miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AGAATCTTGATGATGCTGCAT

selected species: Arabidopsis thaliana



24 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Arabidopsis thaliana GSM304282 AGAATCTTGATGATGCTGCAT GTGGCATCATCAAGATTCACA down 2 0


Secondary structure

GCCACGGTCGTTGTTGGCTGCTGTGGCATCATCAAGATTCACATCTGTTGATGGACGGTGGTGATTCACTCTCCACAAAGTTCTCTATGAAAATGAGAATCTTGATGATGCTGCATCGGCAATCAACGACTATTC
----------------------GTGGCATCATCAAGATTCA 	1
---------------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGCA 	1
---------------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGC 	9
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCATC 	1
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	228
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	42
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGC 	4
------------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCA 	1
-------------------------------------------------------------------------------------------------AATCTTGATGATGCTGCAT 	1
----------------------------------------------------------------------------------------------------CTTGATGATGCTGCATCGGCA 	1
-----------------------------------------------------------------------------------------------------TTGATGATGCTGCATCGGCAA 	1

Overlaps with: MNEST048133
Overlaps with miRBase pre-miRNAs: ath-MIR172a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Arabidopsis thaliana GSM304282 AGAATCTTGATGATGCTGCAT GCAGCACCATTAAGATTCACA down 3 0


Secondary structure

TCATCTGTCGTTGTTTGTAGGCGCAGCACCATTAAGATTCACATGGAAATTGATAAATACCCTAAATTAGGGTTTTGATATGTATATGAGAATCTTGATGATGCTGCATCAACAATCGACGGCTACAA
----------------------GCAGCACCATTAAGATTCACA 	2
----------------------GCAGCACCATTAAGATTCAC 	4
----------------------GCAGCACCATTAAGATTCA 	1
--------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGCA 	1
--------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGC 	9
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCATC 	1
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	228
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	42
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGC 	4
-----------------------------------------------------------------------------------------GAATCTTGATGATGCTGCA 	1
------------------------------------------------------------------------------------------AATCTTGATGATGCTGCAT 	1

Overlaps with: MNEST040064 MNEST046984 MNEST046985
Overlaps with miRBase pre-miRNAs: ath-MIR172b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Arabidopsis thaliana GSM415786-5994 AGAATCTTGATGATGCTGCAT GTGGCATCATCAAGATTCACA down 2 0


Secondary structure

GCCACGGTCGTTGTTGGCTGCTGTGGCATCATCAAGATTCACATCTGTTGATGGACGGTGGTGATTCACTCTCCACAAAGTTCTCTATGAAAATGAGAATCTTGATGATGCTGCATCGGCAATCAACGACTATTC
-------------TTGGCTGCTGTGGCATCATCA 	6
--------------TGGCTGCTGTGGCATCATCAAG 	2
--------------TGGCTGCTGTGGCATCATCAA 	2
--------------TGGCTGCTGTGGCATCATCA 	8
----------------------GTGGCATCATCAAGATTCACA 	10
----------------------GTGGCATCATCAAGATTCAC 	85
----------------------GTGGCATCATCAAGATTCA 	3
---------------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGCAT 	1
---------------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGC 	1
----------------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCAT 	143
----------------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCA 	2
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCATC 	5
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	36453
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	244
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGC 	24
------------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCAT 	826
------------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCA 	5
-------------------------------------------------------------------------------------------------AATCTTGATGATGCTGCAT 	11
--------------------------------------------------------------------------------------------------------------CTGCATCGGCAATCAACGACT 	1

Overlaps with: MNEST048133
Overlaps with miRBase pre-miRNAs: ath-MIR172a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Arabidopsis thaliana GSM415786-5994 AGAATCTTGATGATGCTGCAT GCAGCACCATTAAGATTCACA down 3 0


