miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: AGAATCTTGATGATGCTGCAG

selected species: Arabidopsis thaliana

8 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Arabidopsis thaliana	GSM415786-5994	AGAATCTTGATGATGCTGCAG	GCAACATCTTCAAGATTCAGA	down	3	0

Secondary structure

TCTGAAGTTAGTGGCAGTCATTGTTTGCTATTGCAACATCTTCAAGATTCAGAAATCAGATTCTCTTATGGGTTTTCTTTTGAGCCTTTATTTTTTGGTTTGAGAATCTTGATGATGCTGCAGCGGCAATTAAATGGCTTACTTATCTAGGG
--------------------------------GCAACATCTTCAAGATTCAGA 	18
--------------------------------GCAACATCTTCAAGATTCAG 	18
----------------------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGC 	1
-----------------------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCA 	2
------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAGC 	1
------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAG 	1376
------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	244
------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGC 	24
-------------------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCAG 	16
-------------------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCA 	5
------------------------------------------------------------------------------------------------------------TTGATGATGCTGCAGCGGCAA 	1
--------------------------------------------------------------------------------------------------------------GATGATGCTGCAGCGGCAATTAAA 	1

Overlaps with: MNEST040066 MNEST046987
Overlaps with miRBase pre-miRNAs: ath-MIR172d
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Arabidopsis thaliana	GSM415786-5994	AGAATCTTGATGATGCTGCAG	GGAGCATCATCAAGATTCACA	down	2	0

Secondary structure

CAACCAGCTACTGTTCGCTGTTGGAGCATCATCAAGATTCACAAATCATCAAGTATTCGTGTAAATAAACCCATTTATGATTAGATTTTTGATGTATGTATGAGAATCTTGATGATGCTGCAGCTGCAATCAGTGGCTTACA
----------------------GGAGCATCATCAAGATTCACA 	8
----------------------GGAGCATCATCAAGATTCAC 	8
----------------------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGC 	1
-----------------------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCA 	2
------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAGC 	1
------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAG 	1376
------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	244
------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGC 	24
-------------------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCAG 	16
-------------------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCA 	5
----------------------------------------------------------------------------------------------------------TCTTGATGATGCTGCAGCTGC 	10
------------------------------------------------------------------------------------------------------------TTGATGATGCTGCAGCTGCAA 	8
----------------------------------------------------------------------------------------------------------------TGATGCTGCAGCTGCAATCAG 	2

Overlaps with: MNEST047545
Overlaps with miRBase pre-miRNAs: ath-MIR172c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Arabidopsis thaliana	GSM415785	AGAATCTTGATGATGCTGCAG	GCAACATCTTCAAGATTCAGA	down	3	0

Secondary structure

TCTGAAGTTAGTGGCAGTCATTGTTTGCTATTGCAACATCTTCAAGATTCAGAAATCAGATTCTCTTATGGGTTTTCTTTTGAGCCTTTATTTTTTGGTTTGAGAATCTTGATGATGCTGCAGCGGCAATTAAATGGCTTACTTATCTAGGG
--------------------------------GCAACATCTTCAAGATTCAGA 	1
--------------------------------GCAACATCTTCAAGATTCAG 	1
----------------------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGC 	1
-----------------------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCA 	1
------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAGC 	2
------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAG 	736
------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	38
------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGC 	4
-------------------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCAG 	12
-------------------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCA 	1
----------------------------------------------------------------------------------------------------------------------TGCAGCGGCAATTAAATGGCTTAC 	1

Overlaps with: MNEST040066 MNEST046987
Overlaps with miRBase pre-miRNAs: ath-MIR172d
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Arabidopsis thaliana	GSM415785	AGAATCTTGATGATGCTGCAG	GGAGCATCATCAAGATTCACA	down	2	0

Secondary structure

CAACCAGCTACTGTTCGCTGTTGGAGCATCATCAAGATTCACAAATCATCAAGTATTCGTGTAAATAAACCCATTTATGATTAGATTTTTGATGTATGTATGAGAATCTTGATGATGCTGCAGCTGCAATCAGTGGCTTACA
----------------------GGAGCATCATCAAGATTCACA 	3
----------------------GGAGCATCATCAAGATTCA 	1
----------------------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGC 	1
-----------------------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCA 	1
------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAGC 	2
------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAG 	736
------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	38
------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGC 	4
-------------------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCAG 	12
-------------------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCA 	1

Overlaps with: MNEST047545
Overlaps with miRBase pre-miRNAs: ath-MIR172c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Arabidopsis thaliana	GSM304283	AGAATCTTGATGATGCTGCAG	GCAACATCTTCAAGATTCAGA	down	3	0

Secondary structure

TCTGAAGTTAGTGGCAGTCATTGTTTGCTATTGCAACATCTTCAAGATTCAGAAATCAGATTCTCTTATGGGTTTTCTTTTGAGCCTTTATTTTTTGGTTTGAGAATCTTGATGATGCTGCAGCGGCAATTAAATGGCTTACTTATCTAGGG
----------------------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGC 	1
------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAG 	34
------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	19
------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGC 	13

Overlaps with: MNEST040066 MNEST046987
Overlaps with miRBase pre-miRNAs: ath-MIR172d
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Arabidopsis thaliana	GSM304283	AGAATCTTGATGATGCTGCAG	GGAGCATCATCAAGATTCACA	down	2	0

Secondary structure

CAACCAGCTACTGTTCGCTGTTGGAGCATCATCAAGATTCACAAATCATCAAGTATTCGTGTAAATAAACCCATTTATGATTAGATTTTTGATGTATGTATGAGAATCTTGATGATGCTGCAGCTGCAATCAGTGGCTTACA
---------------------------------------------------------------------------------------------------ATGAGAATCTTGATGATGCTG 	1
----------------------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGC 	1
------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAG 	34
------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	19
------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGC 	13

Overlaps with: MNEST047545
Overlaps with miRBase pre-miRNAs: ath-MIR172c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Arabidopsis thaliana	GSM277608	AGAATCTTGATGATGCTGCAG	GCAACATCTTCAAGATTCAGA	down	3	0

Secondary structure

TCTGAAGTTAGTGGCAGTCATTGTTTGCTATTGCAACATCTTCAAGATTCAGAAATCAGATTCTCTTATGGGTTTTCTTTTGAGCCTTTATTTTTTGGTTTGAGAATCTTGATGATGCTGCAGCGGCAATTAAATGGCTTACTTATCTAGGG
--------------------------------GCAACATCTTCAAGATTCAG 	3
----------------------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGC 	5
-----------------------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCA 	6
------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAG 	1133
------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGC 	10

Overlaps with: MNEST040066 MNEST046987
Overlaps with miRBase pre-miRNAs: ath-MIR172d
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Arabidopsis thaliana	GSM277608	AGAATCTTGATGATGCTGCAG	GGAGCATCATCAAGATTCACA	down	2	0

Secondary structure

CAACCAGCTACTGTTCGCTGTTGGAGCATCATCAAGATTCACAAATCATCAAGTATTCGTGTAAATAAACCCATTTATGATTAGATTTTTGATGTATGTATGAGAATCTTGATGATGCTGCAGCTGCAATCAGTGGCTTACA
----------------------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGC 	5
-----------------------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCA 	6
------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAG 	1133
------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGC 	10

Overlaps with: MNEST047545
Overlaps with miRBase pre-miRNAs: ath-MIR172c
HuntMi prediction: true miRNA