miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AGATCAGAAGGTGACTGTGGCT

selected species: Mus musculus



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM539868 AGATCAGAAGGTGACTGTGGCT CCACAGCACTGCCTGGTCAGA up 3 1


Secondary structure

ACTCCACGTCACCTGCTCCTCAGATCAGAAGGTGACTGTGGCTTTGGGTGGATATTAATCAGCCACAGCACTGCCTGGTCAGAAAGAGCAAGTGTCCTAGC
--------------------CAGATCAGAAGGTGACTGTGGCTTTG 	1
--------------------CAGATCAGAAGGTGACTGTGGCTT 	1
--------------------CAGATCAGAAGGTGACTGTGGCT 	4
--------------------CAGATCAGAAGGTGACTGTGGC 	2
--------------------CAGATCAGAAGGTGACTGTG 	1
---------------------AGATCAGAAGGTGACTGTGGCT 	9
---------------------AGATCAGAAGGTGACTGTGGC 	2

Overlaps with: MNEST032899
Overlaps with miRBase pre-miRNAs: mmu-mir-383 rno-mir-383
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM539870 AGATCAGAAGGTGACTGTGGCT CCACAGCACTGCCTGGTCAGA up 3 1


Secondary structure

ACTCCACGTCACCTGCTCCTCAGATCAGAAGGTGACTGTGGCTTTGGGTGGATATTAATCAGCCACAGCACTGCCTGGTCAGAAAGAGCAAGTGTCCTAGC
--------------------CAGATCAGAAGGTGACTGTGGCTT 	2
--------------------CAGATCAGAAGGTGACTGTGGCT 	6
--------------------CAGATCAGAAGGTGACTGTGGC 	2
--------------------CAGATCAGAAGGTGACTGT 	2
---------------------AGATCAGAAGGTGACTGTGGCTTT 	2
---------------------AGATCAGAAGGTGACTGTGGCT 	12
---------------------AGATCAGAAGGTGACTGTG 	1

Overlaps with: MNEST032899
Overlaps with miRBase pre-miRNAs: mmu-mir-383 rno-mir-383
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM539876 AGATCAGAAGGTGACTGTGGCT CCACAGCACTGCCTGGTCAGA up 3 1


Secondary structure

ACTCCACGTCACCTGCTCCTCAGATCAGAAGGTGACTGTGGCTTTGGGTGGATATTAATCAGCCACAGCACTGCCTGGTCAGAAAGAGCAAGTGTCCTAGC
--------------------CAGATCAGAAGGTGACTGTGGCT 	1
--------------------CAGATCAGAAGGTGACTGTGGC 	1
---------------------AGATCAGAAGGTGACTGTGGCT 	5
----------------------GATCAGAAGGTGACTGTGGCTT 	1
----------------------GATCAGAAGGTGACTGTGGCT 	2

Overlaps with: MNEST032899
Overlaps with miRBase pre-miRNAs: mmu-mir-383 rno-mir-383
HuntMi prediction: true miRNA