAAATTTAAACGTCTGTGATCCTGGGGTTGTT
-----------------------------------------------------------TAGAAGGGGTGAAATTTAAACGT 	4
-----------------------------------------------------------TAGAAGGGGTGAAATTTAAACG 	2
------------------------------------------------------------AGAAGGGGTGAAATTTAAACGT 	15
------------------------------------------------------------AGAAGGGGTGAAATTTAAAC 	1

Overlaps with: MNEST029335 MNEST029336 MNEST029337
Overlaps with miRBase pre-miRNAs: hsa-mir-3179-1 hsa-mir-3179-3 hsa-mir-3179-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Homo sapiens GSM569189 AGAAGGGGTGAAATTTAAACGT GTTTAAATTACACTCCTTCTGC down 1 0


Secondary structure

ACGCCCAGCCAGGATCACAGACGTTTAAATTACACTCCTTCTGCTGTGCCTTACAGCAGTAGAAGGGGTGAAATTTAAACGTCTGTGATCCTGGGGTTGTT
-----------------------------------------------------------TAGAAGGGGTGAAATTTAAACGT 	2
-----------------------------------------------------------TAGAAGGGGTGAAATTTAAACG 	2
------------------------------------------------------------AGAAGGGGTGAAATTTAAACGT 	6

Overlaps with: MNEST029335 MNEST029336 MNEST029337
Overlaps with miRBase pre-miRNAs: hsa-mir-3179-1 hsa-mir-3179-3 hsa-mir-3179-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Homo sapiens GSM494812_HL60 AGAAGGGGTGAAATTTAAACGT GTTTAAATTACACTCCTTCTGC down 1 0


Secondary structure

ACGCCCAGCCAGGATCACAGACGTTTAAATTACACTCCTTCTGCTGTGCCTTACAGCAGTAGAAGGGGTGAAATTTAAACGTCTGTGATCCTGGGGTTGTT
----------------------GTTTAAATTACACTCCTTCTGC 	1
-----------------------------------------------------------TAGAAGGGGTGAAATTTAAACGT 	3
------------------------------------------------------------AGAAGGGGTGAAATTTAAACGT 	23

Overlaps with: MNEST029335 MNEST029336 MNEST029337
Overlaps with miRBase pre-miRNAs: hsa-mir-3179-1 hsa-mir-3179-3 hsa-mir-3179-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Homo sapiens GSM531975 AGAAGGGGTGAAATTTAAACGT GTTTAAATTACACTCCTTCTGC down 1 0


Secondary structure

ACGCCCAGCCAGGATCACAGACGTTTAAATTACACTCCTTCTGCTGTGCCTTACAGCAGTAGAAGGGGTGAAATTTAAACGTCTGTGATCCTGGGGTTGTT
-----------------------------------------------------------TAGAAGGGGTGAAATTTAAACGT 	3
-----------------------------------------------------------TAGAAGGGGTGAAATTTAAACG 	2
------------------------------------------------------------AGAAGGGGTGAAATTTAAACGT 	5
------------------------------------------------------------AGAAGGGGTGAAATTTAAACG 	2

Overlaps with: MNEST029335 MNEST029336 MNEST029337
Overlaps with miRBase pre-miRNAs: hsa-mir-3179-1 hsa-mir-3179-3 hsa-mir-3179-2
HuntMi prediction: true miRNA