Secondary structure

TCATCTGTCGTTGTTTGTAGGCGCAGCACCATTAAGATTCACATGGAAATTGATAAATACCCTAAATTAGGGTTTTGATATGTATATGAGAATCTTGATGATGCTGCATCAACAATCGACGGCTACAA
-------------TTTGTAGGCGCAGCACCATTA 	1
----------------------GCAGCACCATTAAGATTCACATG 	1
----------------------GCAGCACCATTAAGATTCACAT 	14
----------------------GCAGCACCATTAAGATTCACA 	69
----------------------GCAGCACCATTAAGATTCAC 	105
----------------------GCAGCACCATTAAGATTCA 	1
--------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGCAT 	1
--------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGC 	1
---------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCAT 	143
---------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCA 	2
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCATCA 	1
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCATC 	5
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	36453
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	244
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGC 	24
-----------------------------------------------------------------------------------------GAATCTTGATGATGCTGCAT 	826
-----------------------------------------------------------------------------------------GAATCTTGATGATGCTGCA 	5
------------------------------------------------------------------------------------------AATCTTGATGATGCTGCATCAACA 	1
------------------------------------------------------------------------------------------AATCTTGATGATGCTGCAT 	11

Overlaps with: MNEST040064 MNEST046984 MNEST046985
Overlaps with miRBase pre-miRNAs: ath-MIR172b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Arabidopsis thaliana GSM424847-4989 AGAATCTTGATGATGCTGCAT GTGGCATCATCAAGATTCACA down 2 0


Secondary structure

GCCACGGTCGTTGTTGGCTGCTGTGGCATCATCAAGATTCACATCTGTTGATGGACGGTGGTGATTCACTCTCCACAAAGTTCTCTATGAAAATGAGAATCTTGATGATGCTGCATCGGCAATCAACGACTATTC
-------TCGTTGTTGGCTGCTGTGGCA 	1
----------TTGTTGGCTGCTGTGGCATCATCA 	1
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	15

Overlaps with: MNEST048133
Overlaps with miRBase pre-miRNAs: ath-MIR172a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Arabidopsis thaliana GSM424847-4989 AGAATCTTGATGATGCTGCAT GCAGCACCATTAAGATTCACA down 3 0


Secondary structure

TCATCTGTCGTTGTTTGTAGGCGCAGCACCATTAAGATTCACATGGAAATTGATAAATACCCTAAATTAGGGTTTTGATATGTATATGAGAATCTTGATGATGCTGCATCAACAATCGACGGCTACAA
----------------------GCAGCACCATTAAGATTCACA 	1
----------------------GCAGCACCATTAAGATTCA 	1
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	15

Overlaps with: MNEST040064 MNEST046984 MNEST046985
Overlaps with miRBase pre-miRNAs: ath-MIR172b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Arabidopsis thaliana GSM415785 AGAATCTTGATGATGCTGCAT GTGGCATCATCAAGATTCACA down 2 0


Secondary structure

GCCACGGTCGTTGTTGGCTGCTGTGGCATCATCAAGATTCACATCTGTTGATGGACGGTGGTGATTCACTCTCCACAAAGTTCTCTATGAAAATGAGAATCTTGATGATGCTGCATCGGCAATCAACGACTATTC
----------------------GTGGCATCATCAAGATTCAC 	10
---------------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGCATC 	1
---------------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGCAT 	1
---------------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGC 	1
----------------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCAT 	42
----------------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCA 	1
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCATC 	13
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	16882
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	38
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGC 	4
------------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCAT 	227
------------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCA 	1

Overlaps with: MNEST048133
Overlaps with miRBase pre-miRNAs: ath-MIR172a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Arabidopsis thaliana GSM415785 AGAATCTTGATGATGCTGCAT GCAGCACCATTAAGATTCACA down 3 0


Secondary structure

TCATCTGTCGTTGTTTGTAGGCGCAGCACCATTAAGATTCACATGGAAATTGATAAATACCCTAAATTAGGGTTTTGATATGTATATGAGAATCTTGATGATGCTGCATCAACAATCGACGGCTACAA
----------------------GCAGCACCATTAAGATTCACAT 	9
----------------------GCAGCACCATTAAGATTCACA 	16
----------------------GCAGCACCATTAAGATTCAC 	58
--------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGCATC 	1
--------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGCAT 	1
--------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGC 	1
---------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCAT 	42
---------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCA 	1
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCATC 	13
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	16882
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	38
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGC 	4
-----------------------------------------------------------------------------------------GAATCTTGATGATGCTGCAT 	227
-----------------------------------------------------------------------------------------GAATCTTGATGATGCTGCA 	1

