miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AGAATCTTGATGATGCTGCAT

selected species: Brachypodium distachyon



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Brachypodium distachyon GSM506620-12051 AGAATCTTGATGATGCTGCAT GCAGCACCACCAAGATTCACA down 3 0


Secondary structure

CGCACAGTCGGCGCTTGCAGGTGCAGCACCACCAAGATTCACATCGGGTTCTCCAGTCGTAATTAATTAACGAGGAGTACAACCATGATGAGAATCTTGATGATGCTGCATCGGCAACCGCTCGACTACT
----------------------GCAGCACCACCAAGATTCACA 	6
----------------------GCAGCACCACCAAGATTCAC 	1
----------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGC 	57
-----------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCAT 	1
-----------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCA 	2
-----------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGC 	2
------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	1378
------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	7
------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGC 	2
--------------------------------------------------------------------------------------------AATCTTGATGATGCTGCAT 	3
---------------------------------------------------------------------------------------------ATCTTGATGATGCTGCATCGG 	1
----------------------------------------------------------------------------------------------TCTTGATGATGCTGCATCGGCA 	1
----------------------------------------------------------------------------------------------TCTTGATGATGCTGCATCGGC 	54
-----------------------------------------------------------------------------------------------CTTGATGATGCTGCATCGGCA 	3
------------------------------------------------------------------------------------------------TTGATGATGCTGCATCGGCAA 	6


Overlaps with: MNEST041767
Overlaps with miRBase pre-miRNAs: bdi-MIR172a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Brachypodium distachyon GSM506621-23192 AGAATCTTGATGATGCTGCAT GCAGCACCACCAAGATTCACA down 3 0


Secondary structure

CGCACAGTCGGCGCTTGCAGGTGCAGCACCACCAAGATTCACATCGGGTTCTCCAGTCGTAATTAATTAACGAGGAGTACAACCATGATGAGAATCTTGATGATGCTGCATCGGCAACCGCTCGACTACT
----------------------GCAGCACCACCAAGATTCACA 	2
---------------------------------------------------------------------------------------ATGAGAATCTTGATGATGCTGCAT 	2
----------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGCAT 	1
-----------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCA 	2
-----------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCAT 	4
------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGC 	18
------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	17153
------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	170
------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCATC 	1
-------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCA 	2
-------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCAT 	170
--------------------------------------------------------------------------------------------AATCTTGATGATGCTGCAT 	1
----------------------------------------------------------------------------------------------TCTTGATGATGCTGCATCGGC 	1


Overlaps with: MNEST041767
Overlaps with miRBase pre-miRNAs: bdi-MIR172a
HuntMi prediction: true miRNA