miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: AGAATCTTGATGATGCTGCAT

selected species: Vitis vinifera

9 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Vitis vinifera	GSM458927	AGAATCTTGATGATGCTGCAT	GTAGCATCATCAAGATTCACA	down	1	0

Secondary structure

TTGACAGTGGTTGTTTGCGCATGTAGCATCATCAAGATTCACATGCAAATGCACGGTGGTGATGTTATCTCTGCCAAACTTTTCAAGGATGAGAATCTTGATGATGCTGCATCGGCAATAAACTACTATAC
----------------------GTAGCATCATCAAGATTCACA 	10
----------------------GTAGCATCATCAAGATTCAC 	10
----------------------GTAGCATCATCAAGATTCA 	1
-------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	62
-------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	6
------------------------------------------------------------------------------------------------CTTGATGATGCTGCATCGGCA 	25
-------------------------------------------------------------------------------------------------TTGATGATGCTGCATCGGCA 	1

Overlaps with: MNEST041631 MNEST054837
Overlaps with miRBase pre-miRNAs: vvi-MIR172a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Vitis vinifera	GSM458927	AGAATCTTGATGATGCTGCAT	GCAGCATCATCAAGATTCACA	down	1	0

Secondary structure

GATGGACACAGTCGTTAGCTGATGCAGCATCATCAAGATTCACACCCAATGGAAGGGCAGTGATGCAATCTCTGCCAAAGATTTTGAGATGAGAATCTTGATGATGCTGCATTCGCAGTGAACGACTAAACC
-------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	62
-------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	6

Overlaps with: MNEST041634 MNEST054840
Overlaps with miRBase pre-miRNAs: vvi-MIR172d
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Vitis vinifera	GSM458927	AGAATCTTGATGATGCTGCAT	GTAGCATCATCAAGATTCACA	down	1	0

Secondary structure

TTAAGAGTTGTTGTTTGCAGGTGTAGCATCATCAAGATTCACATGCGAAAGCCCGGCGCGGCAGCGATGCCATCTTCGCTGCCTCAAGTTTTGGGGTTGAGAATCTTGATGATGCTGCATCGGCAATAGATGACTATAC
-----------------CAGGTGTAGCATCATCAAGAT 	14
-----------------CAGGTGTAGCATCATCAAGA 	1
------------------AGGTGTAGCATCATCAAGAT 	1
----------------------GTAGCATCATCAAGATTCACA 	10
----------------------GTAGCATCATCAAGATTCAC 	10
----------------------GTAGCATCATCAAGATTCA 	1
---------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	62
---------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	6
--------------------------------------------------------------------------------------------------------CTTGATGATGCTGCATCGGCA 	25
---------------------------------------------------------------------------------------------------------TTGATGATGCTGCATCGGCA 	1

Overlaps with: MNEST041632 MNEST054838
Overlaps with miRBase pre-miRNAs: vvi-MIR172b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Vitis vinifera	GSM458929-2717	AGAATCTTGATGATGCTGCAT	GTAGCATCATCAAGATTCACA	down	1	0

Secondary structure

TTGACAGTGGTTGTTTGCGCATGTAGCATCATCAAGATTCACATGCAAATGCACGGTGGTGATGTTATCTCTGCCAAACTTTTCAAGGATGAGAATCTTGATGATGCTGCATCGGCAATAAACTACTATAC
----------------------GTAGCATCATCAAGATTCACA 	2
----------------------GTAGCATCATCAAGATTCAC 	4
----------------------GTAGCATCATCAAGATTCA 	1
------------------------AGCATCATCAAGATTCACA 	1
-----------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGC 	7
-----------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTG 	1
-------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	42
-------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	4
--------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCA 	8
------------------------------------------------------------------------------------------------CTTGATGATGCTGCATCGGCA 	10

Overlaps with: MNEST041631 MNEST054837
Overlaps with miRBase pre-miRNAs: vvi-MIR172a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Vitis vinifera	GSM458929-2717	AGAATCTTGATGATGCTGCAT	GCAGCATCATCAAGATTCACA	down	1	0

Secondary structure

GATGGACACAGTCGTTAGCTGATGCAGCATCATCAAGATTCACACCCAATGGAAGGGCAGTGATGCAATCTCTGCCAAAGATTTTGAGATGAGAATCTTGATGATGCTGCATTCGCAGTGAACGACTAAACC
-------------------------AGCATCATCAAGATTCACA 	1
-----------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGC 	7
-----------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTG 	1
-------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCATT 	1
-------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	42
-------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	4
--------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCA 	8

