miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: AGAGATCAGCGGTTACACTACA

selected species: Caenorhabditis elegans



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Caenorhabditis elegans GSM427344-5691 AGAGATCAGCGGTTACACTACA AGTGTAACCACTCTTCTCCTTC down 3 2


Secondary structure

ACCATGACTCTCAGGAATGGTGAGTGTAACCACTCTTCTCCTTCCGAGTATTGATTATCGAGAAGAGATCAGCGGTTACACTACATTATTAGTAAGAGTCCTTA
---------------------------------------------------------------AGAGATCAGCGGTTACACTACA 	39
---------------------------------------------------------------AGAGATCAGCGGTTACACTAC 	4
---------------------------------------------------------------AGAGATCAGCGGTTACACTACAT 	1

Overlaps with: MNEST038433
Overlaps with miRBase pre-miRNAs: cel-mir-2209a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Caenorhabditis elegans GSM427332-5684 AGAGATCAGCGGTTACACTACA AGTGTAACCACTCTTCTCCTTC down 3 2


Secondary structure

ACCATGACTCTCAGGAATGGTGAGTGTAACCACTCTTCTCCTTCCGAGTATTGATTATCGAGAAGAGATCAGCGGTTACACTACATTATTAGTAAGAGTCCTTA
---------------------------------------------------------------AGAGATCAGCGGTTACACTACA 	77
---------------------------------------------------------------AGAGATCAGCGGTTACACTAC 	7
---------------------------------------------------------------AGAGATCAGCGGTTACACTACAT 	3
---------------------------------------------------------------AGAGATCAGCGGTTACACT 	1

Overlaps with: MNEST038433
Overlaps with miRBase pre-miRNAs: cel-mir-2209a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Caenorhabditis elegans GSM427346-5695 AGAGATCAGCGGTTACACTACA AGTGTAACCACTCTTCTCCTTC down 3 2


Secondary structure

ACCATGACTCTCAGGAATGGTGAGTGTAACCACTCTTCTCCTTCCGAGTATTGATTATCGAGAAGAGATCAGCGGTTACACTACATTATTAGTAAGAGTCCTTA
---------------------------------------------------------------AGAGATCAGCGGTTACACTACA 	26
---------------------------------------------------------------AGAGATCAGCGGTTACACTAC 	3

Overlaps with: MNEST038433
Overlaps with miRBase pre-miRNAs: cel-mir-2209a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Caenorhabditis elegans GSM427345-5693 AGAGATCAGCGGTTACACTACA AGTGTAACCACTCTTCTCCTTC down 3 2


Secondary structure

ACCATGACTCTCAGGAATGGTGAGTGTAACCACTCTTCTCCTTCCGAGTATTGATTATCGAGAAGAGATCAGCGGTTACACTACATTATTAGTAAGAGTCCTTA
---------------------------------------------------------------AGAGATCAGCGGTTACACTACA 	12
---------------------------------------------------------------AGAGATCAGCGGTTACACTAC 	1

Overlaps with: MNEST038433
Overlaps with miRBase pre-miRNAs: cel-mir-2209a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Caenorhabditis elegans GSM427297-5679 AGAGATCAGCGGTTACACTACA AGTGTAACCACTCTTCTCCTTC down 3 2


Secondary structure

ACCATGACTCTCAGGAATGGTGAGTGTAACCACTCTTCTCCTTCCGAGTATTGATTATCGAGAAGAGATCAGCGGTTACACTACATTATTAGTAAGAGTCCTTA
---------------------------------------------------------------AGAGATCAGCGGTTACACTACA 	34

Overlaps with: MNEST038433
Overlaps with miRBase pre-miRNAs: cel-mir-2209a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Caenorhabditis elegans GSM427301-5681 AGAGATCAGCGGTTACACTACA AGTGTAACCACTCTTCTCCTTC down 3 2


Secondary structure

ACCATGACTCTCAGGAATGGTGAGTGTAACCACTCTTCTCCTTCCGAGTATTGATTATCGAGAAGAGATCAGCGGTTACACTACATTATTAGTAAGAGTCCTTA
--------------------------------------------------------------AAGAGATCAGCGGTTACACTAC 	1
---------------------------------------------------------------AGAGATCAGCGGTTACACTACA 	23

Overlaps with: MNEST038433
Overlaps with miRBase pre-miRNAs: cel-mir-2209a
HuntMi prediction: true miRNA