Overlaps with: MNEST040064 MNEST046984 MNEST046985
Overlaps with miRBase pre-miRNAs: ath-MIR172b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Arabidopsis thaliana GSM366870 AGAATCTTGATGATGCTGCAT GTGGCATCATCAAGATTCACA down 2 0


Secondary structure

GCCACGGTCGTTGTTGGCTGCTGTGGCATCATCAAGATTCACATCTGTTGATGGACGGTGGTGATTCACTCTCCACAAAGTTCTCTATGAAAATGAGAATCTTGATGATGCTGCATCGGCAATCAACGACTATTC
----------------------GTGGCATCATCAAGATTCA 	1
----------------------GTGGCATCATCAAGATTCACA 	1
----------------------GTGGCATCATCAAGATTCAC 	1
-------------------------------------------------GATGGACGGTGGTGATTCACT 	1
--------------------------------------------------------------------------------------------ATGAGAATCTTGATGATGCTG 	1
---------------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGC 	115
---------------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGCAT 	1
----------------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCAT 	4
----------------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCA 	1
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCATC 	4
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	40
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGC 	8
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	4494
------------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCAT 	4
------------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCA 	1
-------------------------------------------------------------------------------------------------AATCTTGATGATGCTGCAT 	2

Overlaps with: MNEST048133
Overlaps with miRBase pre-miRNAs: ath-MIR172a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Arabidopsis thaliana GSM366870 AGAATCTTGATGATGCTGCAT GCAGCACCATTAAGATTCACA down 3 0


Secondary structure

TCATCTGTCGTTGTTTGTAGGCGCAGCACCATTAAGATTCACATGGAAATTGATAAATACCCTAAATTAGGGTTTTGATATGTATATGAGAATCTTGATGATGCTGCATCAACAATCGACGGCTACAA
-----------------TAGGCGCAGCACCATTAAGATT 	1
----------------------GCAGCACCATTAAGATTCACA 	10
----------------------GCAGCACCATTAAGATTCAC 	1
-------------------------------------------------------------------------------------ATGAGAATCTTGATGATGCTG 	1
--------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGC 	115
--------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGCAT 	1
---------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCAT 	4
---------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCA 	1
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCATCA 	1
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCATC 	4
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	40
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGC 	8
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	4494
-----------------------------------------------------------------------------------------GAATCTTGATGATGCTGCAT 	4
-----------------------------------------------------------------------------------------GAATCTTGATGATGCTGCA 	1
------------------------------------------------------------------------------------------AATCTTGATGATGCTGCAT 	2

Overlaps with: MNEST040064 MNEST046984 MNEST046985
Overlaps with miRBase pre-miRNAs: ath-MIR172b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Arabidopsis thaliana GSM366869 AGAATCTTGATGATGCTGCAT GTGGCATCATCAAGATTCACA down 2 0


Secondary structure

GCCACGGTCGTTGTTGGCTGCTGTGGCATCATCAAGATTCACATCTGTTGATGGACGGTGGTGATTCACTCTCCACAAAGTTCTCTATGAAAATGAGAATCTTGATGATGCTGCATCGGCAATCAACGACTATTC
---------------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGCAT 	1
---------------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGC 	3
----------------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCA 	1
----------------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCAT 	38
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	3
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGC 	1
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	78
------------------------------------------------------------------------------------------------------------TGCTGCATCGGCAATCAACGA 	2

Overlaps with: MNEST048133
Overlaps with miRBase pre-miRNAs: ath-MIR172a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Arabidopsis thaliana GSM366869 AGAATCTTGATGATGCTGCAT GCAGCACCATTAAGATTCACA down 3 0


Secondary structure

TCATCTGTCGTTGTTTGTAGGCGCAGCACCATTAAGATTCACATGGAAATTGATAAATACCCTAAATTAGGGTTTTGATATGTATATGAGAATCTTGATGATGCTGCATCAACAATCGACGGCTACAA
----------------------GCAGCACCATTAAGATTCACA 	2
--------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGCAT 	1
--------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGC 	3
---------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCA 	1
---------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCAT 	38
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	3
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGC 	1
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	78