Overlaps with: MNEST041634 MNEST054840
Overlaps with miRBase pre-miRNAs: vvi-MIR172d
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Vitis vinifera	GSM458929-2717	AGAATCTTGATGATGCTGCAT	GTAGCATCATCAAGATTCACA	down	1	0

Secondary structure

TTAAGAGTTGTTGTTTGCAGGTGTAGCATCATCAAGATTCACATGCGAAAGCCCGGCGCGGCAGCGATGCCATCTTCGCTGCCTCAAGTTTTGGGGTTGAGAATCTTGATGATGCTGCATCGGCAATAGATGACTATAC
-----------------CAGGTGTAGCATCATCAAGAT 	3
----------------------GTAGCATCATCAAGATTCACA 	2
----------------------GTAGCATCATCAAGATTCAC 	4
----------------------GTAGCATCATCAAGATTCA 	1
------------------------AGCATCATCAAGATTCACA 	1
-------------------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGC 	7
-------------------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTG 	1
---------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	42
---------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	4
----------------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCA 	8
--------------------------------------------------------------------------------------------------------CTTGATGATGCTGCATCGGCA 	10

Overlaps with: MNEST041632 MNEST054838
Overlaps with miRBase pre-miRNAs: vvi-MIR172b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Vitis vinifera	GSM458928-2716	AGAATCTTGATGATGCTGCAT	GTAGCATCATCAAGATTCACA	down	1	0

Secondary structure

TTGACAGTGGTTGTTTGCGCATGTAGCATCATCAAGATTCACATGCAAATGCACGGTGGTGATGTTATCTCTGCCAAACTTTTCAAGGATGAGAATCTTGATGATGCTGCATCGGCAATAAACTACTATAC
----------------------GTAGCATCATCAAGATTCACA 	1
----------------------GTAGCATCATCAAGATTCAC 	1
----------------------------------------------------------------------------------------ATGAGAATCTTGATGATGCTG 	1
-----------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTG 	1
-------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	42
-------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	4
--------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCAT 	1
------------------------------------------------------------------------------------------------CTTGATGATGCTGCATCGGCA 	12

Overlaps with: MNEST041631 MNEST054837
Overlaps with miRBase pre-miRNAs: vvi-MIR172a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Vitis vinifera	GSM458928-2716	AGAATCTTGATGATGCTGCAT	GCAGCATCATCAAGATTCACA	down	1	0

Secondary structure

GATGGACACAGTCGTTAGCTGATGCAGCATCATCAAGATTCACACCCAATGGAAGGGCAGTGATGCAATCTCTGCCAAAGATTTTGAGATGAGAATCTTGATGATGCTGCATTCGCAGTGAACGACTAAACC
----------------------------------------------------------------------------------------ATGAGAATCTTGATGATGCTG 	1
-----------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTG 	1
-------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	42
-------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	4
--------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCAT 	1

Overlaps with: MNEST041634 MNEST054840
Overlaps with miRBase pre-miRNAs: vvi-MIR172d
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Vitis vinifera	GSM458928-2716	AGAATCTTGATGATGCTGCAT	GTAGCATCATCAAGATTCACA	down	1	0

Secondary structure

TTAAGAGTTGTTGTTTGCAGGTGTAGCATCATCAAGATTCACATGCGAAAGCCCGGCGCGGCAGCGATGCCATCTTCGCTGCCTCAAGTTTTGGGGTTGAGAATCTTGATGATGCTGCATCGGCAATAGATGACTATAC
-----------------CAGGTGTAGCATCATCAAGAT 	4
-----------------CAGGTGTAGCATCATCAAGA 	1
----------------------GTAGCATCATCAAGATTCACA 	1
----------------------GTAGCATCATCAAGATTCAC 	1
-------------------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTG 	1
---------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	42
---------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	4
----------------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCAT 	1
--------------------------------------------------------------------------------------------------------CTTGATGATGCTGCATCGGCA 	12

Overlaps with: MNEST041632 MNEST054838
Overlaps with miRBase pre-miRNAs: vvi-MIR172b
HuntMi prediction: true miRNA