miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: AGAGATACCTCTGGAGAAGCG

selected species: Drosophila melanogaster



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Drosophila melanogaster GSM371638-15389 AGAGATACCTCTGGAGAAGCG CTTTTCCACCTAGGTGTCTCTCT up 1 2


Secondary structure

AAAAATGAGAACTGCAGGAGACTTGGAGAGCAGAGATACCTCTGGAGAAGCGCGTGACCTGACCCCAGCAGGAGAACCCAACCCGCTTTTCCACCTAGGTGTCTCTCTCTCTCTTTATCTGTTCCTCAGCTCGAGA
-------------------------------AGAGATACCTCTGGAGAAGCG 	11
-------------------------------AGAGATACCTCTGGAGAAGCGCG 	1
-------------------------------AGAGATACCTCTGGAGAAGCGC 	5
-------------------------------AGAGATACCTCTGGAGAAGC 	2
----------------------------------------------------------------------------------CCGCTTTTCCACCTAGGTGTCT 	1
-------------------------------------------------------------------------------------CTTTTCCACCTAGGTGTCTCTCT 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Drosophila melanogaster GSM343833-15151 AGAGATACCTCTGGAGAAGCG CTTTTCCACCTAGGTGTCTCTCT up 1 2


Secondary structure

AAAAATGAGAACTGCAGGAGACTTGGAGAGCAGAGATACCTCTGGAGAAGCGCGTGACCTGACCCCAGCAGGAGAACCCAACCCGCTTTTCCACCTAGGTGTCTCTCTCTCTCTTTATCTGTTCCTCAGCTCGAGA
------------------------------CAGAGATACCTCTGGAGAAGCG 	1
-------------------------------AGAGATACCTCTGGAGAAGC 	3
-------------------------------AGAGATACCTCTGGAGAAGCG 	5
-------------------------------AGAGATACCTCTGGAGAAGCGC 	1
---------------------------------AGATACCTCTGGAGAAGCGCGT 	1
-----------------------------------------------------------------------------------CGCTTTTCCACCTAGGTGTCT 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Drosophila melanogaster GSM399100-5263 AGAGATACCTCTGGAGAAGCG CTTTTCCACCTAGGTGTCTCTCT up 1 2


Secondary structure

AAAAATGAGAACTGCAGGAGACTTGGAGAGCAGAGATACCTCTGGAGAAGCGCGTGACCTGACCCCAGCAGGAGAACCCAACCCGCTTTTCCACCTAGGTGTCTCTCTCTCTCTTTATCTGTTCCTCAGCTCGAGA
-------------------------------AGAGATACCTCTGGAGAAGC 	1
-------------------------------AGAGATACCTCTGGAGAAGCG 	6
-------------------------------AGAGATACCTCTGGAGAAGCGC 	1
-------------------------------------------------------------------------------------CTTTTCCACCTAGGTGTCTCTCT 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Drosophila melanogaster GSM399110-16285 AGAGATACCTCTGGAGAAGCG CTTTTCCACCTAGGTGTCTCTCT up 1 2


Secondary structure

AAAAATGAGAACTGCAGGAGACTTGGAGAGCAGAGATACCTCTGGAGAAGCGCGTGACCTGACCCCAGCAGGAGAACCCAACCCGCTTTTCCACCTAGGTGTCTCTCTCTCTCTTTATCTGTTCCTCAGCTCGAGA
-------------------------------AGAGATACCTCTGGAGAAGC 	5
-------------------------------AGAGATACCTCTGGAGAAGCG 	15
------------------------------------------------------------------------------------GCTTTTCCACCTAGGTGTCTCTC 	3


HuntMi prediction: true miRNA