Overlaps with: MNEST040064 MNEST046984 MNEST046985
Overlaps with miRBase pre-miRNAs: ath-MIR172b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Arabidopsis thaliana GSM304284 AGAATCTTGATGATGCTGCAT GTGGCATCATCAAGATTCACA down 2 0


Secondary structure

GCCACGGTCGTTGTTGGCTGCTGTGGCATCATCAAGATTCACATCTGTTGATGGACGGTGGTGATTCACTCTCCACAAAGTTCTCTATGAAAATGAGAATCTTGATGATGCTGCATCGGCAATCAACGACTATTC
----------------------GTGGCATCATCAAGATTCACA 	1
----------------------GTGGCATCATCAAGATTCA 	5
---------------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGCAT 	1
---------------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGC 	12
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	111
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	30
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGC 	3

Overlaps with: MNEST048133
Overlaps with miRBase pre-miRNAs: ath-MIR172a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Arabidopsis thaliana GSM304284 AGAATCTTGATGATGCTGCAT GCAGCACCATTAAGATTCACA down 3 0


Secondary structure

TCATCTGTCGTTGTTTGTAGGCGCAGCACCATTAAGATTCACATGGAAATTGATAAATACCCTAAATTAGGGTTTTGATATGTATATGAGAATCTTGATGATGCTGCATCAACAATCGACGGCTACAA
----------------------GCAGCACCATTAAGATTCACA 	14
----------------------GCAGCACCATTAAGATTCAC 	8
----------------------GCAGCACCATTAAGATTCA 	8
--------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGCAT 	1
--------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGC 	12
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	111
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	30
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGC 	3

Overlaps with: MNEST040064 MNEST046984 MNEST046985
Overlaps with miRBase pre-miRNAs: ath-MIR172b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Arabidopsis thaliana GSM366866 AGAATCTTGATGATGCTGCAT GTGGCATCATCAAGATTCACA down 2 0


Secondary structure

GCCACGGTCGTTGTTGGCTGCTGTGGCATCATCAAGATTCACATCTGTTGATGGACGGTGGTGATTCACTCTCCACAAAGTTCTCTATGAAAATGAGAATCTTGATGATGCTGCATCGGCAATCAACGACTATTC
-------------TTGGCTGCTGTGGCATCATCA 	3
--------------TGGCTGCTGTGGCATCATC 	1
--------------TGGCTGCTGTGGCATCATCA 	2
----------------------GTGGCATCATCAAGATTCAC 	3
----------------------GTGGCATCATCAAGATTCA 	7
----------------------GTGGCATCATCAAGATTCACA 	2
-------------------------------------------------------------------------------------------AATGAGAATCTTGATGATGCTGC 	1
--------------------------------------------------------------------------------------------ATGAGAATCTTGATGATGCTG 	2
---------------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGC 	209
----------------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCAT 	14
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	10
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	3671
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCATC 	1
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGC 	16
------------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCAT 	3
-------------------------------------------------------------------------------------------------AATCTTGATGATGCTGCAT 	1
-----------------------------------------------------------------------------------------------------TTGATGATGCTGCATCGGCA 	1
--------------------------------------------------------------------------------------------------------ATGATGCTGCATCGGCAATC 	2

Overlaps with: MNEST048133
Overlaps with miRBase pre-miRNAs: ath-MIR172a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Arabidopsis thaliana GSM366866 AGAATCTTGATGATGCTGCAT GCAGCACCATTAAGATTCACA down 3 0


Secondary structure

TCATCTGTCGTTGTTTGTAGGCGCAGCACCATTAAGATTCACATGGAAATTGATAAATACCCTAAATTAGGGTTTTGATATGTATATGAGAATCTTGATGATGCTGCATCAACAATCGACGGCTACAA
----------------------GCAGCACCATTAAGATTCACA 	11
----------------------GCAGCACCATTAAGATTCAC 	22
----------------------GCAGCACCATTAAGATTCA 	11
------------------------AGCACCATTAAGATTCACATGGA 	2
-------------------------------------------------------------------------------------ATGAGAATCTTGATGATGCTG 	2
--------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGC 	209
---------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCAT 	14
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	10
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	3671
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCATC 	1
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGC 	16
-----------------------------------------------------------------------------------------GAATCTTGATGATGCTGCAT 	3
------------------------------------------------------------------------------------------AATCTTGATGATGCTGCAT 	1

