miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AGAGAATTGGAGAGAGTGCAT

selected species: Physcomitrella patens



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM115097 AGAGAATTGGAGAGAGTGCAT ACACTCTCTCCATTTCTCTAC down 3 0


Secondary structure

GACCACCTTGCAGTTTCATGGCACACTCTCTCCATTTCTCTACCGTTCATGCAGCGGTTGATCGATTGGGTTGCTGGTTGATTGATCGATCGATGGTCAGGAGTTGGAAGAGAATTGGAGAGAGTGCATTGTGAATTGCGGGGTTGAC
----------------------ACACTCTCTCCATTTCTCTACC 	1
----------------------ACACTCTCTCCATTTCTCTAC 	61
-----------------------CACTCTCTCCATTTCTCTAC 	1
-----------------------------------------------------------------------------------------------------------AAGAGAATTGGAGAGAGTGCAT 	2
------------------------------------------------------------------------------------------------------------AGAGAATTGGAGAGAGTGCAT 	64
------------------------------------------------------------------------------------------------------------AGAGAATTGGAGAGAGTGC 	1
------------------------------------------------------------------------------------------------------------AGAGAATTGGAGAGAGTGCA 	31


Overlaps with: MNEST006986
Overlaps with miRBase pre-miRNAs: ppt-MIR1023a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM313212 AGAGAATTGGAGAGAGTGCAT ACACTCTCTCCATTTCTCTAC down 3 0


Secondary structure

GACCACCTTGCAGTTTCATGGCACACTCTCTCCATTTCTCTACCGTTCATGCAGCGGTTGATCGATTGGGTTGCTGGTTGATTGATCGATCGATGGTCAGGAGTTGGAAGAGAATTGGAGAGAGTGCATTGTGAATTGCGGGGTTGAC
---------------------CACACTCTCTCCATTTCTCTACC 	1
----------------------ACACTCTCTCCATTTCTCTA 	69
----------------------ACACTCTCTCCATTTCTCTACC 	59
----------------------ACACTCTCTCCATTTCTCTAC 	1595
----------------------ACACTCTCTCCATTTCTCT 	24
-----------------------CACTCTCTCCATTTCTCTAC 	7
------------------------ACTCTCTCCATTTCTCTAC 	3
------------------------ACTCTCTCCATTTCTCTACCGTT 	1
---------------------------------------------------------------------------------------------------------GGAAGAGAATTGGAGAGAGTGCAT 	1
----------------------------------------------------------------------------------------------------------GAAGAGAATTGGAGAGAGTGCAT 	4
----------------------------------------------------------------------------------------------------------GAAGAGAATTGGAGAGAGTGCA 	1
-----------------------------------------------------------------------------------------------------------AAGAGAATTGGAGAGAGTGCAT 	27
-----------------------------------------------------------------------------------------------------------AAGAGAATTGGAGAGAGTGCATT 	3
-----------------------------------------------------------------------------------------------------------AAGAGAATTGGAGAGAGTGCA 	25
------------------------------------------------------------------------------------------------------------AGAGAATTGGAGAGAGTGC 	10
------------------------------------------------------------------------------------------------------------AGAGAATTGGAGAGAGTGCA 	807
------------------------------------------------------------------------------------------------------------AGAGAATTGGAGAGAGTGCAT 	3022
------------------------------------------------------------------------------------------------------------AGAGAATTGGAGAGAGTGCATT 	121
-------------------------------------------------------------------------------------------------------------GAGAATTGGAGAGAGTGCA 	17
-------------------------------------------------------------------------------------------------------------GAGAATTGGAGAGAGTGCATT 	1
-------------------------------------------------------------------------------------------------------------GAGAATTGGAGAGAGTGCAT 	44
--------------------------------------------------------------------------------------------------------------AGAATTGGAGAGAGTGCATT 	2
--------------------------------------------------------------------------------------------------------------AGAATTGGAGAGAGTGCAT 	23


Overlaps with: MNEST006986
Overlaps with miRBase pre-miRNAs: ppt-MIR1023a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM115095 AGAGAATTGGAGAGAGTGCAT ACACTCTCTCCATTTCTCTAC down 3 0


