miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AGAGAATTGAAGAGAGTGCAT

selected species: Physcomitrella patens



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM313212 AGAGAATTGAAGAGAGTGCAT ACACTCTCTCCATTTCTCTGC down 4 0


Secondary structure

GGCCAGCTTGCAATTTCATGACACACTCTCTCCATTTCTCTGCCTGTCATGACTTGGTTGATCGATGGAGCGGTGGTTTTCATTGCCCGATTGAGGATCAGGAGTTGGGGAGAGAATTGAAGAGAGTGCATTGTGAATTGCAAGCTCCTC
---------------------CACACTCTCTCCATTTCTCTGC 	1
----------------------ACACTCTCTCCATTTCTCTG 	4
----------------------ACACTCTCTCCATTTCTCTGC 	260
----------------------ACACTCTCTCCATTTCTCT 	24
----------------------ACACTCTCTCCATTTCTCTGCC 	4
------------------------ACTCTCTCCATTTCTCTGC 	1
-------------------------------------------------------------------------------------------------------------GAGAGAATTGAAGAGAGTGCAT 	4
--------------------------------------------------------------------------------------------------------------AGAGAATTGAAGAGAGTGCA 	104
--------------------------------------------------------------------------------------------------------------AGAGAATTGAAGAGAGTGCATT 	16
--------------------------------------------------------------------------------------------------------------AGAGAATTGAAGAGAGTGCAT 	452
---------------------------------------------------------------------------------------------------------------GAGAATTGAAGAGAGTGCAT 	3
----------------------------------------------------------------------------------------------------------------AGAATTGAAGAGAGTGCAT 	2

Overlaps with: MNEST055504
Overlaps with miRBase pre-miRNAs: ppt-MIR1023b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM115095 AGAGAATTGAAGAGAGTGCAT ACACTCTCTCCATTTCTCTGC down 4 0


Secondary structure

GGCCAGCTTGCAATTTCATGACACACTCTCTCCATTTCTCTGCCTGTCATGACTTGGTTGATCGATGGAGCGGTGGTTTTCATTGCCCGATTGAGGATCAGGAGTTGGGGAGAGAATTGAAGAGAGTGCATTGTGAATTGCAAGCTCCTC
----------------------ACACTCTCTCCATTTCTCTGCC 	1
----------------------ACACTCTCTCCATTTCTCTGC 	20
----------------------ACACTCTCTCCATTTCTCT 	1
--------------------------------------------------------------------------------------------------------------AGAGAATTGAAGAGAGTGCAT 	31
--------------------------------------------------------------------------------------------------------------AGAGAATTGAAGAGAGTGCA 	4

Overlaps with: MNEST055504
Overlaps with miRBase pre-miRNAs: ppt-MIR1023b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM313213 AGAGAATTGAAGAGAGTGCAT ACACTCTCTCCATTTCTCTGC down 4 0


Secondary structure

GGCCAGCTTGCAATTTCATGACACACTCTCTCCATTTCTCTGCCTGTCATGACTTGGTTGATCGATGGAGCGGTGGTTTTCATTGCCCGATTGAGGATCAGGAGTTGGGGAGAGAATTGAAGAGAGTGCATTGTGAATTGCAAGCTCCTC
----------------------ACACTCTCTCCATTTCTCTG 	5
----------------------ACACTCTCTCCATTTCTCTGCC 	7
----------------------ACACTCTCTCCATTTCTCT 	30
----------------------ACACTCTCTCCATTTCTCTGC 	246
------------------------ACTCTCTCCATTTCTCTGC 	1
-------------------------------------------------------------------------------------------------------------GAGAGAATTGAAGAGAGTGCAT 	6
-------------------------------------------------------------------------------------------------------------GAGAGAATTGAAGAGAGTGCA 	1
--------------------------------------------------------------------------------------------------------------AGAGAATTGAAGAGAGTGCA 	105
--------------------------------------------------------------------------------------------------------------AGAGAATTGAAGAGAGTGC 	4
--------------------------------------------------------------------------------------------------------------AGAGAATTGAAGAGAGTGCATT 	13
--------------------------------------------------------------------------------------------------------------AGAGAATTGAAGAGAGTGCAT 	421
---------------------------------------------------------------------------------------------------------------GAGAATTGAAGAGAGTGCAT 	2
---------------------------------------------------------------------------------------------------------------GAGAATTGAAGAGAGTGCA 	2
----------------------------------------------------------------------------------------------------------------AGAATTGAAGAGAGTGCAT 	4
-------------------------------------------------------------------------------------------------------------------------GAGAGTGCATTGTGAATTG 	1
-------------------------------------------------------------------------------------------------------------------------GAGAGTGCATTGTGAATTGC 	1

Overlaps with: MNEST055504
Overlaps with miRBase pre-miRNAs: ppt-MIR1023b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Physcomitrella patens GSM115096 AGAGAATTGAAGAGAGTGCAT ACACTCTCTCCATTTCTCTGC down 4 0


Secondary structure

GGCCAGCTTGCAATTTCATGACACACTCTCTCCATTTCTCTGCCTGTCATGACTTGGTTGATCGATGGAGCGGTGGTTTTCATTGCCCGATTGAGGATCAGGAGTTGGGGAGAGAATTGAAGAGAGTGCATTGTGAATTGCAAGCTCCTC
----------------------ACACTCTCTCCATTTCTCTGCC 	1
----------------------ACACTCTCTCCATTTCTCTGC 	104
----------------------ACACTCTCTCCATTTCTCT 	11
-----------------------CACTCTCTCCATTTCTCTGC 	2
--------------------------------------------------------------------------------------------------------------AGAGAATTGAAGAGAGTGCATT 	8
--------------------------------------------------------------------------------------------------------------AGAGAATTGAAGAGAGTGCAT 	148
--------------------------------------------------------------------------------------------------------------AGAGAATTGAAGAGAGTGCA 	19

Overlaps with: MNEST055504
Overlaps with miRBase pre-miRNAs: ppt-MIR1023b
HuntMi prediction: true miRNA