Overlaps with: MNEST040064 MNEST046984 MNEST046985
Overlaps with miRBase pre-miRNAs: ath-MIR172b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Arabidopsis thaliana GSM424848-4990 AGAATCTTGATGATGCTGCAT GTGGCATCATCAAGATTCACA down 2 0


Secondary structure

GCCACGGTCGTTGTTGGCTGCTGTGGCATCATCAAGATTCACATCTGTTGATGGACGGTGGTGATTCACTCTCCACAAAGTTCTCTATGAAAATGAGAATCTTGATGATGCTGCATCGGCAATCAACGACTATTC
-------TCGTTGTTGGCTGCTGTGGCA 	1
----------------------GTGGCATCATCAAGATTCAC 	2
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	93
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	2

Overlaps with: MNEST048133
Overlaps with miRBase pre-miRNAs: ath-MIR172a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
18 Arabidopsis thaliana GSM424848-4990 AGAATCTTGATGATGCTGCAT GCAGCACCATTAAGATTCACA down 3 0


Secondary structure

TCATCTGTCGTTGTTTGTAGGCGCAGCACCATTAAGATTCACATGGAAATTGATAAATACCCTAAATTAGGGTTTTGATATGTATATGAGAATCTTGATGATGCTGCATCAACAATCGACGGCTACAA
----------------------GCAGCACCATTAAGATTCACAT 	1
----------------------GCAGCACCATTAAGATTCACA 	2
----------------------GCAGCACCATTAAGATTCAC 	1
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	93
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	2

Overlaps with: MNEST040064 MNEST046984 MNEST046985
Overlaps with miRBase pre-miRNAs: ath-MIR172b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
19 Arabidopsis thaliana GSM304283 AGAATCTTGATGATGCTGCAT GTGGCATCATCAAGATTCACA down 2 0


Secondary structure

GCCACGGTCGTTGTTGGCTGCTGTGGCATCATCAAGATTCACATCTGTTGATGGACGGTGGTGATTCACTCTCCACAAAGTTCTCTATGAAAATGAGAATCTTGATGATGCTGCATCGGCAATCAACGACTATTC
--------------------------------------------------------------------------------------------ATGAGAATCTTGATGATGCTG 	1
---------------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGC 	1
----------------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCAT 	5
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCATC 	2
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	1549
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	19
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGC 	13
-------------------------------------------------------------------------------------------------AATCTTGATGATGCTGCAT 	2

Overlaps with: MNEST048133
Overlaps with miRBase pre-miRNAs: ath-MIR172a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
20 Arabidopsis thaliana GSM304283 AGAATCTTGATGATGCTGCAT GCAGCACCATTAAGATTCACA down 3 0


Secondary structure

TCATCTGTCGTTGTTTGTAGGCGCAGCACCATTAAGATTCACATGGAAATTGATAAATACCCTAAATTAGGGTTTTGATATGTATATGAGAATCTTGATGATGCTGCATCAACAATCGACGGCTACAA
-------------------------------------------------------------------------------------ATGAGAATCTTGATGATGCTG 	1
--------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGC 	1
---------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCAT 	5
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCATC 	2
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	1549
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	19
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGC 	13
------------------------------------------------------------------------------------------AATCTTGATGATGCTGCAT 	2

Overlaps with: MNEST040064 MNEST046984 MNEST046985
Overlaps with miRBase pre-miRNAs: ath-MIR172b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
21 Arabidopsis thaliana GSM304285 AGAATCTTGATGATGCTGCAT GTGGCATCATCAAGATTCACA down 2 0


Secondary structure

GCCACGGTCGTTGTTGGCTGCTGTGGCATCATCAAGATTCACATCTGTTGATGGACGGTGGTGATTCACTCTCCACAAAGTTCTCTATGAAAATGAGAATCTTGATGATGCTGCATCGGCAATCAACGACTATTC
---------------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGC 	13
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	78
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	27
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGC 	3
-------------------------------------------------------------------------------------------------AATCTTGATGATGCTGCAT 	3