Secondary structure

GACCACCTTGCAGTTTCATGGCACACTCTCTCCATTTCTCTACCGTTCATGCAGCGGTTGATCGATTGGGTTGCTGGTTGATTGATCGATCGATGGTCAGGAGTTGGAAGAGAATTGGAGAGAGTGCATTGTGAATTGCGGGGTTGAC
----------------------ACACTCTCTCCATTTCTCTACC 	1
----------------------ACACTCTCTCCATTTCTCTAC 	75
----------------------ACACTCTCTCCATTTCTCTA 	2
----------------------ACACTCTCTCCATTTCTCT 	1
------------------------------------------------------------------------------------------------------------AGAGAATTGGAGAGAGTGCAT 	151
------------------------------------------------------------------------------------------------------------AGAGAATTGGAGAGAGTGCATT 	4
------------------------------------------------------------------------------------------------------------AGAGAATTGGAGAGAGTGCA 	19
-------------------------------------------------------------------------------------------------------------GAGAATTGGAGAGAGTGCA 	1
--------------------------------------------------------------------------------------------------------------AGAATTGGAGAGAGTGCAT 	1


Overlaps with: MNEST006986
Overlaps with miRBase pre-miRNAs: ppt-MIR1023a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Physcomitrella patens GSM313213 AGAGAATTGGAGAGAGTGCAT ACACTCTCTCCATTTCTCTAC down 3 0


Secondary structure

GACCACCTTGCAGTTTCATGGCACACTCTCTCCATTTCTCTACCGTTCATGCAGCGGTTGATCGATTGGGTTGCTGGTTGATTGATCGATCGATGGTCAGGAGTTGGAAGAGAATTGGAGAGAGTGCATTGTGAATTGCGGGGTTGAC
---------------------CACACTCTCTCCATTTCTCTAC 	2
----------------------ACACTCTCTCCATTTCTCTA 	70
----------------------ACACTCTCTCCATTTCTCTACC 	68
----------------------ACACTCTCTCCATTTCTCTAC 	1686
----------------------ACACTCTCTCCATTTCTCT 	30
-----------------------CACTCTCTCCATTTCTCTAC 	4
------------------------ACTCTCTCCATTTCTCTAC 	8
--------------------------------------------------------------------------------------------------AGGAGTTGGAAGAGAATTGGA 	1
---------------------------------------------------------------------------------------------------------GGAAGAGAATTGGAGAGAGTGCAT 	1
----------------------------------------------------------------------------------------------------------GAAGAGAATTGGAGAGAGTGCAT 	4
-----------------------------------------------------------------------------------------------------------AAGAGAATTGGAGAGAGTGCAT 	32
-----------------------------------------------------------------------------------------------------------AAGAGAATTGGAGAGAGTGCATT 	1
-----------------------------------------------------------------------------------------------------------AAGAGAATTGGAGAGAGTGCA 	15
------------------------------------------------------------------------------------------------------------AGAGAATTGGAGAGAGTGC 	7
------------------------------------------------------------------------------------------------------------AGAGAATTGGAGAGAGTGCA 	806
------------------------------------------------------------------------------------------------------------AGAGAATTGGAGAGAGTGCAT 	3264
------------------------------------------------------------------------------------------------------------AGAGAATTGGAGAGAGTGCATT 	114
-------------------------------------------------------------------------------------------------------------GAGAATTGGAGAGAGTGCA 	28
-------------------------------------------------------------------------------------------------------------GAGAATTGGAGAGAGTGCATT 	5
-------------------------------------------------------------------------------------------------------------GAGAATTGGAGAGAGTGCAT 	50
--------------------------------------------------------------------------------------------------------------AGAATTGGAGAGAGTGCAT 	13
--------------------------------------------------------------------------------------------------------------AGAATTGGAGAGAGTGCATT 	2
---------------------------------------------------------------------------------------------------------------GAATTGGAGAGAGTGCATT 	1
-----------------------------------------------------------------------------------------------------------------------GAGAGTGCATTGTGAATTG 	1
-----------------------------------------------------------------------------------------------------------------------GAGAGTGCATTGTGAATTGC 	1


Overlaps with: MNEST006986
Overlaps with miRBase pre-miRNAs: ppt-MIR1023a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Physcomitrella patens GSM313215 AGAGAATTGGAGAGAGTGCAT ACACTCTCTCCATTTCTCTAC down 3 0


