miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: AGAATCTTGATGATGCTGCAT

selected species: Solanum lycopersicum

4 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Solanum lycopersicum	GSM304985	AGAATCTTGATGATGCTGCAT	GTGGCATAATCAAGATTCACG	down	2	0

Secondary structure

CTTACAGTCGTTGTTTGCATATGTGGCATAATCAAGATTCACGTGAAAAGTTGCAAATTGGTTATATAATTGATGAAATTAATGGCTGGCTATTTGAAACTCACGAGAATCTTGATGATGCTGCATCAGCAATAAACGACTATTG
----------------------GTGGCATAATCAAGATTCA 	2
--------------------------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCA 	1
---------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	13
---------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	3
---------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGC 	1
----------------------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCAT 	2
----------------------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCA 	1

Overlaps with: MNEST041542 MNEST046620 MNEST054555
Overlaps with miRBase pre-miRNAs: sly-MIR172a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Solanum lycopersicum	GSM304985	AGAATCTTGATGATGCTGCAT	GCAGCATCATCAAGATTCACA	down	2	0

Secondary structure

ATGTACAGTCGTTATTTGCAGCTGCAGCATCATCAAGATTCACATAAAATAGAAATAATATGGAGTAGGAAAAAAAATCAAGTTGCTTCTAAATTCCATATTATTATTTTTTTTCAAAAATGAGAATCTTGATGATGCTGCATCGACAAATTATGACTTTTTC
---------------------CTGCAGCATCATCAAGATTCA 	1
------------------------------------------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGCA 	1
-------------------------------------------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCA 	1
--------------------------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	13
--------------------------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	3
--------------------------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGC 	1
---------------------------------------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCAT 	2
---------------------------------------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCA 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Solanum lycopersicum	GSM304985	AGAATCTTGATGATGCTGCAT	GTAGCATCATCAAGATTCATA	down	1	0

Secondary structure

AACACAGTTGTTGTTTGCAAATGTAGCATCATCAAGATTCATACATGAAAATTAAGAGGCAAGGTTAAATATGTAGCTTTAATTTGAAATGAAAAATATAATATATCATGACCATGTCTATTTATTTCAAAGTGAGAATCTTGATGATGCTGCATCAGCAATAAATAACTATCG
----------------------GTAGCATCATCAAGATTCATA 	4
----------------------GTAGCATCATCAAGATTCAT 	2
----------------------GTAGCATCATCAAGATTCA 	2
------------------------------------------------------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGCA 	1
-------------------------------------------------------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCA 	1
--------------------------------------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	13
--------------------------------------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	3
--------------------------------------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGC 	1
---------------------------------------------------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCAT 	2
---------------------------------------------------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCA 	1

Overlaps with: MNEST041543 MNEST054556
Overlaps with miRBase pre-miRNAs: sly-MIR172b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Solanum lycopersicum	GSM304985	AGAATCTTGATGATGCTGCAT	GCAGCACCATTAAGATTCACA	down	2	0

Secondary structure

TTACTTGCTAGTGCAGCACCATTAAGATTCACATAGAAAATATGGAACGAAATTTGCTCAATTTTTCAATATATGAGAATCTTGATGATGCTGCATTGGCAAATC
------------GCAGCACCATTAAGATTCACA 	1
------------GCAGCACCATTAAGATTCAC 	1
-------------------------------------------------------------------------TGAGAATCTTGATGATGCTGCA 	1
--------------------------------------------------------------------------GAGAATCTTGATGATGCTGCA 	1
---------------------------------------------------------------------------AGAATCTTGATGATGCTGCATT 	1
---------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	13
---------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	3
---------------------------------------------------------------------------AGAATCTTGATGATGCTGC 	1
----------------------------------------------------------------------------GAATCTTGATGATGCTGCATT 	1
----------------------------------------------------------------------------GAATCTTGATGATGCTGCAT 	2
----------------------------------------------------------------------------GAATCTTGATGATGCTGCA 	1

HuntMi prediction: true miRNA