Overlaps with: MNEST048133
Overlaps with miRBase pre-miRNAs: ath-MIR172a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
22 Arabidopsis thaliana GSM304285 AGAATCTTGATGATGCTGCAT GCAGCACCATTAAGATTCACA down 3 0


Secondary structure

TCATCTGTCGTTGTTTGTAGGCGCAGCACCATTAAGATTCACATGGAAATTGATAAATACCCTAAATTAGGGTTTTGATATGTATATGAGAATCTTGATGATGCTGCATCAACAATCGACGGCTACAA
----------------------GCAGCACCATTAAGATTCAC 	1
--------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGC 	13
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	78
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	27
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGC 	3
------------------------------------------------------------------------------------------AATCTTGATGATGCTGCAT 	3

Overlaps with: MNEST040064 MNEST046984 MNEST046985
Overlaps with miRBase pre-miRNAs: ath-MIR172b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
23 Arabidopsis thaliana GSM518432-13544 AGAATCTTGATGATGCTGCAT GTGGCATCATCAAGATTCACA down 2 0


Secondary structure

GCCACGGTCGTTGTTGGCTGCTGTGGCATCATCAAGATTCACATCTGTTGATGGACGGTGGTGATTCACTCTCCACAAAGTTCTCTATGAAAATGAGAATCTTGATGATGCTGCATCGGCAATCAACGACTATTC
-------TCGTTGTTGGCTGCTGTGGCA 	1
----------TTGTTGGCTGCTGTGGCATCATCA 	1
--------------TGGCTGCTGTGGCATCATCAAG 	1
--------------TGGCTGCTGTGGCATCATCA 	1
----------------------GTGGCATCATCAAGATTCACA 	1
--------------------------------------------------------------------------------------------ATGAGAATCTTGATGATGCTG 	1
--------------------------------------------------------------------------------------------ATGAGAATCTTGATGATGCTGC 	1
---------------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGC 	523
---------------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTG 	1
---------------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGCAT 	1
----------------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCAT 	75
----------------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCA 	1
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	105
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	9556
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCATC 	7
-----------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGC 	31
------------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCA 	12
------------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCAT 	4
-------------------------------------------------------------------------------------------------AATCTTGATGATGCTGCAT 	11
-----------------------------------------------------------------------------------------------------TTGATGATGCTGCATCGGCAA 	3
--------------------------------------------------------------------------------------------------------ATGATGCTGCATCGGCAATC 	3

Overlaps with: MNEST048133
Overlaps with miRBase pre-miRNAs: ath-MIR172a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
24 Arabidopsis thaliana GSM518432-13544 AGAATCTTGATGATGCTGCAT GCAGCACCATTAAGATTCACA down 3 0


Secondary structure

TCATCTGTCGTTGTTTGTAGGCGCAGCACCATTAAGATTCACATGGAAATTGATAAATACCCTAAATTAGGGTTTTGATATGTATATGAGAATCTTGATGATGCTGCATCAACAATCGACGGCTACAA
-----------------TAGGCGCAGCACCATTAAGAT 	1
----------------------GCAGCACCATTAAGATTCACA 	16
----------------------GCAGCACCATTAAGATTCAC 	5
----------------------GCAGCACCATTAAGATTCA 	4
-------------------------------------------------------------------------------------ATGAGAATCTTGATGATGCTG 	1
-------------------------------------------------------------------------------------ATGAGAATCTTGATGATGCTGC 	1
--------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGC 	523
--------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTG 	1
--------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGCAT 	1
---------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCAT 	75
---------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCA 	1
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	105
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	9556
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCATC 	7
----------------------------------------------------------------------------------------AGAATCTTGATGATGCTGC 	31
-----------------------------------------------------------------------------------------GAATCTTGATGATGCTGCA 	12
-----------------------------------------------------------------------------------------GAATCTTGATGATGCTGCAT 	4
------------------------------------------------------------------------------------------AATCTTGATGATGCTGCAT 	11
-----------------------------------------------------------------------------------------------TGATGATGCTGCATCAACAATCGA 	1

Overlaps with: MNEST040064 MNEST046984 MNEST046985
Overlaps with miRBase pre-miRNAs: ath-MIR172b
HuntMi prediction: true miRNA