miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: AGATCTTCTGGCTATAGTTT

selected species: Ciona intestinalis



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Ciona intestinalis GSM343283-14443 AGATCTTCTGGCTATAGTTTG AACAATTATCAGAAGATTTCT up 3 0


Secondary structure

TACTGTCATTATTGTTATATTAGTGTGAAAAAGATCTTCTGGCTATAGTTTGTTTGAACTTCTATTCTTTAAGATCAAAATACAAACAATTATCAGAAGATTTCTTTCATGCATATTAACTTCTGCATTTATC
-------------------------------AGATCTTCTGGCTATAGTTTGT 	21
-------------------------------AGATCTTCTGGCTATAGTTTG 	22

Overlaps with: MNEST025130 MNEST025131
Overlaps with miRBase pre-miRNAs: cin-mir-4084
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Ciona intestinalis GSM343282-14442 AGATCTTCTGGCTATAGTTTGT AAACAATTATCAGAAGATTTCT up 3 0


Secondary structure

TACTGTCATTATTGTTATATTAGTGTGAAAAAGATCTTCTGGCTATAGTTTGTTTGAACTTCTATTCTTTAAGATCAAAATACAAACAATTATCAGAAGATTTCTTTCATGCATATTAACTTCTGCATTTATC
-------------------------------AGATCTTCTGGCTATAGTTTGT 	31
-------------------------------AGATCTTCTGGCTATAGTTTG 	26
-------------------------------AGATCTTCTGGCTATAGTTT 	1
-----------------------------------------------------------------------------------AAACAATTATCAGAAGATTTC 	1

Overlaps with: MNEST025130 MNEST025131
Overlaps with miRBase pre-miRNAs: cin-mir-4084
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Ciona intestinalis GSM343284-14444 AGATCTTCTGGCTATAGTTTGT AAACAATTATCAGAAGATTTCT up 3 0


Secondary structure

TACTGTCATTATTGTTATATTAGTGTGAAAAAGATCTTCTGGCTATAGTTTGTTTGAACTTCTATTCTTTAAGATCAAAATACAAACAATTATCAGAAGATTTCTTTCATGCATATTAACTTCTGCATTTATC
-------------------------------AGATCTTCTGGCTATAGTTTGT 	8
-------------------------------AGATCTTCTGGCTATAGTTTG 	4

Overlaps with: MNEST025130 MNEST025131
Overlaps with miRBase pre-miRNAs: cin-mir-4084
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Ciona intestinalis GSM343286 AGATCTTCTGGCTATAGTTT ACAATTATCAGAAGATTTCT up 3 0


Secondary structure

TACTGTCATTATTGTTATATTAGTGTGAAAAAGATCTTCTGGCTATAGTTTGTTTGAACTTCTATTCTTTAAGATCAAAATACAAACAATTATCAGAAGATTTCTTTCATGCATATTAACTTCTGCATTTATC
-------------------------------AGATCTTCTGGCTATAGTTT 	5

Overlaps with: MNEST025130 MNEST025131
Overlaps with miRBase pre-miRNAs: cin-mir-4084
HuntMi prediction: true miRNA