Secondary structure

GACCACCTTGCAGTTTCATGGCACACTCTCTCCATTTCTCTACCGTTCATGCAGCGGTTGATCGATTGGGTTGCTGGTTGATTGATCGATCGATGGTCAGGAGTTGGAAGAGAATTGGAGAGAGTGCATTGTGAATTGCGGGGTTGAC
---------------------CACACTCTCTCCATTTCTCTAC 	1
----------------------ACACTCTCTCCATTTCTCTACC 	69
----------------------ACACTCTCTCCATTTCTCTAC 	2023
----------------------ACACTCTCTCCATTTCTCTA 	5
----------------------ACACTCTCTCCATTTCTCT 	3
-----------------------CACTCTCTCCATTTCTCTAC 	9
------------------------ACTCTCTCCATTTCTCTAC 	2
------------------------------------------------------CGGTTGATCGATTGGGTTGCTG 	1
------------------------------------------------------------------------------TGATTGATCGATCGATGGTCAGGAG 	1
-------------------------------------------------------------------------------GATTGATCGATCGATGGTCAGGAG 	1
----------------------------------------------------------------------------------------------------------GAAGAGAATTGGAGAGAGTGCAT 	1
-----------------------------------------------------------------------------------------------------------AAGAGAATTGGAGAGAGTGCAT 	7
-----------------------------------------------------------------------------------------------------------AAGAGAATTGGAGAGAGTGCA 	30
-----------------------------------------------------------------------------------------------------------AAGAGAATTGGAGAGAGTG 	1
-----------------------------------------------------------------------------------------------------------AAGAGAATTGGAGAGAGTGC 	2
------------------------------------------------------------------------------------------------------------AGAGAATTGGAGAGAGTGCAT 	2312
------------------------------------------------------------------------------------------------------------AGAGAATTGGAGAGAGTGC 	54
------------------------------------------------------------------------------------------------------------AGAGAATTGGAGAGAGTGCA 	1358
------------------------------------------------------------------------------------------------------------AGAGAATTGGAGAGAGTGCATT 	44
-------------------------------------------------------------------------------------------------------------GAGAATTGGAGAGAGTGCA 	41
-------------------------------------------------------------------------------------------------------------GAGAATTGGAGAGAGTGCATT 	2
-------------------------------------------------------------------------------------------------------------GAGAATTGGAGAGAGTGCAT 	60
--------------------------------------------------------------------------------------------------------------AGAATTGGAGAGAGTGCATT 	2
--------------------------------------------------------------------------------------------------------------AGAATTGGAGAGAGTGCAT 	7
------------------------------------------------------------------------------------------------------------------TTGGAGAGAGTGCATTGTGAA 	1


Overlaps with: MNEST006986
Overlaps with miRBase pre-miRNAs: ppt-MIR1023a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Physcomitrella patens GSM115096 AGAGAATTGGAGAGAGTGCAT ACACTCTCTCCATTTCTCTAC down 3 0


Secondary structure

GACCACCTTGCAGTTTCATGGCACACTCTCTCCATTTCTCTACCGTTCATGCAGCGGTTGATCGATTGGGTTGCTGGTTGATTGATCGATCGATGGTCAGGAGTTGGAAGAGAATTGGAGAGAGTGCATTGTGAATTGCGGGGTTGAC
----------------------ACACTCTCTCCATTTCTCTAC 	1981
----------------------ACACTCTCTCCATTTCTCTA 	4
----------------------ACACTCTCTCCATTTCTCTACC 	33
----------------------ACACTCTCTCCATTTCTCT 	11
-----------------------CACTCTCTCCATTTCTCTA 	1
-----------------------CACTCTCTCCATTTCTCTAC 	20
------------------------ACTCTCTCCATTTCTCTAC 	2
--------------------------TCTCTCCATTTCTCTACCGT 	1
---------------------------------------------------------------------------------------------------------GGAAGAGAATTGGAGAGAGTGCAT 	2
-----------------------------------------------------------------------------------------------------------AAGAGAATTGGAGAGAGTGCATT 	1
-----------------------------------------------------------------------------------------------------------AAGAGAATTGGAGAGAGTGCA 	5
-----------------------------------------------------------------------------------------------------------AAGAGAATTGGAGAGAGTGCAT 	10
------------------------------------------------------------------------------------------------------------AGAGAATTGGAGAGAGTGCAT 	3054
------------------------------------------------------------------------------------------------------------AGAGAATTGGAGAGAGTGC 	10
------------------------------------------------------------------------------------------------------------AGAGAATTGGAGAGAGTGCATT 	81
------------------------------------------------------------------------------------------------------------AGAGAATTGGAGAGAGTGCA 	376
-------------------------------------------------------------------------------------------------------------GAGAATTGGAGAGAGTGCATT 	2
-------------------------------------------------------------------------------------------------------------GAGAATTGGAGAGAGTGCA 	5
-------------------------------------------------------------------------------------------------------------GAGAATTGGAGAGAGTGCAT 	23
--------------------------------------------------------------------------------------------------------------AGAATTGGAGAGAGTGCATT 	2
--------------------------------------------------------------------------------------------------------------AGAATTGGAGAGAGTGCAT 	5
---------------------------------------------------------------------------------------------------------------GAATTGGAGAGAGTGCATT 	3


Overlaps with: MNEST006986
Overlaps with miRBase pre-miRNAs: ppt-MIR1023a
HuntMi prediction: true miRNA