miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: AGAGAGATCATTGGACTTACAG

selected species: Caenorhabditis elegans



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Caenorhabditis elegans GSM427344-5691 AGAGAGATCATTGGACTTACAG GTAAGTTCATGATTTCTCCCA down 3 1


Secondary structure

AGAATGTTGAATATCACGCTGATGTTGTAAAGGTAAGTTCATGATTTCTCCCATATATTTTTCATGAGAGAGATCATTGGACTTACAGAGTATGACAAAATCAGCAACTCATCGCAA
------------------------------------------------------------------AGAGAGATCATTGGACTTACAG 	15

Overlaps with: MNEST038405
Overlaps with miRBase pre-miRNAs: cel-mir-1018
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Caenorhabditis elegans GSM427332-5684 AGAGAGATCATTGGACTTACAG GTAAGTTCATGATTTCTCCCA down 3 1


Secondary structure

AGAATGTTGAATATCACGCTGATGTTGTAAAGGTAAGTTCATGATTTCTCCCATATATTTTTCATGAGAGAGATCATTGGACTTACAGAGTATGACAAAATCAGCAACTCATCGCAA
------------------------------------------------------------------AGAGAGATCATTGGACTTACAG 	87
------------------------------------------------------------------AGAGAGATCATTGGACTTACA 	8
------------------------------------------------------------------AGAGAGATCATTGGACTTACAGA 	1

Overlaps with: MNEST038405
Overlaps with miRBase pre-miRNAs: cel-mir-1018
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Caenorhabditis elegans GSM427345-5693 AGAGAGATCATTGGACTTACAG GTAAGTTCATGATTTCTCCCA down 3 1


Secondary structure

AGAATGTTGAATATCACGCTGATGTTGTAAAGGTAAGTTCATGATTTCTCCCATATATTTTTCATGAGAGAGATCATTGGACTTACAGAGTATGACAAAATCAGCAACTCATCGCAA
------------------------------------------------------------------AGAGAGATCATTGGACTTACAG 	7
------------------------------------------------------------------AGAGAGATCATTGGACTTACA 	1

Overlaps with: MNEST038405
Overlaps with miRBase pre-miRNAs: cel-mir-1018
HuntMi prediction: true miRNA